EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFDAG00000004683 (Gene tree)
Gene ID: 104871994
Gene Symbol: SNRNP200
Alias: ASCC3L1|BRR2|HELIC2|KIAA0788|RP33|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 27328 bases
Position: chrKN122926.1:820373-847700
Accession: 104871994
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000016278	ResIII	PF04851.15	8e-26	1	2
ENSFDAP00000016278	ResIII	PF04851.15	8e-26	2	2
ENSFDAP00000016278	DEAD	PF00270.29	2.1e-52	1	2
ENSFDAP00000016278	DEAD	PF00270.29	2.1e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000007252	SNRNP200-201	6770	XM_010638142	ENSFDAP00000016278	2136 (aa)	XP_010636444	A0A091D8E5

Gene Model

Click here to download ENSFDAG00000004683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000004683's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFDAG00000004683	SNRNP200	66	32.112	ENSFDAG00000020816	HFM1	53	32.273
ENSFDAG00000004683	SNRNP200	80	44.338	ENSFDAG00000011358	ASCC3	81	44.451

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000004683	SNRNP200	100	99.625	ENSG00000144028	SNRNP200	100	99.625	Homo_sapiens
ENSFDAG00000004683	SNRNP200	99	90.700	ENSAPOG00000010223	snrnp200	99	90.590	Acanthochromis_polyacanthus
ENSFDAG00000004683	SNRNP200	100	99.579	ENSAMEG00000008996	SNRNP200	100	99.579	Ailuropoda_melanoleuca
ENSFDAG00000004683	SNRNP200	97	90.043	ENSACIG00000001764	snrnp200	98	90.043	Amphilophus_citrinellus
ENSFDAG00000004683	SNRNP200	99	90.606	ENSAOCG00000024593	snrnp200	100	89.829	Amphiprion_ocellaris
ENSFDAG00000004683	SNRNP200	97	89.882	ENSAPEG00000012554	snrnp200	100	89.882	Amphiprion_percula
ENSFDAG00000004683	SNRNP200	99	90.559	ENSATEG00000022522	snrnp200	99	90.449	Anabas_testudineus
ENSFDAG00000004683	SNRNP200	99	97.501	ENSAPLG00000004313	SNRNP200	100	97.501	Anas_platyrhynchos
ENSFDAG00000004683	SNRNP200	99	97.322	ENSACAG00000000434	SNRNP200	100	97.322	Anolis_carolinensis
ENSFDAG00000004683	SNRNP200	100	95.056	ENSANAG00000036625	SNRNP200	100	95.476	Aotus_nancymaae
ENSFDAG00000004683	SNRNP200	99	90.371	ENSACLG00000011188	snrnp200	99	90.262	Astatotilapia_calliptera
ENSFDAG00000004683	SNRNP200	99	90.418	ENSAMXG00000005684	snrnp200	99	90.309	Astyanax_mexicanus
ENSFDAG00000004683	SNRNP200	100	99.251	ENSBTAG00000000848	SNRNP200	100	99.251	Bos_taurus
ENSFDAG00000004683	SNRNP200	100	99.579	ENSCJAG00000007514	SNRNP200	100	99.579	Callithrix_jacchus
ENSFDAG00000004683	SNRNP200	100	98.787	ENSCAFG00020019979	SNRNP200	100	99.533	Canis_lupus_dingo
ENSFDAG00000004683	SNRNP200	100	99.438	ENSCHIG00000020611	SNRNP200	100	99.438	Capra_hircus
ENSFDAG00000004683	SNRNP200	100	99.625	ENSTSYG00000010467	SNRNP200	100	99.625	Carlito_syrichta
ENSFDAG00000004683	SNRNP200	99	99.530	ENSCAPG00000017234	SNRNP200	99	99.530	Cavia_aperea
ENSFDAG00000004683	SNRNP200	100	99.813	ENSCPOG00000006776	SNRNP200	100	99.813	Cavia_porcellus
ENSFDAG00000004683	SNRNP200	100	99.579	ENSCCAG00000033962	SNRNP200	100	99.579	Cebus_capucinus
ENSFDAG00000004683	SNRNP200	100	99.625	ENSCATG00000015790	SNRNP200	100	99.625	Cercocebus_atys
ENSFDAG00000004683	SNRNP200	100	99.766	ENSCLAG00000004116	SNRNP200	100	99.766	Chinchilla_lanigera
ENSFDAG00000004683	SNRNP200	100	99.579	ENSCSAG00000017369	SNRNP200	100	99.579	Chlorocebus_sabaeus
ENSFDAG00000004683	SNRNP200	75	99.213	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSFDAG00000004683	SNRNP200	100	97.522	ENSCPBG00000022571	SNRNP200	100	97.522	Chrysemys_picta_bellii
ENSFDAG00000004683	SNRNP200	99	76.460	ENSCING00000005082	-	99	76.600	Ciona_intestinalis
ENSFDAG00000004683	SNRNP200	100	94.115	ENSCANG00000033932	SNRNP200	100	99.552	Colobus_angolensis_palliatus
ENSFDAG00000004683	SNRNP200	100	99.579	ENSCGRG00001022610	Snrnp200	100	99.579	Cricetulus_griseus_chok1gshd
ENSFDAG00000004683	SNRNP200	100	99.018	ENSCGRG00000016472	Snrnp200	100	99.018	Cricetulus_griseus_crigri
ENSFDAG00000004683	SNRNP200	100	89.794	ENSCSEG00000016399	snrnp200	100	89.794	Cynoglossus_semilaevis
ENSFDAG00000004683	SNRNP200	100	85.440	ENSCVAG00000017631	snrnp200	99	85.440	Cyprinodon_variegatus
ENSFDAG00000004683	SNRNP200	100	90.169	ENSDARG00000077536	snrnp200	99	90.169	Danio_rerio
ENSFDAG00000004683	SNRNP200	100	98.174	ENSDNOG00000011227	SNRNP200	100	98.174	Dasypus_novemcinctus
ENSFDAG00000004683	SNRNP200	100	96.961	ENSDORG00000005861	Snrnp200	100	96.961	Dipodomys_ordii
ENSFDAG00000004683	SNRNP200	100	74.209	FBgn0263599	l(3)72Ab	99	74.115	Drosophila_melanogaster
ENSFDAG00000004683	SNRNP200	95	99.397	ENSETEG00000000162	SNRNP200	74	99.397	Echinops_telfairi
ENSFDAG00000004683	SNRNP200	83	81.256	ENSEBUG00000016524	snrnp200	95	81.256	Eptatretus_burgeri
ENSFDAG00000004683	SNRNP200	100	98.462	ENSEASG00005001884	SNRNP200	100	98.462	Equus_asinus_asinus
ENSFDAG00000004683	SNRNP200	100	99.579	ENSECAG00000019675	SNRNP200	100	99.579	Equus_caballus
ENSFDAG00000004683	SNRNP200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSFDAG00000004683	SNRNP200	99	90.653	ENSELUG00000018948	snrnp200	99	90.543	Esox_lucius
ENSFDAG00000004683	SNRNP200	100	99.625	ENSFCAG00000010699	SNRNP200	100	99.625	Felis_catus
ENSFDAG00000004683	SNRNP200	93	92.857	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSFDAG00000004683	SNRNP200	100	87.640	ENSFHEG00000003786	snrnp200	99	87.640	Fundulus_heteroclitus
ENSFDAG00000004683	SNRNP200	100	89.486	ENSGMOG00000004881	snrnp200	99	89.439	Gadus_morhua
ENSFDAG00000004683	SNRNP200	100	87.875	ENSGAFG00000010807	snrnp200	99	87.875	Gambusia_affinis
ENSFDAG00000004683	SNRNP200	100	89.771	ENSGACG00000011474	snrnp200	99	89.678	Gasterosteus_aculeatus
ENSFDAG00000004683	SNRNP200	95	97.429	ENSGAGG00000016069	SNRNP200	99	97.429	Gopherus_agassizii
ENSFDAG00000004683	SNRNP200	100	99.625	ENSGGOG00000005174	SNRNP200	100	99.625	Gorilla_gorilla
ENSFDAG00000004683	SNRNP200	97	87.620	ENSHBUG00000011322	snrnp200	99	87.667	Haplochromis_burtoni
ENSFDAG00000004683	SNRNP200	100	99.906	ENSHGLG00000006654	SNRNP200	100	99.906	Heterocephalus_glaber_female
ENSFDAG00000004683	SNRNP200	100	99.906	ENSHGLG00100018594	SNRNP200	100	99.906	Heterocephalus_glaber_male
ENSFDAG00000004683	SNRNP200	100	99.579	ENSSTOG00000016351	SNRNP200	100	99.579	Ictidomys_tridecemlineatus
ENSFDAG00000004683	SNRNP200	100	99.391	ENSJJAG00000023659	Snrnp200	100	99.391	Jaculus_jaculus
ENSFDAG00000004683	SNRNP200	100	87.354	ENSKMAG00000003665	snrnp200	99	87.354	Kryptolebias_marmoratus
ENSFDAG00000004683	SNRNP200	100	90.075	ENSLBEG00000021585	snrnp200	99	90.075	Labrus_bergylta
ENSFDAG00000004683	SNRNP200	82	94.550	ENSLACG00000000226	SNRNP200	99	94.550	Latimeria_chalumnae
ENSFDAG00000004683	SNRNP200	100	92.088	ENSLOCG00000015198	snrnp200	99	92.088	Lepisosteus_oculatus
ENSFDAG00000004683	SNRNP200	100	99.298	ENSLAFG00000015626	SNRNP200	100	99.298	Loxodonta_africana
ENSFDAG00000004683	SNRNP200	100	99.579	ENSMFAG00000040174	SNRNP200	100	99.579	Macaca_fascicularis
ENSFDAG00000004683	SNRNP200	100	99.579	ENSMMUG00000023261	SNRNP200	100	99.579	Macaca_mulatta
ENSFDAG00000004683	SNRNP200	100	99.532	ENSMNEG00000032398	SNRNP200	100	99.532	Macaca_nemestrina
ENSFDAG00000004683	SNRNP200	100	99.625	ENSMLEG00000019083	SNRNP200	100	99.625	Mandrillus_leucophaeus
ENSFDAG00000004683	SNRNP200	100	90.080	ENSMAMG00000007851	snrnp200	99	90.033	Mastacembelus_armatus
ENSFDAG00000004683	SNRNP200	97	87.620	ENSMZEG00005010787	snrnp200	99	87.667	Maylandia_zebra
ENSFDAG00000004683	SNRNP200	97	97.049	ENSMGAG00000001831	SNRNP200	100	97.049	Meleagris_gallopavo
ENSFDAG00000004683	SNRNP200	100	99.532	ENSMAUG00000011825	Snrnp200	100	99.532	Mesocricetus_auratus
ENSFDAG00000004683	SNRNP200	100	99.579	ENSMICG00000004710	SNRNP200	100	99.579	Microcebus_murinus
ENSFDAG00000004683	SNRNP200	100	96.957	ENSMOCG00000011814	Snrnp200	100	96.957	Microtus_ochrogaster
ENSFDAG00000004683	SNRNP200	99	88.868	ENSMMOG00000014167	snrnp200	99	88.764	Mola_mola
ENSFDAG00000004683	SNRNP200	100	98.783	ENSMODG00000008475	SNRNP200	100	98.783	Monodelphis_domestica
ENSFDAG00000004683	SNRNP200	99	90.606	ENSMALG00000001973	snrnp200	99	90.496	Monopterus_albus
ENSFDAG00000004683	SNRNP200	100	99.345	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.345	Mus_caroli
ENSFDAG00000004683	SNRNP200	100	99.391	ENSMUSG00000003660	Snrnp200	100	99.391	Mus_musculus
ENSFDAG00000004683	SNRNP200	100	99.438	MGP_PahariEiJ_G0025695	Snrnp200	100	99.438	Mus_pahari
ENSFDAG00000004683	SNRNP200	100	99.391	MGP_SPRETEiJ_G0025170	Snrnp200	100	99.448	Mus_spretus
ENSFDAG00000004683	SNRNP200	100	99.532	ENSMPUG00000008949	SNRNP200	100	99.532	Mustela_putorius_furo
ENSFDAG00000004683	SNRNP200	100	95.272	ENSMLUG00000027511	-	100	95.272	Myotis_lucifugus
ENSFDAG00000004683	SNRNP200	100	98.971	ENSMLUG00000010493	SNRNP200	100	98.971	Myotis_lucifugus
ENSFDAG00000004683	SNRNP200	100	99.625	ENSNGAG00000021993	Snrnp200	100	99.625	Nannospalax_galili
ENSFDAG00000004683	SNRNP200	90	90.145	ENSNBRG00000017960	snrnp200	98	90.145	Neolamprologus_brichardi
ENSFDAG00000004683	SNRNP200	100	94.979	ENSNLEG00000000025	SNRNP200	100	95.289	Nomascus_leucogenys
ENSFDAG00000004683	SNRNP200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSFDAG00000004683	SNRNP200	100	95.693	ENSOPRG00000015464	SNRNP200	100	95.693	Ochotona_princeps
ENSFDAG00000004683	SNRNP200	100	99.766	ENSODEG00000008366	SNRNP200	100	99.766	Octodon_degus
ENSFDAG00000004683	SNRNP200	99	90.371	ENSONIG00000010714	snrnp200	99	90.262	Oreochromis_niloticus
ENSFDAG00000004683	SNRNP200	100	99.485	ENSOCUG00000009864	SNRNP200	100	99.485	Oryctolagus_cuniculus
ENSFDAG00000004683	SNRNP200	100	90.122	ENSORLG00000012286	snrnp200	100	90.122	Oryzias_latipes
ENSFDAG00000004683	SNRNP200	100	90.169	ENSORLG00020004648	snrnp200	100	90.169	Oryzias_latipes_hni
ENSFDAG00000004683	SNRNP200	100	90.122	ENSORLG00015019114	snrnp200	100	90.134	Oryzias_latipes_hsok
ENSFDAG00000004683	SNRNP200	99	90.371	ENSOMEG00000011834	snrnp200	99	90.262	Oryzias_melastigma
ENSFDAG00000004683	SNRNP200	100	99.625	ENSOGAG00000006879	SNRNP200	100	99.625	Otolemur_garnettii
ENSFDAG00000004683	SNRNP200	100	98.409	ENSOARG00000013949	SNRNP200	100	98.409	Ovis_aries
ENSFDAG00000004683	SNRNP200	100	99.625	ENSPPAG00000041559	SNRNP200	100	99.625	Pan_paniscus
ENSFDAG00000004683	SNRNP200	100	99.625	ENSPPRG00000004435	SNRNP200	100	99.625	Panthera_pardus
ENSFDAG00000004683	SNRNP200	100	99.157	ENSPTIG00000006380	SNRNP200	100	99.157	Panthera_tigris_altaica
ENSFDAG00000004683	SNRNP200	100	99.625	ENSPTRG00000012230	SNRNP200	100	99.625	Pan_troglodytes
ENSFDAG00000004683	SNRNP200	100	99.672	ENSPANG00000006017	SNRNP200	100	99.672	Papio_anubis
ENSFDAG00000004683	SNRNP200	100	90.918	ENSPKIG00000014762	snrnp200	99	90.918	Paramormyrops_kingsleyae
ENSFDAG00000004683	SNRNP200	100	96.490	ENSPSIG00000008580	SNRNP200	100	96.490	Pelodiscus_sinensis
ENSFDAG00000004683	SNRNP200	100	98.736	ENSPCIG00000023050	SNRNP200	100	98.736	Phascolarctos_cinereus
ENSFDAG00000004683	SNRNP200	100	90.173	ENSPFOG00000015110	snrnp200	99	90.173	Poecilia_formosa
ENSFDAG00000004683	SNRNP200	97	90.055	ENSPLAG00000006711	snrnp200	99	90.055	Poecilia_latipinna
ENSFDAG00000004683	SNRNP200	97	90.000	ENSPMEG00000021166	snrnp200	99	90.000	Poecilia_mexicana
ENSFDAG00000004683	SNRNP200	100	90.262	ENSPREG00000008875	snrnp200	99	90.262	Poecilia_reticulata
ENSFDAG00000004683	SNRNP200	100	99.625	ENSPPYG00000012068	SNRNP200	100	99.625	Pongo_abelii
ENSFDAG00000004683	SNRNP200	97	97.436	ENSPCAG00000008536	SNRNP200	89	97.436	Procavia_capensis
ENSFDAG00000004683	SNRNP200	100	99.625	ENSPCOG00000024608	SNRNP200	100	99.625	Propithecus_coquereli
ENSFDAG00000004683	SNRNP200	96	100.000	ENSPVAG00000005860	SNRNP200	93	100.000	Pteropus_vampyrus
ENSFDAG00000004683	SNRNP200	99	85.855	ENSPNYG00000017476	snrnp200	99	85.761	Pundamilia_nyererei
ENSFDAG00000004683	SNRNP200	100	85.908	ENSPNAG00000010998	snrnp200	99	85.908	Pygocentrus_nattereri
ENSFDAG00000004683	SNRNP200	100	99.532	ENSRNOG00000012157	Snrnp200	100	99.532	Rattus_norvegicus
ENSFDAG00000004683	SNRNP200	100	99.625	ENSRBIG00000044690	-	100	99.625	Rhinopithecus_bieti
ENSFDAG00000004683	SNRNP200	100	99.625	ENSRROG00000037952	-	100	99.625	Rhinopithecus_roxellana
ENSFDAG00000004683	SNRNP200	100	99.579	ENSSBOG00000035471	SNRNP200	100	99.579	Saimiri_boliviensis_boliviensis
ENSFDAG00000004683	SNRNP200	97	98.645	ENSSHAG00000000758	SNRNP200	100	98.645	Sarcophilus_harrisii
ENSFDAG00000004683	SNRNP200	99	91.498	ENSSFOG00015018826	snrnp200	99	91.386	Scleropages_formosus
ENSFDAG00000004683	SNRNP200	99	90.277	ENSSMAG00000005463	snrnp200	99	90.169	Scophthalmus_maximus
ENSFDAG00000004683	SNRNP200	99	90.559	ENSSDUG00000021410	snrnp200	99	90.449	Seriola_dumerili
ENSFDAG00000004683	SNRNP200	99	90.512	ENSSLDG00000010884	snrnp200	99	90.403	Seriola_lalandi_dorsalis
ENSFDAG00000004683	SNRNP200	95	99.196	ENSSARG00000010728	SNRNP200	96	99.196	Sorex_araneus
ENSFDAG00000004683	SNRNP200	100	97.285	ENSSPUG00000003726	-	100	97.285	Sphenodon_punctatus
ENSFDAG00000004683	SNRNP200	99	90.606	ENSSPAG00000001842	snrnp200	99	90.496	Stegastes_partitus
ENSFDAG00000004683	SNRNP200	100	99.438	ENSSSCG00000008127	SNRNP200	100	99.438	Sus_scrofa
ENSFDAG00000004683	SNRNP200	99	87.853	ENSTGUG00000014475	-	100	87.853	Taeniopygia_guttata
ENSFDAG00000004683	SNRNP200	99	90.230	ENSTRUG00000001307	snrnp200	99	90.122	Takifugu_rubripes
ENSFDAG00000004683	SNRNP200	100	85.724	ENSTNIG00000004320	snrnp200	100	85.724	Tetraodon_nigroviridis
ENSFDAG00000004683	SNRNP200	82	100.000	ENSTBEG00000003329	-	67	100.000	Tupaia_belangeri
ENSFDAG00000004683	SNRNP200	100	99.251	ENSTTRG00000004983	SNRNP200	100	99.251	Tursiops_truncatus
ENSFDAG00000004683	SNRNP200	75	92.636	ENSUAMG00000008395	-	95	92.636	Ursus_americanus
ENSFDAG00000004683	SNRNP200	100	99.625	ENSUMAG00000012385	SNRNP200	100	99.625	Ursus_maritimus
ENSFDAG00000004683	SNRNP200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSFDAG00000004683	SNRNP200	100	99.393	ENSVVUG00000026247	SNRNP200	100	99.393	Vulpes_vulpes
ENSFDAG00000004683	SNRNP200	100	94.203	ENSXETG00000001243	snrnp200	100	94.203	Xenopus_tropicalis
ENSFDAG00000004683	SNRNP200	97	90.310	ENSXMAG00000002058	snrnp200	98	90.310	Xiphophorus_maculatus