EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFDAG00000007661 (Gene tree)
Gene ID: 104869574
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 5516 bases
Position: chrKN122676.1:4786694-4792209
Accession: 104869574
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000021498	LSM	PF01423.22	2.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000027799	LSM7-201	472	XM_010634880	ENSFDAP00000021498	96 (aa)	XP_010633182	-

Gene Model

Click here to download ENSFDAG00000007661's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000007661's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFDAG00000007661	LSM7	74	36.620	ENSFDAG00000012567	-	83	36.620
ENSFDAG00000007661	LSM7	77	35.526	ENSFDAG00000019530	LSM8	73	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000007661	LSM7	100	100.000	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSFDAG00000007661	LSM7	90	95.349	ENSAPOG00000015573	lsm7	77	95.506	Acanthochromis_polyacanthus
ENSFDAG00000007661	LSM7	100	98.958	ENSAMEG00000005484	LSM7	93	98.958	Ailuropoda_melanoleuca
ENSFDAG00000007661	LSM7	96	95.652	ENSACIG00000006498	lsm7	73	95.652	Amphilophus_citrinellus
ENSFDAG00000007661	LSM7	97	94.624	ENSAOCG00000001077	lsm7	87	94.792	Amphiprion_ocellaris
ENSFDAG00000007661	LSM7	100	94.792	ENSAPEG00000024447	lsm7	87	94.792	Amphiprion_percula
ENSFDAG00000007661	LSM7	100	94.792	ENSAPEG00000000694	lsm7	93	94.792	Amphiprion_percula
ENSFDAG00000007661	LSM7	100	94.792	ENSATEG00000008557	lsm7	93	94.792	Anabas_testudineus
ENSFDAG00000007661	LSM7	100	90.625	ENSANAG00000022222	-	93	90.625	Aotus_nancymaae
ENSFDAG00000007661	LSM7	100	100.000	ENSANAG00000037196	-	93	100.000	Aotus_nancymaae
ENSFDAG00000007661	LSM7	100	94.792	ENSACLG00000021021	lsm7	93	94.792	Astatotilapia_calliptera
ENSFDAG00000007661	LSM7	100	94.792	ENSAMXG00000037622	lsm7	93	94.792	Astyanax_mexicanus
ENSFDAG00000007661	LSM7	100	100.000	ENSBTAG00000004521	LSM7	93	100.000	Bos_taurus
ENSFDAG00000007661	LSM7	99	57.895	WBGene00003081	lsm-7	91	57.895	Caenorhabditis_elegans
ENSFDAG00000007661	LSM7	51	100.000	ENSCJAG00000039713	-	60	100.000	Callithrix_jacchus
ENSFDAG00000007661	LSM7	100	98.958	ENSCAFG00000019409	LSM7	93	98.958	Canis_familiaris
ENSFDAG00000007661	LSM7	100	98.958	ENSCAFG00020018168	LSM7	71	98.958	Canis_lupus_dingo
ENSFDAG00000007661	LSM7	100	100.000	ENSCHIG00000023663	LSM7	93	100.000	Capra_hircus
ENSFDAG00000007661	LSM7	74	100.000	ENSCAPG00000014534	LSM7	100	100.000	Cavia_aperea
ENSFDAG00000007661	LSM7	100	100.000	ENSCPOG00000014025	LSM7	95	100.000	Cavia_porcellus
ENSFDAG00000007661	LSM7	100	100.000	ENSCCAG00000035456	LSM7	94	100.000	Cebus_capucinus
ENSFDAG00000007661	LSM7	100	100.000	ENSCATG00000023543	LSM7	93	100.000	Cercocebus_atys
ENSFDAG00000007661	LSM7	100	100.000	ENSCLAG00000011635	LSM7	93	100.000	Chinchilla_lanigera
ENSFDAG00000007661	LSM7	100	100.000	ENSCSAG00000011599	LSM7	93	100.000	Chlorocebus_sabaeus
ENSFDAG00000007661	LSM7	75	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSFDAG00000007661	LSM7	97	81.720	ENSCING00000022134	-	94	81.720	Ciona_intestinalis
ENSFDAG00000007661	LSM7	100	100.000	ENSCANG00000035525	LSM7	93	100.000	Colobus_angolensis_palliatus
ENSFDAG00000007661	LSM7	89	88.235	ENSCGRG00001016005	-	86	88.235	Cricetulus_griseus_chok1gshd
ENSFDAG00000007661	LSM7	100	98.958	ENSCGRG00001000807	-	93	98.958	Cricetulus_griseus_chok1gshd
ENSFDAG00000007661	LSM7	100	98.958	ENSCGRG00000014355	-	92	98.958	Cricetulus_griseus_crigri
ENSFDAG00000007661	LSM7	89	88.235	ENSCGRG00000006821	-	86	88.235	Cricetulus_griseus_crigri
ENSFDAG00000007661	LSM7	100	94.792	ENSCSEG00000014900	lsm7	81	94.792	Cynoglossus_semilaevis
ENSFDAG00000007661	LSM7	100	95.833	ENSCVAG00000021091	lsm7	89	95.833	Cyprinodon_variegatus
ENSFDAG00000007661	LSM7	100	95.833	ENSDARG00000058328	lsm7	93	95.833	Danio_rerio
ENSFDAG00000007661	LSM7	100	97.917	ENSDORG00000024460	Lsm7	94	97.917	Dipodomys_ordii
ENSFDAG00000007661	LSM7	97	76.596	FBgn0261068	LSm7	85	76.596	Drosophila_melanogaster
ENSFDAG00000007661	LSM7	100	96.875	ENSETEG00000012788	LSM7	94	96.875	Echinops_telfairi
ENSFDAG00000007661	LSM7	86	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSFDAG00000007661	LSM7	100	86.458	ENSEBUG00000016992	lsm7	92	86.458	Eptatretus_burgeri
ENSFDAG00000007661	LSM7	97	95.699	ENSECAG00000001440	LSM7	62	95.833	Equus_caballus
ENSFDAG00000007661	LSM7	100	98.958	ENSFCAG00000003445	LSM7	93	98.958	Felis_catus
ENSFDAG00000007661	LSM7	100	96.875	ENSFALG00000011912	LSM7	95	96.875	Ficedula_albicollis
ENSFDAG00000007661	LSM7	100	95.833	ENSFHEG00000006349	lsm7	86	95.833	Fundulus_heteroclitus
ENSFDAG00000007661	LSM7	100	92.708	ENSGMOG00000013320	lsm7	93	92.708	Gadus_morhua
ENSFDAG00000007661	LSM7	100	95.833	ENSGAFG00000013902	lsm7	93	95.833	Gambusia_affinis
ENSFDAG00000007661	LSM7	100	93.750	ENSGACG00000010390	lsm7	93	93.750	Gasterosteus_aculeatus
ENSFDAG00000007661	LSM7	100	100.000	ENSGGOG00000010172	LSM7	93	100.000	Gorilla_gorilla
ENSFDAG00000007661	LSM7	100	94.792	ENSHBUG00000004616	lsm7	93	94.792	Haplochromis_burtoni
ENSFDAG00000007661	LSM7	100	100.000	ENSHGLG00000010587	LSM7	93	100.000	Heterocephalus_glaber_female
ENSFDAG00000007661	LSM7	100	100.000	ENSHGLG00100000852	LSM7	93	100.000	Heterocephalus_glaber_male
ENSFDAG00000007661	LSM7	100	94.792	ENSHCOG00000020252	lsm7	95	94.792	Hippocampus_comes
ENSFDAG00000007661	LSM7	100	94.792	ENSIPUG00000024724	lsm7	93	94.792	Ictalurus_punctatus
ENSFDAG00000007661	LSM7	100	100.000	ENSSTOG00000028372	LSM7	94	100.000	Ictidomys_tridecemlineatus
ENSFDAG00000007661	LSM7	100	97.917	ENSJJAG00000001936	Lsm7	93	97.917	Jaculus_jaculus
ENSFDAG00000007661	LSM7	100	95.833	ENSKMAG00000022151	lsm7	93	95.833	Kryptolebias_marmoratus
ENSFDAG00000007661	LSM7	100	94.792	ENSLBEG00000005203	lsm7	93	94.792	Labrus_bergylta
ENSFDAG00000007661	LSM7	100	98.958	ENSLACG00000015700	LSM7	93	98.958	Latimeria_chalumnae
ENSFDAG00000007661	LSM7	100	97.917	ENSLOCG00000004356	lsm7	93	97.917	Lepisosteus_oculatus
ENSFDAG00000007661	LSM7	100	100.000	ENSLAFG00000029302	LSM7	93	100.000	Loxodonta_africana
ENSFDAG00000007661	LSM7	100	100.000	ENSMFAG00000044572	LSM7	93	100.000	Macaca_fascicularis
ENSFDAG00000007661	LSM7	100	100.000	ENSMMUG00000000452	LSM7	94	100.000	Macaca_mulatta
ENSFDAG00000007661	LSM7	100	100.000	ENSMNEG00000004393	LSM7	93	100.000	Macaca_nemestrina
ENSFDAG00000007661	LSM7	100	100.000	ENSMLEG00000030852	LSM7	95	100.000	Mandrillus_leucophaeus
ENSFDAG00000007661	LSM7	100	94.792	ENSMAMG00000005410	lsm7	93	94.792	Mastacembelus_armatus
ENSFDAG00000007661	LSM7	100	94.792	ENSMZEG00005028055	lsm7	93	94.792	Maylandia_zebra
ENSFDAG00000007661	LSM7	100	97.917	ENSMGAG00000000750	LSM7	83	97.917	Meleagris_gallopavo
ENSFDAG00000007661	LSM7	100	98.958	ENSMAUG00000009276	Lsm7	93	98.958	Mesocricetus_auratus
ENSFDAG00000007661	LSM7	100	100.000	ENSMICG00000009988	-	93	100.000	Microcebus_murinus
ENSFDAG00000007661	LSM7	100	100.000	ENSMICG00000028619	-	93	100.000	Microcebus_murinus
ENSFDAG00000007661	LSM7	100	98.958	ENSMOCG00000016925	Lsm7	93	98.958	Microtus_ochrogaster
ENSFDAG00000007661	LSM7	100	94.792	ENSMMOG00000019645	lsm7	91	94.792	Mola_mola
ENSFDAG00000007661	LSM7	100	98.958	ENSMODG00000004722	LSM7	93	98.958	Monodelphis_domestica
ENSFDAG00000007661	LSM7	100	94.792	ENSMALG00000014511	lsm7	74	94.792	Monopterus_albus
ENSFDAG00000007661	LSM7	100	96.875	MGP_CAROLIEiJ_G0015607	Lsm7	93	96.875	Mus_caroli
ENSFDAG00000007661	LSM7	100	96.875	ENSMUSG00000035215	Lsm7	93	96.875	Mus_musculus
ENSFDAG00000007661	LSM7	100	96.875	MGP_PahariEiJ_G0031020	Lsm7	93	96.875	Mus_pahari
ENSFDAG00000007661	LSM7	100	96.875	MGP_SPRETEiJ_G0016425	Lsm7	93	96.875	Mus_spretus
ENSFDAG00000007661	LSM7	100	98.958	ENSMLUG00000013097	-	93	98.958	Myotis_lucifugus
ENSFDAG00000007661	LSM7	100	92.708	ENSMLUG00000024002	-	89	92.708	Myotis_lucifugus
ENSFDAG00000007661	LSM7	100	97.917	ENSNGAG00000021637	Lsm7	93	97.917	Nannospalax_galili
ENSFDAG00000007661	LSM7	98	94.681	ENSNBRG00000001237	-	77	94.792	Neolamprologus_brichardi
ENSFDAG00000007661	LSM7	100	94.792	ENSNBRG00000015770	lsm7	83	94.792	Neolamprologus_brichardi
ENSFDAG00000007661	LSM7	100	100.000	ENSNLEG00000002265	LSM7	93	100.000	Nomascus_leucogenys
ENSFDAG00000007661	LSM7	100	78.125	ENSODEG00000008190	-	93	78.125	Octodon_degus
ENSFDAG00000007661	LSM7	100	92.708	ENSODEG00000018769	-	93	92.708	Octodon_degus
ENSFDAG00000007661	LSM7	100	100.000	ENSODEG00000013590	-	93	100.000	Octodon_degus
ENSFDAG00000007661	LSM7	100	94.792	ENSONIG00000001801	lsm7	83	94.792	Oreochromis_niloticus
ENSFDAG00000007661	LSM7	100	94.792	ENSORLG00000023951	lsm7	93	94.792	Oryzias_latipes
ENSFDAG00000007661	LSM7	100	94.792	ENSORLG00020022226	lsm7	93	94.792	Oryzias_latipes_hni
ENSFDAG00000007661	LSM7	100	94.792	ENSORLG00015020044	lsm7	89	94.792	Oryzias_latipes_hsok
ENSFDAG00000007661	LSM7	100	94.792	ENSOMEG00000012806	lsm7	93	94.792	Oryzias_melastigma
ENSFDAG00000007661	LSM7	100	97.917	ENSOGAG00000000144	-	94	97.917	Otolemur_garnettii
ENSFDAG00000007661	LSM7	100	88.542	ENSOGAG00000024373	-	94	88.542	Otolemur_garnettii
ENSFDAG00000007661	LSM7	100	100.000	ENSOARG00000014013	LSM7	93	100.000	Ovis_aries
ENSFDAG00000007661	LSM7	100	100.000	ENSPPAG00000026500	LSM7	93	100.000	Pan_paniscus
ENSFDAG00000007661	LSM7	100	98.958	ENSPPRG00000008624	LSM7	93	98.958	Panthera_pardus
ENSFDAG00000007661	LSM7	100	98.958	ENSPTIG00000016252	LSM7	93	98.958	Panthera_tigris_altaica
ENSFDAG00000007661	LSM7	100	100.000	ENSPTRG00000010233	LSM7	93	100.000	Pan_troglodytes
ENSFDAG00000007661	LSM7	100	100.000	ENSPANG00000020668	LSM7	93	100.000	Papio_anubis
ENSFDAG00000007661	LSM7	100	96.875	ENSPKIG00000011325	lsm7	93	96.875	Paramormyrops_kingsleyae
ENSFDAG00000007661	LSM7	100	97.917	ENSPSIG00000017149	LSM7	84	97.917	Pelodiscus_sinensis
ENSFDAG00000007661	LSM7	100	94.792	ENSPMGG00000006498	lsm7	93	94.792	Periophthalmus_magnuspinnatus
ENSFDAG00000007661	LSM7	100	98.958	ENSPCIG00000030454	LSM7	94	98.958	Phascolarctos_cinereus
ENSFDAG00000007661	LSM7	100	94.792	ENSPFOG00000012467	lsm7	85	94.792	Poecilia_formosa
ENSFDAG00000007661	LSM7	100	94.792	ENSPLAG00000000252	lsm7	89	94.792	Poecilia_latipinna
ENSFDAG00000007661	LSM7	100	94.792	ENSPMEG00000000587	lsm7	89	94.792	Poecilia_mexicana
ENSFDAG00000007661	LSM7	76	74.324	ENSPREG00000016718	lsm7	59	74.324	Poecilia_reticulata
ENSFDAG00000007661	LSM7	76	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSFDAG00000007661	LSM7	100	100.000	ENSPCOG00000017177	LSM7	94	100.000	Propithecus_coquereli
ENSFDAG00000007661	LSM7	100	94.792	ENSPNYG00000006938	lsm7	93	94.792	Pundamilia_nyererei
ENSFDAG00000007661	LSM7	100	94.792	ENSPNAG00000010141	lsm7	94	94.792	Pygocentrus_nattereri
ENSFDAG00000007661	LSM7	100	97.917	ENSRNOG00000019552	Lsm7	93	97.917	Rattus_norvegicus
ENSFDAG00000007661	LSM7	100	100.000	ENSRBIG00000035978	LSM7	93	100.000	Rhinopithecus_bieti
ENSFDAG00000007661	LSM7	100	100.000	ENSRROG00000034044	LSM7	93	100.000	Rhinopithecus_roxellana
ENSFDAG00000007661	LSM7	90	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSFDAG00000007661	LSM7	100	100.000	ENSSBOG00000034899	LSM7	93	100.000	Saimiri_boliviensis_boliviensis
ENSFDAG00000007661	LSM7	100	94.792	ENSSFOG00015006728	lsm7	93	94.792	Scleropages_formosus
ENSFDAG00000007661	LSM7	100	94.792	ENSSMAG00000004195	lsm7	88	94.792	Scophthalmus_maximus
ENSFDAG00000007661	LSM7	100	94.792	ENSSDUG00000001863	lsm7	93	94.792	Seriola_dumerili
ENSFDAG00000007661	LSM7	100	94.792	ENSSLDG00000016339	lsm7	93	94.792	Seriola_lalandi_dorsalis
ENSFDAG00000007661	LSM7	100	94.792	ENSSPAG00000015221	lsm7	93	94.792	Stegastes_partitus
ENSFDAG00000007661	LSM7	100	100.000	ENSSSCG00000013463	LSM7	94	100.000	Sus_scrofa
ENSFDAG00000007661	LSM7	100	96.875	ENSTGUG00000000067	LSM7	95	96.875	Taeniopygia_guttata
ENSFDAG00000007661	LSM7	100	94.792	ENSTRUG00000022913	lsm7	93	94.792	Takifugu_rubripes
ENSFDAG00000007661	LSM7	100	94.792	ENSTNIG00000015525	lsm7	93	94.792	Tetraodon_nigroviridis
ENSFDAG00000007661	LSM7	73	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSFDAG00000007661	LSM7	100	98.958	ENSUAMG00000000912	LSM7	80	98.958	Ursus_americanus
ENSFDAG00000007661	LSM7	100	98.958	ENSUMAG00000006556	LSM7	75	98.958	Ursus_maritimus
ENSFDAG00000007661	LSM7	74	98.592	ENSVVUG00000002640	LSM7	65	98.592	Vulpes_vulpes
ENSFDAG00000007661	LSM7	100	94.792	ENSXETG00000022166	lsm7	95	94.792	Xenopus_tropicalis
ENSFDAG00000007661	LSM7	100	95.833	ENSXCOG00000002572	lsm7	94	95.833	Xiphophorus_couchianus
ENSFDAG00000007661	LSM7	100	95.833	ENSXMAG00000018630	lsm7	93	95.833	Xiphophorus_maculatus