EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSFCAG00000028817 (Gene tree)
Gene ID: 101099159
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Plus strand
Length: 227120 bases
Position: chrE1:14605341-14832460
Accession: 101099159
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000023305	EST1	PF10374.9	3.7e-15	1	1
ENSFCAP00000023305	EST1_DNA_bind	PF10373.9	8.3e-61	1	1
ENSFCAP00000023305	PIN_4	PF13638.6	1.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000024740	SMG6-201	4242	XM_023244236	ENSFCAP00000023305	1413 (aa)	XP_023100004	M3X9K3

Gene Model

Click here to download ENSFCAG00000028817's gene model file

Pathways

Pathway ID	Pathway Name	Source
fca03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000028817's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000028817	SMG6	100	93.939	ENSG00000070366	SMG6	100	99.187	Homo_sapiens
ENSFCAG00000028817	SMG6	89	53.171	ENSAPOG00000019448	smg6	78	53.564	Acanthochromis_polyacanthus
ENSFCAG00000028817	SMG6	100	97.246	ENSAMEG00000007632	SMG6	100	97.246	Ailuropoda_melanoleuca
ENSFCAG00000028817	SMG6	83	54.961	ENSAOCG00000002630	smg6	74	54.891	Amphiprion_ocellaris
ENSFCAG00000028817	SMG6	83	55.197	ENSAPEG00000019101	smg6	74	55.047	Amphiprion_percula
ENSFCAG00000028817	SMG6	83	55.364	ENSATEG00000006483	smg6	73	55.418	Anabas_testudineus
ENSFCAG00000028817	SMG6	87	56.997	ENSACAG00000011783	SMG6	99	58.189	Anolis_carolinensis
ENSFCAG00000028817	SMG6	100	93.939	ENSANAG00000035760	SMG6	100	93.939	Aotus_nancymaae
ENSFCAG00000028817	SMG6	72	59.447	ENSACLG00000005288	smg6	80	55.278	Astatotilapia_calliptera
ENSFCAG00000028817	SMG6	69	63.471	ENSAMXG00000017326	smg6	98	51.615	Astyanax_mexicanus
ENSFCAG00000028817	SMG6	100	95.329	ENSBTAG00000000267	SMG6	100	95.329	Bos_taurus
ENSFCAG00000028817	SMG6	100	93.658	ENSCJAG00000001820	SMG6	100	93.658	Callithrix_jacchus
ENSFCAG00000028817	SMG6	100	97.240	ENSCAFG00000019260	SMG6	100	97.240	Canis_familiaris
ENSFCAG00000028817	SMG6	100	97.240	ENSCAFG00020009770	SMG6	100	97.240	Canis_lupus_dingo
ENSFCAG00000028817	SMG6	100	94.904	ENSCHIG00000021998	SMG6	100	94.904	Capra_hircus
ENSFCAG00000028817	SMG6	100	93.939	ENSTSYG00000003406	SMG6	100	97.847	Carlito_syrichta
ENSFCAG00000028817	SMG6	98	77.938	ENSCAPG00000016197	SMG6	99	82.904	Cavia_aperea
ENSFCAG00000028817	SMG6	100	91.690	ENSCPOG00000014878	SMG6	100	91.690	Cavia_porcellus
ENSFCAG00000028817	SMG6	100	94.010	ENSCCAG00000035801	SMG6	100	94.010	Cebus_capucinus
ENSFCAG00000028817	SMG6	100	93.798	ENSCATG00000031956	SMG6	100	93.798	Cercocebus_atys
ENSFCAG00000028817	SMG6	100	93.446	ENSCLAG00000006748	SMG6	100	93.446	Chinchilla_lanigera
ENSFCAG00000028817	SMG6	100	94.362	ENSCSAG00000013800	SMG6	100	94.362	Chlorocebus_sabaeus
ENSFCAG00000028817	SMG6	51	95.522	ENSCHOG00000005024	-	66	95.522	Choloepus_hoffmanni
ENSFCAG00000028817	SMG6	100	72.708	ENSCPBG00000020369	SMG6	100	73.264	Chrysemys_picta_bellii
ENSFCAG00000028817	SMG6	98	94.152	ENSCANG00000031764	SMG6	100	97.260	Colobus_angolensis_palliatus
ENSFCAG00000028817	SMG6	55	88.875	ENSCGRG00001019595	Smg6	100	88.875	Cricetulus_griseus_chok1gshd
ENSFCAG00000028817	SMG6	98	85.776	ENSCGRG00000007782	Smg6	99	85.921	Cricetulus_griseus_crigri
ENSFCAG00000028817	SMG6	85	54.902	ENSCSEG00000012757	smg6	80	53.647	Cynoglossus_semilaevis
ENSFCAG00000028817	SMG6	72	57.804	ENSCVAG00000012789	smg6	74	53.901	Cyprinodon_variegatus
ENSFCAG00000028817	SMG6	100	50.705	ENSDARG00000100481	smg6	100	51.180	Danio_rerio
ENSFCAG00000028817	SMG6	100	94.151	ENSDNOG00000048283	SMG6	100	94.151	Dasypus_novemcinctus
ENSFCAG00000028817	SMG6	100	89.895	ENSDORG00000016614	Smg6	94	98.198	Dipodomys_ordii
ENSFCAG00000028817	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSFCAG00000028817	SMG6	74	50.292	ENSEBUG00000005059	smg6	71	49.806	Eptatretus_burgeri
ENSFCAG00000028817	SMG6	99	96.953	ENSEASG00005009318	SMG6	99	96.953	Equus_asinus_asinus
ENSFCAG00000028817	SMG6	99	96.669	ENSECAG00000006519	SMG6	99	96.669	Equus_caballus
ENSFCAG00000028817	SMG6	100	84.218	ENSEEUG00000003493	SMG6	100	84.218	Erinaceus_europaeus
ENSFCAG00000028817	SMG6	72	60.648	ENSELUG00000005934	smg6	69	55.957	Esox_lucius
ENSFCAG00000028817	SMG6	98	73.025	ENSFALG00000006538	SMG6	99	73.096	Ficedula_albicollis
ENSFCAG00000028817	SMG6	100	92.953	ENSFDAG00000015106	SMG6	100	92.953	Fukomys_damarensis
ENSFCAG00000028817	SMG6	83	53.203	ENSFHEG00000013282	smg6	75	53.438	Fundulus_heteroclitus
ENSFCAG00000028817	SMG6	53	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSFCAG00000028817	SMG6	100	72.218	ENSGALG00000003108	SMG6	98	72.337	Gallus_gallus
ENSFCAG00000028817	SMG6	83	53.888	ENSGAFG00000000379	smg6	74	53.967	Gambusia_affinis
ENSFCAG00000028817	SMG6	91	54.430	ENSGACG00000020521	smg6	99	54.256	Gasterosteus_aculeatus
ENSFCAG00000028817	SMG6	98	72.436	ENSGAGG00000025617	SMG6	99	73.006	Gopherus_agassizii
ENSFCAG00000028817	SMG6	100	94.785	ENSGGOG00000017156	SMG6	100	94.785	Gorilla_gorilla
ENSFCAG00000028817	SMG6	72	59.743	ENSHBUG00000021311	smg6	74	55.721	Haplochromis_burtoni
ENSFCAG00000028817	SMG6	100	92.681	ENSHGLG00000012882	SMG6	100	92.681	Heterocephalus_glaber_female
ENSFCAG00000028817	SMG6	100	92.752	ENSHGLG00100017815	SMG6	100	92.752	Heterocephalus_glaber_male
ENSFCAG00000028817	SMG6	72	59.351	ENSHCOG00000008761	smg6	97	53.734	Hippocampus_comes
ENSFCAG00000028817	SMG6	83	55.360	ENSIPUG00000012493	smg6	75	55.096	Ictalurus_punctatus
ENSFCAG00000028817	SMG6	100	94.785	ENSSTOG00000028127	SMG6	100	94.785	Ictidomys_tridecemlineatus
ENSFCAG00000028817	SMG6	79	90.000	ENSJJAG00000015367	Smg6	95	88.031	Jaculus_jaculus
ENSFCAG00000028817	SMG6	74	58.902	ENSKMAG00000000279	smg6	78	53.544	Kryptolebias_marmoratus
ENSFCAG00000028817	SMG6	87	53.671	ENSLBEG00000002184	smg6	76	53.507	Labrus_bergylta
ENSFCAG00000028817	SMG6	55	58.685	ENSLACG00000000806	-	98	59.801	Latimeria_chalumnae
ENSFCAG00000028817	SMG6	73	65.575	ENSLOCG00000006448	smg6	99	55.325	Lepisosteus_oculatus
ENSFCAG00000028817	SMG6	100	93.939	ENSLAFG00000001261	SMG6	100	93.939	Loxodonta_africana
ENSFCAG00000028817	SMG6	100	94.362	ENSMFAG00000003394	SMG6	100	94.362	Macaca_fascicularis
ENSFCAG00000028817	SMG6	100	94.292	ENSMMUG00000023161	SMG6	100	94.292	Macaca_mulatta
ENSFCAG00000028817	SMG6	100	89.318	ENSMNEG00000044592	SMG6	100	89.318	Macaca_nemestrina
ENSFCAG00000028817	SMG6	99	91.541	ENSMLEG00000029353	SMG6	99	97.368	Mandrillus_leucophaeus
ENSFCAG00000028817	SMG6	85	55.812	ENSMAMG00000020119	smg6	80	55.709	Mastacembelus_armatus
ENSFCAG00000028817	SMG6	72	59.631	ENSMZEG00005024736	smg6	74	55.381	Maylandia_zebra
ENSFCAG00000028817	SMG6	73	67.137	ENSMGAG00000005401	-	99	67.137	Meleagris_gallopavo
ENSFCAG00000028817	SMG6	100	95.842	ENSMICG00000012913	SMG6	100	95.842	Microcebus_murinus
ENSFCAG00000028817	SMG6	100	48.252	ENSMMOG00000010883	smg6	100	48.498	Mola_mola
ENSFCAG00000028817	SMG6	100	86.639	ENSMODG00000010622	SMG6	100	86.639	Monodelphis_domestica
ENSFCAG00000028817	SMG6	83	55.156	ENSMALG00000001106	smg6	73	55.729	Monopterus_albus
ENSFCAG00000028817	SMG6	100	91.966	MGP_CAROLIEiJ_G0016729	Smg6	100	91.966	Mus_caroli
ENSFCAG00000028817	SMG6	100	91.684	ENSMUSG00000038290	Smg6	100	91.684	Mus_musculus
ENSFCAG00000028817	SMG6	100	91.608	MGP_PahariEiJ_G0017866	Smg6	100	91.608	Mus_pahari
ENSFCAG00000028817	SMG6	100	91.684	MGP_SPRETEiJ_G0017572	Smg6	100	91.684	Mus_spretus
ENSFCAG00000028817	SMG6	100	97.665	ENSMPUG00000013046	SMG6	100	97.665	Mustela_putorius_furo
ENSFCAG00000028817	SMG6	100	95.612	ENSMLUG00000005739	SMG6	100	95.612	Myotis_lucifugus
ENSFCAG00000028817	SMG6	98	91.835	ENSNGAG00000007287	Smg6	99	91.835	Nannospalax_galili
ENSFCAG00000028817	SMG6	72	58.878	ENSNBRG00000009511	smg6	81	54.738	Neolamprologus_brichardi
ENSFCAG00000028817	SMG6	98	94.189	ENSNLEG00000017171	SMG6	100	97.847	Nomascus_leucogenys
ENSFCAG00000028817	SMG6	98	82.997	ENSMEUG00000015804	SMG6	99	82.997	Notamacropus_eugenii
ENSFCAG00000028817	SMG6	62	92.308	ENSOPRG00000000579	SMG6	85	98.421	Ochotona_princeps
ENSFCAG00000028817	SMG6	100	86.488	ENSODEG00000008038	SMG6	100	86.488	Octodon_degus
ENSFCAG00000028817	SMG6	100	50.768	ENSONIG00000005594	smg6	100	51.773	Oreochromis_niloticus
ENSFCAG00000028817	SMG6	100	93.737	ENSOCUG00000013018	SMG6	100	93.878	Oryctolagus_cuniculus
ENSFCAG00000028817	SMG6	83	54.374	ENSORLG00000003317	smg6	74	55.102	Oryzias_latipes
ENSFCAG00000028817	SMG6	83	54.459	ENSORLG00020015343	smg6	74	54.796	Oryzias_latipes_hni
ENSFCAG00000028817	SMG6	83	54.331	ENSORLG00015020454	smg6	74	55.059	Oryzias_latipes_hsok
ENSFCAG00000028817	SMG6	83	53.785	ENSOMEG00000010838	smg6	75	54.144	Oryzias_melastigma
ENSFCAG00000028817	SMG6	100	94.577	ENSOGAG00000004483	SMG6	100	94.577	Otolemur_garnettii
ENSFCAG00000028817	SMG6	100	93.296	ENSOARG00000015076	SMG6	100	94.790	Ovis_aries
ENSFCAG00000028817	SMG6	100	94.785	ENSPPAG00000043296	SMG6	100	94.785	Pan_paniscus
ENSFCAG00000028817	SMG6	100	99.788	ENSPPRG00000014581	SMG6	100	99.788	Panthera_pardus
ENSFCAG00000028817	SMG6	98	99.783	ENSPTIG00000008925	SMG6	100	100.000	Panthera_tigris_altaica
ENSFCAG00000028817	SMG6	100	94.715	ENSPTRG00000008544	SMG6	100	98.043	Pan_troglodytes
ENSFCAG00000028817	SMG6	100	94.151	ENSPANG00000024588	SMG6	100	94.151	Papio_anubis
ENSFCAG00000028817	SMG6	89	71.339	ENSPSIG00000006660	SMG6	96	71.417	Pelodiscus_sinensis
ENSFCAG00000028817	SMG6	98	60.870	ENSPMGG00000000844	smg6	100	60.870	Periophthalmus_magnuspinnatus
ENSFCAG00000028817	SMG6	100	92.953	ENSPEMG00000020707	Smg6	100	92.953	Peromyscus_maniculatus_bairdii
ENSFCAG00000028817	SMG6	100	51.335	ENSPFOG00000012035	smg6	100	51.473	Poecilia_formosa
ENSFCAG00000028817	SMG6	77	56.443	ENSPLAG00000017660	smg6	74	53.876	Poecilia_latipinna
ENSFCAG00000028817	SMG6	83	53.708	ENSPMEG00000000258	smg6	74	54.232	Poecilia_mexicana
ENSFCAG00000028817	SMG6	83	54.281	ENSPREG00000010066	smg6	74	54.046	Poecilia_reticulata
ENSFCAG00000028817	SMG6	100	89.451	ENSPPYG00000007790	SMG6	100	89.451	Pongo_abelii
ENSFCAG00000028817	SMG6	100	89.288	ENSPCAG00000000552	SMG6	100	89.288	Procavia_capensis
ENSFCAG00000028817	SMG6	100	95.419	ENSPCOG00000020925	SMG6	100	95.419	Propithecus_coquereli
ENSFCAG00000028817	SMG6	86	96.552	ENSPVAG00000002159	SMG6	86	96.552	Pteropus_vampyrus
ENSFCAG00000028817	SMG6	72	61.855	ENSPNYG00000024151	smg6	79	57.340	Pundamilia_nyererei
ENSFCAG00000028817	SMG6	98	51.832	ENSPNAG00000015480	smg6	97	63.375	Pygocentrus_nattereri
ENSFCAG00000028817	SMG6	100	92.248	ENSRNOG00000003041	Smg6	100	92.248	Rattus_norvegicus
ENSFCAG00000028817	SMG6	100	94.080	ENSRBIG00000024746	SMG6	100	94.080	Rhinopithecus_bieti
ENSFCAG00000028817	SMG6	100	94.151	ENSRROG00000030423	SMG6	100	96.869	Rhinopithecus_roxellana
ENSFCAG00000028817	SMG6	100	93.728	ENSSBOG00000022518	SMG6	100	92.037	Saimiri_boliviensis_boliviensis
ENSFCAG00000028817	SMG6	99	86.052	ENSSHAG00000010045	SMG6	98	86.052	Sarcophilus_harrisii
ENSFCAG00000028817	SMG6	72	62.825	ENSSFOG00015005436	smg6	70	57.811	Scleropages_formosus
ENSFCAG00000028817	SMG6	83	55.435	ENSSMAG00000019777	smg6	73	55.027	Scophthalmus_maximus
ENSFCAG00000028817	SMG6	89	53.431	ENSSDUG00000016412	smg6	79	53.387	Seriola_dumerili
ENSFCAG00000028817	SMG6	86	52.564	ENSSLDG00000020747	smg6	83	52.521	Seriola_lalandi_dorsalis
ENSFCAG00000028817	SMG6	99	70.469	ENSSPUG00000007152	SMG6	99	70.399	Sphenodon_punctatus
ENSFCAG00000028817	SMG6	83	54.082	ENSSPAG00000015633	smg6	74	54.602	Stegastes_partitus
ENSFCAG00000028817	SMG6	100	95.757	ENSSSCG00000017826	SMG6	100	95.757	Sus_scrofa
ENSFCAG00000028817	SMG6	100	73.072	ENSTGUG00000005836	SMG6	100	73.212	Taeniopygia_guttata
ENSFCAG00000028817	SMG6	83	55.211	ENSTRUG00000000358	smg6	81	55.208	Takifugu_rubripes
ENSFCAG00000028817	SMG6	100	50.561	ENSTNIG00000016164	smg6	100	50.362	Tetraodon_nigroviridis
ENSFCAG00000028817	SMG6	100	89.570	ENSTBEG00000011424	SMG6	100	89.570	Tupaia_belangeri
ENSFCAG00000028817	SMG6	91	92.879	ENSTTRG00000001175	SMG6	91	92.879	Tursiops_truncatus
ENSFCAG00000028817	SMG6	100	97.599	ENSUAMG00000025152	SMG6	100	97.599	Ursus_americanus
ENSFCAG00000028817	SMG6	98	97.829	ENSUMAG00000009306	SMG6	100	97.829	Ursus_maritimus
ENSFCAG00000028817	SMG6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSFCAG00000028817	SMG6	100	96.957	ENSVVUG00000021727	SMG6	100	96.957	Vulpes_vulpes
ENSFCAG00000028817	SMG6	98	60.042	ENSXETG00000023799	SMG6	99	59.859	Xenopus_tropicalis
ENSFCAG00000028817	SMG6	83	55.136	ENSXCOG00000009867	smg6	74	55.048	Xiphophorus_couchianus
ENSFCAG00000028817	SMG6	83	54.517	ENSXMAG00000010321	smg6	74	54.281	Xiphophorus_maculatus