EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFDAG00000002617 (Gene tree)
Gene ID: 104868841
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 61353 bases
Position: chrKN122621.1:999630-1060982
Accession: 104868841
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000015016	RRM_1	PF00076.22	2.1e-32	1	2
ENSFDAP00000015016	RRM_1	PF00076.22	2.1e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000004577	PSPC1-201	1831	XM_010633815	ENSFDAP00000015016	510 (aa)	XP_010632117	A0A091E2A2

Gene Model

Click here to download ENSFDAG00000002617's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000002617's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFDAG00000002617	PSPC1	56	53.608	ENSFDAG00000006143	-	76	49.868
ENSFDAG00000002617	PSPC1	75	48.338	ENSFDAG00000017723	-	79	57.746
ENSFDAG00000002617	PSPC1	91	60.390	ENSFDAG00000012809	-	77	69.613

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000002617	PSPC1	100	94.646	ENSG00000121390	PSPC1	100	94.646	Homo_sapiens
ENSFDAG00000002617	PSPC1	90	70.860	ENSAPOG00000015946	pspc1	87	68.987	Acanthochromis_polyacanthus
ENSFDAG00000002617	PSPC1	100	95.202	ENSAMEG00000017420	PSPC1	100	95.202	Ailuropoda_melanoleuca
ENSFDAG00000002617	PSPC1	94	60.612	ENSACIG00000018695	pspc1	91	57.959	Amphilophus_citrinellus
ENSFDAG00000002617	PSPC1	90	69.937	ENSAOCG00000005279	pspc1	87	68.565	Amphiprion_ocellaris
ENSFDAG00000002617	PSPC1	90	70.378	ENSAPEG00000015927	pspc1	88	68.344	Amphiprion_percula
ENSFDAG00000002617	PSPC1	90	58.174	ENSATEG00000004878	pspc1	96	55.278	Anabas_testudineus
ENSFDAG00000002617	PSPC1	91	60.730	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSFDAG00000002617	PSPC1	79	92.822	ENSAPLG00000006246	PSPC1	100	92.822	Anas_platyrhynchos
ENSFDAG00000002617	PSPC1	91	91.416	ENSACAG00000002093	PSPC1	99	84.981	Anolis_carolinensis
ENSFDAG00000002617	PSPC1	92	52.292	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSFDAG00000002617	PSPC1	100	95.202	ENSANAG00000000059	PSPC1	100	95.202	Aotus_nancymaae
ENSFDAG00000002617	PSPC1	99	57.439	ENSACLG00000027220	pspc1	100	54.597	Astatotilapia_calliptera
ENSFDAG00000002617	PSPC1	92	70.988	ENSAMXG00000036881	pspc1	88	68.399	Astyanax_mexicanus
ENSFDAG00000002617	PSPC1	100	94.808	ENSBTAG00000003934	PSPC1	100	94.808	Bos_taurus
ENSFDAG00000002617	PSPC1	100	95.202	ENSCJAG00000004554	PSPC1	100	95.202	Callithrix_jacchus
ENSFDAG00000002617	PSPC1	100	95.202	ENSCAFG00020002009	PSPC1	100	95.202	Canis_lupus_dingo
ENSFDAG00000002617	PSPC1	100	94.808	ENSCHIG00000016708	PSPC1	100	94.808	Capra_hircus
ENSFDAG00000002617	PSPC1	82	87.915	ENSTSYG00000032882	PSPC1	93	85.273	Carlito_syrichta
ENSFDAG00000002617	PSPC1	100	96.538	ENSCPOG00000000395	PSPC1	100	96.538	Cavia_porcellus
ENSFDAG00000002617	PSPC1	100	95.202	ENSCCAG00000033498	PSPC1	100	95.202	Cebus_capucinus
ENSFDAG00000002617	PSPC1	100	94.646	ENSCATG00000036434	PSPC1	100	94.646	Cercocebus_atys
ENSFDAG00000002617	PSPC1	90	88.553	ENSCLAG00000005241	PSPC1	99	88.553	Chinchilla_lanigera
ENSFDAG00000002617	PSPC1	100	88.910	ENSCHOG00000008913	PSPC1	100	88.719	Choloepus_hoffmanni
ENSFDAG00000002617	PSPC1	99	88.008	ENSCPBG00000020859	PSPC1	99	88.008	Chrysemys_picta_bellii
ENSFDAG00000002617	PSPC1	60	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSFDAG00000002617	PSPC1	79	85.185	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSFDAG00000002617	PSPC1	100	94.061	ENSCGRG00001018368	Pspc1	100	94.061	Cricetulus_griseus_chok1gshd
ENSFDAG00000002617	PSPC1	100	94.061	ENSCGRG00000011724	Pspc1	100	94.061	Cricetulus_griseus_crigri
ENSFDAG00000002617	PSPC1	89	66.307	ENSCVAG00000007679	-	91	63.320	Cyprinodon_variegatus
ENSFDAG00000002617	PSPC1	99	66.667	ENSDARG00000006621	pspc1	100	67.150	Danio_rerio
ENSFDAG00000002617	PSPC1	100	94.073	ENSDNOG00000011078	PSPC1	100	94.073	Dasypus_novemcinctus
ENSFDAG00000002617	PSPC1	100	91.205	ENSDORG00000016050	Pspc1	100	91.205	Dipodomys_ordii
ENSFDAG00000002617	PSPC1	56	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSFDAG00000002617	PSPC1	90	59.091	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSFDAG00000002617	PSPC1	64	44.444	ENSEBUG00000010133	pspc1	83	46.562	Eptatretus_burgeri
ENSFDAG00000002617	PSPC1	100	94.990	ENSEASG00005000119	PSPC1	100	94.990	Equus_asinus_asinus
ENSFDAG00000002617	PSPC1	100	94.990	ENSECAG00000017286	PSPC1	100	94.990	Equus_caballus
ENSFDAG00000002617	PSPC1	89	86.885	ENSEEUG00000011288	-	88	84.295	Erinaceus_europaeus
ENSFDAG00000002617	PSPC1	91	71.069	ENSELUG00000003746	pspc1	78	81.651	Esox_lucius
ENSFDAG00000002617	PSPC1	100	95.777	ENSFCAG00000027841	PSPC1	100	95.777	Felis_catus
ENSFDAG00000002617	PSPC1	91	94.004	ENSFALG00000008750	PSPC1	99	87.380	Ficedula_albicollis
ENSFDAG00000002617	PSPC1	90	66.595	ENSGMOG00000015074	pspc1	86	65.875	Gadus_morhua
ENSFDAG00000002617	PSPC1	99	88.031	ENSGALG00000017142	PSPC1	99	88.224	Gallus_gallus
ENSFDAG00000002617	PSPC1	67	75.362	ENSGAFG00000006327	pspc1	71	75.362	Gambusia_affinis
ENSFDAG00000002617	PSPC1	90	65.733	ENSGACG00000014901	pspc1	97	70.455	Gasterosteus_aculeatus
ENSFDAG00000002617	PSPC1	91	60.086	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSFDAG00000002617	PSPC1	99	87.814	ENSGAGG00000019164	PSPC1	99	87.814	Gopherus_agassizii
ENSFDAG00000002617	PSPC1	100	94.837	ENSGGOG00000003414	PSPC1	100	94.837	Gorilla_gorilla
ENSFDAG00000002617	PSPC1	99	64.662	ENSHBUG00000001139	pspc1	100	64.286	Haplochromis_burtoni
ENSFDAG00000002617	PSPC1	100	97.692	ENSHGLG00000018811	PSPC1	100	97.692	Heterocephalus_glaber_female
ENSFDAG00000002617	PSPC1	66	97.033	ENSHGLG00100007962	PSPC1	100	97.033	Heterocephalus_glaber_male
ENSFDAG00000002617	PSPC1	78	68.564	ENSHCOG00000013251	pspc1	92	65.459	Hippocampus_comes
ENSFDAG00000002617	PSPC1	99	68.293	ENSIPUG00000013192	pspc1	92	70.876	Ictalurus_punctatus
ENSFDAG00000002617	PSPC1	100	94.646	ENSSTOG00000026833	PSPC1	100	94.646	Ictidomys_tridecemlineatus
ENSFDAG00000002617	PSPC1	100	94.444	ENSJJAG00000018334	Pspc1	100	94.444	Jaculus_jaculus
ENSFDAG00000002617	PSPC1	90	55.508	ENSKMAG00000013525	-	89	53.388	Kryptolebias_marmoratus
ENSFDAG00000002617	PSPC1	95	63.969	ENSLBEG00000004474	pspc1	80	70.789	Labrus_bergylta
ENSFDAG00000002617	PSPC1	99	77.799	ENSLACG00000010762	PSPC1	99	78.585	Latimeria_chalumnae
ENSFDAG00000002617	PSPC1	99	78.978	ENSLOCG00000010832	pspc1	99	79.406	Lepisosteus_oculatus
ENSFDAG00000002617	PSPC1	100	94.828	ENSLAFG00000010968	PSPC1	100	94.828	Loxodonta_africana
ENSFDAG00000002617	PSPC1	100	94.646	ENSMFAG00000032728	PSPC1	100	94.646	Macaca_fascicularis
ENSFDAG00000002617	PSPC1	100	94.646	ENSMMUG00000020262	PSPC1	100	94.646	Macaca_mulatta
ENSFDAG00000002617	PSPC1	100	94.646	ENSMNEG00000027401	PSPC1	100	94.646	Macaca_nemestrina
ENSFDAG00000002617	PSPC1	100	98.246	ENSMLEG00000039043	PSPC1	100	98.246	Mandrillus_leucophaeus
ENSFDAG00000002617	PSPC1	93	66.532	ENSMAMG00000004333	pspc1	91	61.475	Mastacembelus_armatus
ENSFDAG00000002617	PSPC1	99	57.439	ENSMZEG00005005726	pspc1	100	54.597	Maylandia_zebra
ENSFDAG00000002617	PSPC1	79	92.611	ENSMGAG00000015134	PSPC1	100	92.611	Meleagris_gallopavo
ENSFDAG00000002617	PSPC1	88	89.154	ENSMAUG00000021067	Pspc1	99	89.154	Mesocricetus_auratus
ENSFDAG00000002617	PSPC1	100	94.818	ENSMICG00000013970	PSPC1	100	94.818	Microcebus_murinus
ENSFDAG00000002617	PSPC1	100	93.678	ENSMOCG00000006060	Pspc1	100	93.678	Microtus_ochrogaster
ENSFDAG00000002617	PSPC1	96	42.667	ENSMMOG00000004352	pspc1	64	50.281	Mola_mola
ENSFDAG00000002617	PSPC1	93	94.021	ENSMODG00000008029	PSPC1	78	94.021	Monodelphis_domestica
ENSFDAG00000002617	PSPC1	90	69.313	ENSMALG00000008914	pspc1	91	66.324	Monopterus_albus
ENSFDAG00000002617	PSPC1	100	93.499	MGP_CAROLIEiJ_G0019341	Pspc1	100	93.499	Mus_caroli
ENSFDAG00000002617	PSPC1	100	93.690	ENSMUSG00000021938	Pspc1	100	93.690	Mus_musculus
ENSFDAG00000002617	PSPC1	100	93.499	MGP_PahariEiJ_G0030359	Pspc1	100	93.499	Mus_pahari
ENSFDAG00000002617	PSPC1	100	93.499	MGP_SPRETEiJ_G0020232	Pspc1	100	93.499	Mus_spretus
ENSFDAG00000002617	PSPC1	100	95.393	ENSMPUG00000013347	PSPC1	100	95.393	Mustela_putorius_furo
ENSFDAG00000002617	PSPC1	100	93.893	ENSMLUG00000017663	PSPC1	100	93.893	Myotis_lucifugus
ENSFDAG00000002617	PSPC1	100	94.444	ENSNGAG00000011271	Pspc1	100	94.444	Nannospalax_galili
ENSFDAG00000002617	PSPC1	73	64.872	ENSNBRG00000014059	pspc1	92	61.929	Neolamprologus_brichardi
ENSFDAG00000002617	PSPC1	100	94.646	ENSNLEG00000001294	PSPC1	100	94.646	Nomascus_leucogenys
ENSFDAG00000002617	PSPC1	84	91.016	ENSMEUG00000000476	PSPC1	84	91.016	Notamacropus_eugenii
ENSFDAG00000002617	PSPC1	100	84.645	ENSODEG00000019012	-	100	86.372	Octodon_degus
ENSFDAG00000002617	PSPC1	100	85.385	ENSODEG00000007817	-	100	81.749	Octodon_degus
ENSFDAG00000002617	PSPC1	99	64.662	ENSONIG00000012010	pspc1	99	63.569	Oreochromis_niloticus
ENSFDAG00000002617	PSPC1	78	96.742	ENSOANG00000009017	-	100	96.742	Ornithorhynchus_anatinus
ENSFDAG00000002617	PSPC1	99	66.732	ENSOANG00000011381	-	99	66.341	Ornithorhynchus_anatinus
ENSFDAG00000002617	PSPC1	100	94.837	ENSOCUG00000006153	PSPC1	100	94.837	Oryctolagus_cuniculus
ENSFDAG00000002617	PSPC1	90	69.787	ENSORLG00000004232	-	87	66.809	Oryzias_latipes
ENSFDAG00000002617	PSPC1	90	69.362	ENSORLG00020000578	PSPC1	87	66.809	Oryzias_latipes_hni
ENSFDAG00000002617	PSPC1	90	70.213	ENSORLG00015017480	pspc1	87	67.447	Oryzias_latipes_hsok
ENSFDAG00000002617	PSPC1	100	94.837	ENSOGAG00000012643	PSPC1	100	94.837	Otolemur_garnettii
ENSFDAG00000002617	PSPC1	100	92.773	ENSOARG00000014163	PSPC1	100	92.773	Ovis_aries
ENSFDAG00000002617	PSPC1	91	91.631	ENSPPAG00000009836	PSPC1	93	99.695	Pan_paniscus
ENSFDAG00000002617	PSPC1	100	95.777	ENSPPRG00000008833	PSPC1	100	95.777	Panthera_pardus
ENSFDAG00000002617	PSPC1	100	83.922	ENSPTIG00000016917	PSPC1	100	83.922	Panthera_tigris_altaica
ENSFDAG00000002617	PSPC1	93	94.650	ENSPTRG00000005677	PSPC1	99	94.650	Pan_troglodytes
ENSFDAG00000002617	PSPC1	100	94.837	ENSPANG00000001992	PSPC1	100	94.837	Papio_anubis
ENSFDAG00000002617	PSPC1	93	71.959	ENSPKIG00000003578	pspc1	92	71.429	Paramormyrops_kingsleyae
ENSFDAG00000002617	PSPC1	99	87.476	ENSPSIG00000005168	PSPC1	99	87.476	Pelodiscus_sinensis
ENSFDAG00000002617	PSPC1	61	69.745	ENSPMGG00000015135	pspc1	86	69.649	Periophthalmus_magnuspinnatus
ENSFDAG00000002617	PSPC1	100	93.870	ENSPEMG00000015214	Pspc1	100	93.870	Peromyscus_maniculatus_bairdii
ENSFDAG00000002617	PSPC1	50	47.692	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSFDAG00000002617	PSPC1	99	94.061	ENSPCIG00000017680	PSPC1	100	94.061	Phascolarctos_cinereus
ENSFDAG00000002617	PSPC1	94	67.959	ENSPFOG00000003362	pspc1	92	66.870	Poecilia_formosa
ENSFDAG00000002617	PSPC1	94	67.959	ENSPLAG00000011540	pspc1	91	66.870	Poecilia_latipinna
ENSFDAG00000002617	PSPC1	70	64.903	ENSPLAG00000004407	-	52	60.377	Poecilia_latipinna
ENSFDAG00000002617	PSPC1	72	63.710	ENSPMEG00000001025	-	53	59.375	Poecilia_mexicana
ENSFDAG00000002617	PSPC1	94	67.551	ENSPMEG00000008322	pspc1	91	66.463	Poecilia_mexicana
ENSFDAG00000002617	PSPC1	94	67.551	ENSPREG00000007786	pspc1	91	66.463	Poecilia_reticulata
ENSFDAG00000002617	PSPC1	100	94.818	ENSPPYG00000005186	PSPC1	100	94.818	Pongo_abelii
ENSFDAG00000002617	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSFDAG00000002617	PSPC1	100	90.440	ENSPCOG00000014364	PSPC1	100	90.440	Propithecus_coquereli
ENSFDAG00000002617	PSPC1	100	91.908	ENSPVAG00000005036	PSPC1	100	92.678	Pteropus_vampyrus
ENSFDAG00000002617	PSPC1	99	57.627	ENSPNYG00000008893	pspc1	100	54.784	Pundamilia_nyererei
ENSFDAG00000002617	PSPC1	99	68.053	ENSPNAG00000016511	pspc1	97	68.522	Pygocentrus_nattereri
ENSFDAG00000002617	PSPC1	100	94.253	ENSRNOG00000020782	Pspc1	100	94.253	Rattus_norvegicus
ENSFDAG00000002617	PSPC1	95	95.893	ENSRBIG00000036057	PSPC1	99	95.893	Rhinopithecus_bieti
ENSFDAG00000002617	PSPC1	100	95.029	ENSRROG00000036334	PSPC1	100	95.029	Rhinopithecus_roxellana
ENSFDAG00000002617	PSPC1	81	87.651	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSFDAG00000002617	PSPC1	100	88.762	ENSSHAG00000004696	PSPC1	100	88.762	Sarcophilus_harrisii
ENSFDAG00000002617	PSPC1	84	78.923	ENSSFOG00015001395	pspc1	90	78.140	Scleropages_formosus
ENSFDAG00000002617	PSPC1	90	67.364	ENSSMAG00000001761	pspc1	88	73.130	Scophthalmus_maximus
ENSFDAG00000002617	PSPC1	90	68.966	ENSSDUG00000010651	pspc1	100	62.032	Seriola_dumerili
ENSFDAG00000002617	PSPC1	90	64.502	ENSSLDG00000004284	pspc1	80	62.383	Seriola_lalandi_dorsalis
ENSFDAG00000002617	PSPC1	100	87.669	ENSSARG00000000888	PSPC1	100	88.247	Sorex_araneus
ENSFDAG00000002617	PSPC1	91	53.571	ENSSPUG00000001136	-	53	61.625	Sphenodon_punctatus
ENSFDAG00000002617	PSPC1	99	75.000	ENSSPUG00000008550	PSPC1	99	75.670	Sphenodon_punctatus
ENSFDAG00000002617	PSPC1	90	69.072	ENSSPAG00000001921	pspc1	85	69.017	Stegastes_partitus
ENSFDAG00000002617	PSPC1	100	95.393	ENSSSCG00000009569	PSPC1	100	95.393	Sus_scrofa
ENSFDAG00000002617	PSPC1	91	94.004	ENSTGUG00000011295	PSPC1	100	94.004	Taeniopygia_guttata
ENSFDAG00000002617	PSPC1	95	61.446	ENSTRUG00000011335	pspc1	93	60.649	Takifugu_rubripes
ENSFDAG00000002617	PSPC1	92	65.042	ENSTNIG00000010358	pspc1	91	63.778	Tetraodon_nigroviridis
ENSFDAG00000002617	PSPC1	100	75.192	ENSTBEG00000002361	PSPC1	100	74.038	Tupaia_belangeri
ENSFDAG00000002617	PSPC1	100	95.568	ENSTTRG00000003343	PSPC1	100	95.568	Tursiops_truncatus
ENSFDAG00000002617	PSPC1	66	94.556	ENSUAMG00000012309	PSPC1	100	94.556	Ursus_americanus
ENSFDAG00000002617	PSPC1	95	95.893	ENSUMAG00000013993	PSPC1	99	95.893	Ursus_maritimus
ENSFDAG00000002617	PSPC1	78	97.995	ENSVPAG00000010029	PSPC1	100	97.995	Vicugna_pacos
ENSFDAG00000002617	PSPC1	100	95.202	ENSVVUG00000006414	PSPC1	100	95.202	Vulpes_vulpes
ENSFDAG00000002617	PSPC1	67	74.493	ENSXCOG00000017438	pspc1	82	74.493	Xiphophorus_couchianus
ENSFDAG00000002617	PSPC1	67	74.783	ENSXMAG00000007929	pspc1	82	74.783	Xiphophorus_maculatus