EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFCAG00000034766 (Gene tree)
Gene ID: 101097606
Gene Symbol: ZNF550
Alias: MGC41917
Full Name: zinc finger protein 550
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Plus strand
Length: 48500 bases
Position: chrE2:1467268-1515767
Accession: 101097606
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000026406	zf-C2H2	PF00096.26	1e-34	1	5
ENSFCAP00000026406	zf-C2H2	PF00096.26	1e-34	2	5
ENSFCAP00000026406	zf-C2H2	PF00096.26	1e-34	3	5
ENSFCAP00000026406	zf-C2H2	PF00096.26	1e-34	4	5
ENSFCAP00000026406	zf-C2H2	PF00096.26	1e-34	5	5
ENSFCAP00000039626	zf-C2H2	PF00096.26	2.4e-34	1	5
ENSFCAP00000039626	zf-C2H2	PF00096.26	2.4e-34	2	5
ENSFCAP00000039626	zf-C2H2	PF00096.26	2.4e-34	3	5
ENSFCAP00000039626	zf-C2H2	PF00096.26	2.4e-34	4	5
ENSFCAP00000039626	zf-C2H2	PF00096.26	2.4e-34	5	5
ENSFCAP00000026406	zf-met	PF12874.7	1.3e-05	1	1
ENSFCAP00000039626	zf-met	PF12874.7	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000033367	ZNF550-203	1140	-	ENSFCAP00000026406	379 (aa)	-	A0A2I2U1T7
ENSFCAT00000046620	ZNF550-201	1960	XM_006940780	ENSFCAP00000039626	420 (aa)	XP_006940842	A0A2I2V4A8
ENSFCAT00000051679	ZNF550-202	363	-	ENSFCAP00000051276	121 (aa)	-	UPI000DE7BF5F

Gene Model

Click here to download ENSFCAG00000034766's gene model file

Pathways

Pathway ID	Pathway Name	Source
fca05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000034766's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFCAG00000034766	ZNF550	60	48.039	ENSFCAG00000043966	-	99	50.698
ENSFCAG00000034766	ZNF550	77	43.373	ENSFCAG00000025656	PRDM5	79	43.373
ENSFCAG00000034766	ZNF550	63	44.344	ENSFCAG00000037764	-	86	44.344
ENSFCAG00000034766	ZNF550	60	52.968	ENSFCAG00000028299	ZNF226	75	52.968
ENSFCAG00000034766	ZNF550	65	47.170	ENSFCAG00000001780	ZNF236	67	40.860
ENSFCAG00000034766	ZNF550	98	52.414	ENSFCAG00000043995	ZNF235	99	52.414
ENSFCAG00000034766	ZNF550	99	52.261	ENSFCAG00000040603	-	97	52.261
ENSFCAG00000034766	ZNF550	99	45.575	ENSFCAG00000034968	ZFP69B	85	45.575
ENSFCAG00000034766	ZNF550	99	48.276	ENSFCAG00000024047	ZFP1	100	48.276
ENSFCAG00000034766	ZNF550	88	43.925	ENSFCAG00000012809	ZNF683	50	43.925
ENSFCAG00000034766	ZNF550	66	54.338	ENSFCAG00000038024	ZNF551	82	54.338
ENSFCAG00000034766	ZNF550	65	46.512	ENSFCAG00000022250	ZNF574	92	46.512
ENSFCAG00000034766	ZNF550	90	41.429	ENSFCAG00000041174	-	54	41.429
ENSFCAG00000034766	ZNF550	65	42.857	ENSFCAG00000000532	ZBTB47	75	42.857
ENSFCAG00000034766	ZNF550	65	30.556	ENSFCAG00000012158	ZNF423	71	30.556
ENSFCAG00000034766	ZNF550	58	38.824	ENSFCAG00000014146	MAZ	61	35.821
ENSFCAG00000034766	ZNF550	58	36.269	ENSFCAG00000030562	ZNF784	66	36.269
ENSFCAG00000034766	ZNF550	99	51.376	ENSFCAG00000044488	-	96	51.376
ENSFCAG00000034766	ZNF550	99	52.514	ENSFCAG00000039667	-	99	52.514
ENSFCAG00000034766	ZNF550	60	41.026	ENSFCAG00000024689	ZNF319	73	44.898
ENSFCAG00000034766	ZNF550	83	53.097	ENSFCAG00000031825	ZNF112	81	53.097
ENSFCAG00000034766	ZNF550	87	38.439	ENSFCAG00000021958	ZSCAN22	69	38.439
ENSFCAG00000034766	ZNF550	56	37.168	ENSFCAG00000006982	GTF3A	61	37.611
ENSFCAG00000034766	ZNF550	99	52.212	ENSFCAG00000005824	ZNF317	90	48.969
ENSFCAG00000034766	ZNF550	99	46.186	ENSFCAG00000044281	ZNF81	99	48.230
ENSFCAG00000034766	ZNF550	59	49.770	ENSFCAG00000009798	ZNF768	52	50.000
ENSFCAG00000034766	ZNF550	99	52.821	ENSFCAG00000041262	-	98	52.821
ENSFCAG00000034766	ZNF550	60	45.098	ENSFCAG00000028412	ZNF865	70	38.532

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000034766	ZNF550	99	70.604	ENSG00000251369	ZNF550	99	70.604	Homo_sapiens
ENSFCAG00000034766	ZNF550	99	68.766	ENSCATG00000020915	ZNF550	99	68.766	Cercocebus_atys
ENSFCAG00000034766	ZNF550	89	61.671	ENSCLAG00000000250	ZNF550	94	60.574	Chinchilla_lanigera
ENSFCAG00000034766	ZNF550	98	68.281	ENSCSAG00000001629	ZNF550	99	68.281	Chlorocebus_sabaeus
ENSFCAG00000034766	ZNF550	99	69.029	ENSCANG00000033735	ZNF550	99	69.029	Colobus_angolensis_palliatus
ENSFCAG00000034766	ZNF550	89	61.538	ENSDNOG00000033330	-	99	61.127	Dasypus_novemcinctus
ENSFCAG00000034766	ZNF550	99	70.341	ENSGGOG00000014068	ZNF550	99	70.341	Gorilla_gorilla
ENSFCAG00000034766	ZNF550	99	63.810	ENSHGLG00000018048	ZNF550	100	63.810	Heterocephalus_glaber_female
ENSFCAG00000034766	ZNF550	99	69.029	ENSMFAG00000036005	ZNF550	99	69.029	Macaca_fascicularis
ENSFCAG00000034766	ZNF550	99	68.766	ENSMMUG00000006122	ZNF550	99	68.766	Macaca_mulatta
ENSFCAG00000034766	ZNF550	99	69.029	ENSMNEG00000041366	ZNF550	99	69.029	Macaca_nemestrina
ENSFCAG00000034766	ZNF550	99	68.504	ENSMLEG00000034688	ZNF550	99	68.504	Mandrillus_leucophaeus
ENSFCAG00000034766	ZNF550	99	69.657	ENSMICG00000007561	ZNF550	100	69.657	Microcebus_murinus
ENSFCAG00000034766	ZNF550	100	98.095	ENSPPRG00000013475	ZNF550	100	98.095	Panthera_pardus
ENSFCAG00000034766	ZNF550	99	97.659	ENSPTIG00000018007	ZNF550	80	97.885	Panthera_tigris_altaica
ENSFCAG00000034766	ZNF550	99	70.341	ENSPTRG00000011560	ZNF550	99	70.341	Pan_troglodytes
ENSFCAG00000034766	ZNF550	99	68.766	ENSPANG00000030602	ZNF550	99	68.766	Papio_anubis
ENSFCAG00000034766	ZNF550	99	70.449	ENSPCOG00000018751	ZNF550	99	70.449	Propithecus_coquereli
ENSFCAG00000034766	ZNF550	99	66.348	ENSPVAG00000000908	ZNF550	100	66.348	Pteropus_vampyrus
ENSFCAG00000034766	ZNF550	99	68.766	ENSRBIG00000017275	ZNF550	99	68.766	Rhinopithecus_bieti
ENSFCAG00000034766	ZNF550	99	68.766	ENSRROG00000040063	ZNF550	99	68.766	Rhinopithecus_roxellana
ENSFCAG00000034766	ZNF550	98	71.046	ENSTTRG00000000293	ZNF550	99	71.046	Tursiops_truncatus