EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSFCAG00000039965 (Gene tree)
Gene ID: 101096333
Gene Symbol: PRPF38B
Alias: FLJ10330|NET1
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Plus strand
Length: 9456 bases
Position: chrC1:93071849-93081304
Accession: 101096333
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000027000	PRP38	PF03371.15	1.9e-57	1	1
ENSFCAP00000051023	PRP38	PF03371.15	9.4e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000063525	PRPF38B-202	576	-	ENSFCAP00000051023	191 (aa)	-	UPI000DE7ED0A
ENSFCAT00000048810	PRPF38B-201	3741	XM_003990391	ENSFCAP00000027000	548 (aa)	XP_003990440	A0A2I2U3H5

Gene Model

Click here to download ENSFCAG00000039965's gene model file

Pathways

Pathway ID	Pathway Name	Source
fca03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000039965's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000039965	PRPF38B	100	97.445	ENSAMEG00000004364	-	100	97.445	Ailuropoda_melanoleuca
ENSFCAG00000039965	PRPF38B	100	99.088	ENSCAFG00000029761	PRPF38B	100	99.088	Canis_familiaris
ENSFCAG00000039965	PRPF38B	100	98.358	ENSEASG00005000210	PRPF38B	100	98.358	Equus_asinus_asinus
ENSFCAG00000039965	PRPF38B	100	97.818	ENSSTOG00000025032	PRPF38B	100	97.818	Ictidomys_tridecemlineatus
ENSFCAG00000039965	PRPF38B	100	99.273	ENSMPUG00000002738	PRPF38B	100	99.273	Mustela_putorius_furo
ENSFCAG00000039965	PRPF38B	98	98.396	ENSNGAG00000011476	-	100	91.075	Nannospalax_galili
ENSFCAG00000039965	PRPF38B	95	99.614	ENSPTIG00000015015	PRPF38B	98	99.614	Panthera_tigris_altaica
ENSFCAG00000039965	PRPF38B	100	99.454	ENSVVUG00000000684	-	100	99.454	Vulpes_vulpes