EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFDAG00000006393 (Gene tree)
Gene ID: 104875278
Gene Symbol: -
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 19860 bases
Position: chrKN123370.1:294728-314587
Accession: 104875278
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000006380	PPR	PF01535.20	6.2e-16	1	2
ENSFDAP00000006380	PPR	PF01535.20	6.2e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000019698	-	2412	XM_010642727	ENSFDAP00000006380	702 (aa)	XP_010641029	UPI00054010CE

Gene Model

Click here to download ENSFDAG00000006393's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000006393's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000006393	-	100	75.779	ENSG00000248919	ATP5MF-PTCD1	93	75.921	Homo_sapiens
ENSFDAG00000006393	-	100	75.779	ENSG00000106246	PTCD1	100	75.921	Homo_sapiens
ENSFDAG00000006393	-	81	48.517	ENSAPOG00000010679	ptcd1	87	48.517	Acanthochromis_polyacanthus
ENSFDAG00000006393	-	100	77.730	ENSAMEG00000006224	-	93	77.730	Ailuropoda_melanoleuca
ENSFDAG00000006393	-	87	49.271	ENSACIG00000017861	ptcd1	88	48.947	Amphilophus_citrinellus
ENSFDAG00000006393	-	92	46.777	ENSAOCG00000020741	-	91	46.777	Amphiprion_ocellaris
ENSFDAG00000006393	-	84	47.833	ENSAOCG00000022617	ptcd1	86	47.746	Amphiprion_ocellaris
ENSFDAG00000006393	-	95	46.097	ENSAPEG00000022632	ptcd1	94	46.097	Amphiprion_percula
ENSFDAG00000006393	-	83	50.764	ENSATEG00000007016	ptcd1	80	50.427	Anabas_testudineus
ENSFDAG00000006393	-	84	60.134	ENSAPLG00000006862	-	93	60.504	Anas_platyrhynchos
ENSFDAG00000006393	-	100	54.924	ENSACAG00000012871	-	93	54.848	Anolis_carolinensis
ENSFDAG00000006393	-	98	75.109	ENSANAG00000035790	-	100	75.253	Aotus_nancymaae
ENSFDAG00000006393	-	85	48.684	ENSACLG00000002824	ptcd1	80	49.073	Astatotilapia_calliptera
ENSFDAG00000006393	-	86	47.854	ENSAMXG00000037292	ptcd1	86	48.065	Astyanax_mexicanus
ENSFDAG00000006393	-	100	75.637	ENSBTAG00000020440	-	87	75.921	Bos_taurus
ENSFDAG00000006393	-	100	74.682	ENSCJAG00000015815	-	100	74.823	Callithrix_jacchus
ENSFDAG00000006393	-	100	76.771	ENSCAFG00000015055	-	93	76.771	Canis_familiaris
ENSFDAG00000006393	-	100	76.912	ENSCAFG00020014480	-	93	76.912	Canis_lupus_dingo
ENSFDAG00000006393	-	100	75.354	ENSCHIG00000027000	-	99	75.637	Capra_hircus
ENSFDAG00000006393	-	100	77.479	ENSTSYG00000029495	-	100	78.045	Carlito_syrichta
ENSFDAG00000006393	-	93	82.371	ENSCAPG00000014660	-	100	82.371	Cavia_aperea
ENSFDAG00000006393	-	100	83.121	ENSCPOG00000001780	-	100	83.121	Cavia_porcellus
ENSFDAG00000006393	-	100	73.729	ENSCCAG00000034025	-	100	73.729	Cebus_capucinus
ENSFDAG00000006393	-	100	75.603	ENSCATG00000040859	-	100	75.745	Cercocebus_atys
ENSFDAG00000006393	-	98	85.239	ENSCLAG00000006354	-	100	84.965	Chinchilla_lanigera
ENSFDAG00000006393	-	91	75.504	ENSCSAG00000017794	-	95	75.659	Chlorocebus_sabaeus
ENSFDAG00000006393	-	89	57.424	ENSCPBG00000020866	-	85	58.583	Chrysemys_picta_bellii
ENSFDAG00000006393	-	100	75.676	ENSCANG00000023441	-	100	75.676	Colobus_angolensis_palliatus
ENSFDAG00000006393	-	100	73.438	ENSCGRG00001023686	Ptcd1	100	73.438	Cricetulus_griseus_chok1gshd
ENSFDAG00000006393	-	99	73.833	ENSCGRG00000015031	Ptcd1	100	73.833	Cricetulus_griseus_crigri
ENSFDAG00000006393	-	84	47.324	ENSCSEG00000002378	ptcd1	80	48.041	Cynoglossus_semilaevis
ENSFDAG00000006393	-	83	48.822	ENSCVAG00000015826	ptcd1	81	48.571	Cyprinodon_variegatus
ENSFDAG00000006393	-	84	48.586	ENSCVAG00000003621	ptcd1	87	48.339	Cyprinodon_variegatus
ENSFDAG00000006393	-	87	48.950	ENSDARG00000076176	ptcd1	87	49.103	Danio_rerio
ENSFDAG00000006393	-	100	74.894	ENSDNOG00000009957	-	100	75.035	Dasypus_novemcinctus
ENSFDAG00000006393	-	99	74.605	ENSDORG00000000740	Ptcd1	100	74.749	Dipodomys_ordii
ENSFDAG00000006393	-	92	40.514	ENSEBUG00000014515	ptcd1	97	42.784	Eptatretus_burgeri
ENSFDAG00000006393	-	100	77.918	ENSEASG00005002480	-	100	78.340	Equus_asinus_asinus
ENSFDAG00000006393	-	100	78.451	ENSECAG00000016617	-	100	78.873	Equus_caballus
ENSFDAG00000006393	-	87	46.923	ENSELUG00000016517	ptcd1	82	47.428	Esox_lucius
ENSFDAG00000006393	-	100	76.912	ENSFCAG00000015069	-	100	76.912	Felis_catus
ENSFDAG00000006393	-	94	56.934	ENSFALG00000013803	-	94	57.496	Ficedula_albicollis
ENSFDAG00000006393	-	75	48.037	ENSFHEG00000012491	ptcd1	88	47.048	Fundulus_heteroclitus
ENSFDAG00000006393	-	82	47.423	ENSGMOG00000007639	ptcd1	91	46.907	Gadus_morhua
ENSFDAG00000006393	-	84	58.995	ENSGALG00000004711	-	85	59.157	Gallus_gallus
ENSFDAG00000006393	-	84	49.336	ENSGAFG00000013175	ptcd1	82	49.249	Gambusia_affinis
ENSFDAG00000006393	-	86	48.450	ENSGACG00000016607	ptcd1	88	49.241	Gasterosteus_aculeatus
ENSFDAG00000006393	-	82	58.234	ENSGAGG00000021832	-	84	60.071	Gopherus_agassizii
ENSFDAG00000006393	-	99	75.461	ENSGGOG00000015123	-	99	75.603	Gorilla_gorilla
ENSFDAG00000006393	-	85	48.214	ENSHBUG00000018275	ptcd1	80	48.419	Haplochromis_burtoni
ENSFDAG00000006393	-	100	87.624	ENSHGLG00000017621	-	100	87.624	Heterocephalus_glaber_female
ENSFDAG00000006393	-	100	87.624	ENSHGLG00100007218	-	100	87.624	Heterocephalus_glaber_male
ENSFDAG00000006393	-	88	45.203	ENSHCOG00000010784	ptcd1	82	46.484	Hippocampus_comes
ENSFDAG00000006393	-	100	75.211	ENSSTOG00000001682	-	100	75.493	Ictidomys_tridecemlineatus
ENSFDAG00000006393	-	100	74.858	ENSJJAG00000000319	Ptcd1	100	74.858	Jaculus_jaculus
ENSFDAG00000006393	-	84	48.161	ENSKMAG00000008708	ptcd1	80	49.063	Kryptolebias_marmoratus
ENSFDAG00000006393	-	89	47.377	ENSLBEG00000008061	ptcd1	86	46.677	Labrus_bergylta
ENSFDAG00000006393	-	86	57.624	ENSLACG00000011172	ptcd1	84	57.912	Latimeria_chalumnae
ENSFDAG00000006393	-	89	53.470	ENSLOCG00000004833	ptcd1	95	54.472	Lepisosteus_oculatus
ENSFDAG00000006393	-	100	71.167	ENSLAFG00000002588	-	100	71.589	Loxodonta_africana
ENSFDAG00000006393	-	100	75.461	ENSMFAG00000041324	-	100	75.603	Macaca_fascicularis
ENSFDAG00000006393	-	100	75.319	ENSMMUG00000030408	-	100	75.461	Macaca_mulatta
ENSFDAG00000006393	-	100	75.461	ENSMNEG00000043786	-	100	75.603	Macaca_nemestrina
ENSFDAG00000006393	-	100	57.447	ENSMLEG00000031179	-	100	59.574	Mandrillus_leucophaeus
ENSFDAG00000006393	-	95	47.153	ENSMAMG00000007623	ptcd1	91	47.345	Mastacembelus_armatus
ENSFDAG00000006393	-	85	48.684	ENSMZEG00005012722	ptcd1	80	48.590	Maylandia_zebra
ENSFDAG00000006393	-	97	55.556	ENSMGAG00000004211	-	91	55.840	Meleagris_gallopavo
ENSFDAG00000006393	-	100	75.603	ENSMICG00000017428	-	100	75.779	Microcebus_murinus
ENSFDAG00000006393	-	85	47.030	ENSMMOG00000020243	ptcd1	91	47.049	Mola_mola
ENSFDAG00000006393	-	99	59.456	ENSMODG00000001350	-	99	59.184	Monodelphis_domestica
ENSFDAG00000006393	-	84	49.670	ENSMALG00000018442	ptcd1	80	49.916	Monopterus_albus
ENSFDAG00000006393	-	99	76.074	MGP_CAROLIEiJ_G0028011	Ptcd1	99	76.074	Mus_caroli
ENSFDAG00000006393	-	99	75.358	ENSMUSG00000029624	Ptcd1	99	75.358	Mus_musculus
ENSFDAG00000006393	-	99	75.501	MGP_PahariEiJ_G0024580	Ptcd1	99	75.501	Mus_pahari
ENSFDAG00000006393	-	99	75.931	MGP_SPRETEiJ_G0029012	Ptcd1	99	75.931	Mus_spretus
ENSFDAG00000006393	-	100	77.163	ENSMPUG00000016518	-	100	77.447	Mustela_putorius_furo
ENSFDAG00000006393	-	100	79.408	ENSMLUG00000010994	-	94	79.972	Myotis_lucifugus
ENSFDAG00000006393	-	89	47.799	ENSNBRG00000010079	ptcd1	89	47.799	Neolamprologus_brichardi
ENSFDAG00000006393	-	100	78.584	ENSNLEG00000011060	-	100	78.584	Nomascus_leucogenys
ENSFDAG00000006393	-	97	61.693	ENSMEUG00000006930	-	99	61.549	Notamacropus_eugenii
ENSFDAG00000006393	-	90	73.953	ENSOPRG00000013647	-	90	73.953	Ochotona_princeps
ENSFDAG00000006393	-	83	47.731	ENSONIG00000003168	ptcd1	94	47.555	Oreochromis_niloticus
ENSFDAG00000006393	-	80	58.099	ENSOANG00000007728	-	73	57.857	Ornithorhynchus_anatinus
ENSFDAG00000006393	-	99	74.148	ENSOCUG00000010584	-	98	74.148	Oryctolagus_cuniculus
ENSFDAG00000006393	-	83	48.908	ENSORLG00000009275	ptcd1	83	49.069	Oryzias_latipes
ENSFDAG00000006393	-	83	48.739	ENSORLG00020000988	ptcd1	83	48.900	Oryzias_latipes_hni
ENSFDAG00000006393	-	83	48.067	ENSORLG00015010557	ptcd1	83	48.223	Oryzias_latipes_hsok
ENSFDAG00000006393	-	90	47.956	ENSOMEG00000020627	ptcd1	92	47.956	Oryzias_melastigma
ENSFDAG00000006393	-	99	73.104	ENSOGAG00000010877	-	99	73.391	Otolemur_garnettii
ENSFDAG00000006393	-	100	71.146	ENSOARG00000018676	-	100	71.429	Ovis_aries
ENSFDAG00000006393	-	100	75.177	ENSPPAG00000036024	-	100	75.319	Pan_paniscus
ENSFDAG00000006393	-	100	77.447	ENSPPRG00000003478	-	100	77.447	Panthera_pardus
ENSFDAG00000006393	-	100	75.177	ENSPTRG00000019452	-	100	75.319	Pan_troglodytes
ENSFDAG00000006393	-	100	75.603	ENSPANG00000016730	-	100	75.745	Papio_anubis
ENSFDAG00000006393	-	94	50.898	ENSPKIG00000014215	ptcd1	87	53.783	Paramormyrops_kingsleyae
ENSFDAG00000006393	-	84	57.331	ENSPSIG00000011184	-	100	58.224	Pelodiscus_sinensis
ENSFDAG00000006393	-	73	43.487	ENSPMAG00000009667	ptcd1	100	42.885	Petromyzon_marinus
ENSFDAG00000006393	-	99	60.816	ENSPCIG00000024778	-	99	60.816	Phascolarctos_cinereus
ENSFDAG00000006393	-	86	48.071	ENSPFOG00000004458	ptcd1	84	48.071	Poecilia_formosa
ENSFDAG00000006393	-	84	48.675	ENSPLAG00000011051	ptcd1	82	48.918	Poecilia_latipinna
ENSFDAG00000006393	-	86	48.232	ENSPMEG00000020547	ptcd1	84	48.232	Poecilia_mexicana
ENSFDAG00000006393	-	83	48.398	ENSPREG00000000059	ptcd1	82	48.067	Poecilia_reticulata
ENSFDAG00000006393	-	94	76.935	ENSPPYG00000017377	-	99	76.935	Pongo_abelii
ENSFDAG00000006393	-	81	74.648	ENSPCAG00000001852	-	89	74.648	Procavia_capensis
ENSFDAG00000006393	-	98	76.990	ENSPCOG00000018596	-	98	77.168	Propithecus_coquereli
ENSFDAG00000006393	-	67	90.000	ENSPVAG00000007529	-	71	90.000	Pteropus_vampyrus
ENSFDAG00000006393	-	85	48.764	ENSPNYG00000019993	ptcd1	80	49.073	Pundamilia_nyererei
ENSFDAG00000006393	-	88	51.343	ENSPNAG00000014931	ptcd1	92	50.230	Pygocentrus_nattereri
ENSFDAG00000006393	-	99	74.928	ENSRNOG00000000987	Ptcd1	99	74.928	Rattus_norvegicus
ENSFDAG00000006393	-	100	75.818	ENSRBIG00000043393	-	100	75.818	Rhinopithecus_bieti
ENSFDAG00000006393	-	100	75.391	ENSRROG00000036420	-	100	75.391	Rhinopithecus_roxellana
ENSFDAG00000006393	-	100	75.212	ENSSBOG00000024114	-	100	75.354	Saimiri_boliviensis_boliviensis
ENSFDAG00000006393	-	99	58.288	ENSSHAG00000011376	-	96	63.679	Sarcophilus_harrisii
ENSFDAG00000006393	-	92	51.259	ENSSFOG00015007909	ptcd1	85	53.302	Scleropages_formosus
ENSFDAG00000006393	-	87	45.981	ENSSMAG00000000218	ptcd1	94	46.117	Scophthalmus_maximus
ENSFDAG00000006393	-	87	48.309	ENSSDUG00000015671	ptcd1	86	48.148	Seriola_dumerili
ENSFDAG00000006393	-	87	47.847	ENSSLDG00000014261	ptcd1	86	47.068	Seriola_lalandi_dorsalis
ENSFDAG00000006393	-	92	53.754	ENSSPUG00000003540	-	90	53.754	Sphenodon_punctatus
ENSFDAG00000006393	-	88	47.881	ENSSPAG00000011049	ptcd1	84	47.799	Stegastes_partitus
ENSFDAG00000006393	-	92	79.263	ENSSSCG00000007622	-	99	78.582	Sus_scrofa
ENSFDAG00000006393	-	86	60.164	ENSTGUG00000007563	-	98	60.899	Taeniopygia_guttata
ENSFDAG00000006393	-	84	47.913	ENSTRUG00000013471	ptcd1	79	48.299	Takifugu_rubripes
ENSFDAG00000006393	-	85	48.590	ENSTNIG00000008271	ptcd1	83	49.063	Tetraodon_nigroviridis
ENSFDAG00000006393	-	100	75.141	ENSTBEG00000011021	-	100	75.141	Tupaia_belangeri
ENSFDAG00000006393	-	100	75.461	ENSTTRG00000003006	-	100	75.461	Tursiops_truncatus
ENSFDAG00000006393	-	100	77.872	ENSUAMG00000008049	-	100	77.872	Ursus_americanus
ENSFDAG00000006393	-	99	76.529	ENSVVUG00000008836	-	100	76.529	Vulpes_vulpes
ENSFDAG00000006393	-	84	52.694	ENSXETG00000009891	ptcd1	88	51.639	Xenopus_tropicalis
ENSFDAG00000006393	-	84	48.822	ENSXMAG00000015540	ptcd1	82	48.731	Xiphophorus_maculatus