EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFDAG00000008140 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Minus strand
Length: 38294 bases
Position: chrKN122666.1:3998823-4037116
Accession: 104869364
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000020851	TruB_N	PF01509.18	6.8e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000027882	TRUB1-201	1488	XM_010634574	ENSFDAP00000020851	244 (aa)	XP_010632876	-

Gene Model

Click here to download ENSFDAG00000008140's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000008140's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000008140	TRUB1	99	86.831	ENSG00000165832	TRUB1	70	86.831	Homo_sapiens
ENSFDAG00000008140	TRUB1	75	66.484	ENSAPOG00000020565	trub1	67	66.120	Acanthochromis_polyacanthus
ENSFDAG00000008140	TRUB1	95	90.086	ENSAMEG00000014931	TRUB1	70	87.755	Ailuropoda_melanoleuca
ENSFDAG00000008140	TRUB1	75	59.563	ENSACIG00000003060	trub1	61	59.563	Amphilophus_citrinellus
ENSFDAG00000008140	TRUB1	75	65.934	ENSAOCG00000017188	trub1	71	63.402	Amphiprion_ocellaris
ENSFDAG00000008140	TRUB1	75	65.574	ENSAPEG00000015209	trub1	67	65.574	Amphiprion_percula
ENSFDAG00000008140	TRUB1	75	68.132	ENSATEG00000023291	trub1	65	68.132	Anabas_testudineus
ENSFDAG00000008140	TRUB1	75	76.087	ENSAPLG00000006808	TRUB1	67	75.401	Anas_platyrhynchos
ENSFDAG00000008140	TRUB1	76	69.355	ENSACAG00000009282	TRUB1	67	69.355	Anolis_carolinensis
ENSFDAG00000008140	TRUB1	95	91.775	ENSANAG00000022870	TRUB1	70	89.344	Aotus_nancymaae
ENSFDAG00000008140	TRUB1	75	65.574	ENSACLG00000000823	trub1	66	65.574	Astatotilapia_calliptera
ENSFDAG00000008140	TRUB1	75	66.667	ENSAMXG00000015845	trub1	61	66.667	Astyanax_mexicanus
ENSFDAG00000008140	TRUB1	97	87.764	ENSBTAG00000012955	TRUB1	68	87.137	Bos_taurus
ENSFDAG00000008140	TRUB1	96	91.064	ENSCJAG00000047815	TRUB1	68	90.295	Callithrix_jacchus
ENSFDAG00000008140	TRUB1	99	87.243	ENSCAFG00000011688	TRUB1	69	87.243	Canis_familiaris
ENSFDAG00000008140	TRUB1	99	87.243	ENSCAFG00020013237	TRUB1	69	87.243	Canis_lupus_dingo
ENSFDAG00000008140	TRUB1	97	86.920	ENSCHIG00000020884	TRUB1	69	86.008	Capra_hircus
ENSFDAG00000008140	TRUB1	99	83.197	ENSTSYG00000000446	TRUB1	70	84.016	Carlito_syrichta
ENSFDAG00000008140	TRUB1	61	95.302	ENSCAPG00000017088	TRUB1	63	95.302	Cavia_aperea
ENSFDAG00000008140	TRUB1	100	79.918	ENSCPOG00000030129	-	85	79.098	Cavia_porcellus
ENSFDAG00000008140	TRUB1	100	85.656	ENSCPOG00000040236	-	100	85.656	Cavia_porcellus
ENSFDAG00000008140	TRUB1	95	90.948	ENSCCAG00000028842	TRUB1	68	89.873	Cebus_capucinus
ENSFDAG00000008140	TRUB1	100	87.347	ENSCATG00000033431	TRUB1	70	87.347	Cercocebus_atys
ENSFDAG00000008140	TRUB1	100	90.574	ENSCLAG00000008664	TRUB1	100	90.574	Chinchilla_lanigera
ENSFDAG00000008140	TRUB1	99	87.654	ENSCSAG00000004891	TRUB1	69	87.654	Chlorocebus_sabaeus
ENSFDAG00000008140	TRUB1	98	78.512	ENSCHOG00000011931	TRUB1	71	78.512	Choloepus_hoffmanni
ENSFDAG00000008140	TRUB1	75	78.804	ENSCPBG00000003051	TRUB1	63	78.804	Chrysemys_picta_bellii
ENSFDAG00000008140	TRUB1	100	87.347	ENSCANG00000029445	TRUB1	70	87.347	Colobus_angolensis_palliatus
ENSFDAG00000008140	TRUB1	72	77.273	ENSCGRG00001010322	-	51	77.083	Cricetulus_griseus_chok1gshd
ENSFDAG00000008140	TRUB1	61	90.000	ENSCGRG00001016772	-	55	76.166	Cricetulus_griseus_chok1gshd
ENSFDAG00000008140	TRUB1	72	91.477	ENSCGRG00000010806	Trub1	59	89.637	Cricetulus_griseus_crigri
ENSFDAG00000008140	TRUB1	80	62.887	ENSCSEG00000011261	trub1	63	62.887	Cynoglossus_semilaevis
ENSFDAG00000008140	TRUB1	75	67.033	ENSCVAG00000008791	trub1	56	67.033	Cyprinodon_variegatus
ENSFDAG00000008140	TRUB1	75	67.213	ENSDARG00000053805	trub1	76	68.627	Danio_rerio
ENSFDAG00000008140	TRUB1	96	85.106	ENSDNOG00000001069	TRUB1	69	83.951	Dasypus_novemcinctus
ENSFDAG00000008140	TRUB1	98	86.667	ENSDORG00000010431	Trub1	68	86.250	Dipodomys_ordii
ENSFDAG00000008140	TRUB1	80	72.864	ENSETEG00000009183	TRUB1	56	74.874	Echinops_telfairi
ENSFDAG00000008140	TRUB1	95	90.086	ENSEASG00005014739	TRUB1	70	87.755	Equus_asinus_asinus
ENSFDAG00000008140	TRUB1	95	90.086	ENSECAG00000007177	TRUB1	70	87.755	Equus_caballus
ENSFDAG00000008140	TRUB1	99	68.273	ENSEEUG00000013993	TRUB1	69	69.076	Erinaceus_europaeus
ENSFDAG00000008140	TRUB1	75	69.399	ENSELUG00000000502	trub1	64	69.399	Esox_lucius
ENSFDAG00000008140	TRUB1	95	88.793	ENSFCAG00000031927	TRUB1	70	86.885	Felis_catus
ENSFDAG00000008140	TRUB1	63	76.471	ENSFALG00000002232	TRUB1	59	76.471	Ficedula_albicollis
ENSFDAG00000008140	TRUB1	75	67.033	ENSFHEG00000004016	trub1	63	67.033	Fundulus_heteroclitus
ENSFDAG00000008140	TRUB1	75	74.457	ENSGALG00000009091	TRUB1	80	74.457	Gallus_gallus
ENSFDAG00000008140	TRUB1	82	60.891	ENSGAFG00000009193	trub1	65	64.674	Gambusia_affinis
ENSFDAG00000008140	TRUB1	54	66.667	ENSGACG00000015387	trub1	65	66.667	Gasterosteus_aculeatus
ENSFDAG00000008140	TRUB1	86	73.810	ENSGAGG00000009758	TRUB1	56	76.531	Gopherus_agassizii
ENSFDAG00000008140	TRUB1	96	89.362	ENSGGOG00000004583	TRUB1	67	89.362	Gorilla_gorilla
ENSFDAG00000008140	TRUB1	80	62.755	ENSHBUG00000016787	trub1	71	62.755	Haplochromis_burtoni
ENSFDAG00000008140	TRUB1	100	92.213	ENSHGLG00000015314	TRUB1	70	92.213	Heterocephalus_glaber_female
ENSFDAG00000008140	TRUB1	100	90.164	ENSHGLG00100009183	TRUB1	100	90.164	Heterocephalus_glaber_male
ENSFDAG00000008140	TRUB1	80	64.103	ENSHCOG00000017877	trub1	71	64.103	Hippocampus_comes
ENSFDAG00000008140	TRUB1	75	69.399	ENSIPUG00000017559	trub1	64	69.399	Ictalurus_punctatus
ENSFDAG00000008140	TRUB1	81	94.924	ENSSTOG00000003641	TRUB1	69	83.673	Ictidomys_tridecemlineatus
ENSFDAG00000008140	TRUB1	80	94.359	ENSJJAG00000011800	Trub1	68	80.833	Jaculus_jaculus
ENSFDAG00000008140	TRUB1	75	66.667	ENSKMAG00000006232	trub1	66	66.667	Kryptolebias_marmoratus
ENSFDAG00000008140	TRUB1	75	67.213	ENSLBEG00000026722	trub1	64	67.213	Labrus_bergylta
ENSFDAG00000008140	TRUB1	77	75.789	ENSLACG00000014885	TRUB1	63	75.789	Latimeria_chalumnae
ENSFDAG00000008140	TRUB1	80	69.744	ENSLOCG00000012979	trub1	66	69.744	Lepisosteus_oculatus
ENSFDAG00000008140	TRUB1	99	80.083	ENSLAFG00000015452	TRUB1	67	80.083	Loxodonta_africana
ENSFDAG00000008140	TRUB1	100	87.347	ENSMFAG00000031767	TRUB1	70	87.347	Macaca_fascicularis
ENSFDAG00000008140	TRUB1	100	87.347	ENSMMUG00000001902	TRUB1	70	87.347	Macaca_mulatta
ENSFDAG00000008140	TRUB1	100	81.633	ENSMNEG00000044646	TRUB1	69	81.633	Macaca_nemestrina
ENSFDAG00000008140	TRUB1	100	86.939	ENSMLEG00000042655	TRUB1	70	86.939	Mandrillus_leucophaeus
ENSFDAG00000008140	TRUB1	75	65.574	ENSMZEG00005024095	trub1	66	65.574	Maylandia_zebra
ENSFDAG00000008140	TRUB1	75	74.457	ENSMGAG00000011135	TRUB1	63	74.457	Meleagris_gallopavo
ENSFDAG00000008140	TRUB1	72	88.068	ENSMAUG00000011101	Trub1	57	87.245	Mesocricetus_auratus
ENSFDAG00000008140	TRUB1	100	88.115	ENSMICG00000016324	TRUB1	70	88.115	Microcebus_murinus
ENSFDAG00000008140	TRUB1	91	83.710	ENSMOCG00000017759	Trub1	63	81.696	Microtus_ochrogaster
ENSFDAG00000008140	TRUB1	75	89.011	ENSMODG00000009676	TRUB1	52	86.772	Monodelphis_domestica
ENSFDAG00000008140	TRUB1	81	90.355	MGP_CAROLIEiJ_G0023100	Trub1	94	79.508	Mus_caroli
ENSFDAG00000008140	TRUB1	81	89.340	ENSMUSG00000025086	Trub1	80	89.340	Mus_musculus
ENSFDAG00000008140	TRUB1	81	90.863	MGP_PahariEiJ_G0014588	Trub1	58	90.863	Mus_pahari
ENSFDAG00000008140	TRUB1	81	89.340	MGP_SPRETEiJ_G0024021	Trub1	80	89.340	Mus_spretus
ENSFDAG00000008140	TRUB1	95	90.086	ENSMPUG00000003556	TRUB1	70	87.755	Mustela_putorius_furo
ENSFDAG00000008140	TRUB1	94	87.391	ENSMLUG00000017686	TRUB1	69	84.146	Myotis_lucifugus
ENSFDAG00000008140	TRUB1	99	85.477	ENSNGAG00000018682	Trub1	69	85.477	Nannospalax_galili
ENSFDAG00000008140	TRUB1	75	65.574	ENSNBRG00000023393	trub1	65	65.574	Neolamprologus_brichardi
ENSFDAG00000008140	TRUB1	95	88.793	ENSNLEG00000016345	TRUB1	70	86.420	Nomascus_leucogenys
ENSFDAG00000008140	TRUB1	75	89.011	ENSMEUG00000006603	TRUB1	70	86.772	Notamacropus_eugenii
ENSFDAG00000008140	TRUB1	81	87.310	ENSOPRG00000009371	TRUB1	57	87.310	Ochotona_princeps
ENSFDAG00000008140	TRUB1	100	84.016	ENSODEG00000010854	TRUB1	70	84.016	Octodon_degus
ENSFDAG00000008140	TRUB1	75	65.027	ENSONIG00000007249	trub1	67	65.027	Oreochromis_niloticus
ENSFDAG00000008140	TRUB1	76	80.645	ENSOANG00000001556	TRUB1	61	80.645	Ornithorhynchus_anatinus
ENSFDAG00000008140	TRUB1	93	86.784	ENSOCUG00000009456	TRUB1	66	86.784	Oryctolagus_cuniculus
ENSFDAG00000008140	TRUB1	75	68.132	ENSORLG00000029719	trub1	65	68.132	Oryzias_latipes
ENSFDAG00000008140	TRUB1	75	67.582	ENSORLG00020016767	trub1	64	67.582	Oryzias_latipes_hni
ENSFDAG00000008140	TRUB1	75	67.582	ENSORLG00015014728	trub1	65	67.582	Oryzias_latipes_hsok
ENSFDAG00000008140	TRUB1	84	64.878	ENSOMEG00000014556	trub1	64	69.231	Oryzias_melastigma
ENSFDAG00000008140	TRUB1	99	90.123	ENSOGAG00000015895	TRUB1	69	90.123	Otolemur_garnettii
ENSFDAG00000008140	TRUB1	78	91.837	ENSOARG00000015591	TRUB1	69	80.242	Ovis_aries
ENSFDAG00000008140	TRUB1	99	87.243	ENSPPAG00000043645	TRUB1	70	87.243	Pan_paniscus
ENSFDAG00000008140	TRUB1	95	87.931	ENSPPRG00000007096	TRUB1	70	86.066	Panthera_pardus
ENSFDAG00000008140	TRUB1	95	88.362	ENSPTIG00000006378	TRUB1	70	86.475	Panthera_tigris_altaica
ENSFDAG00000008140	TRUB1	99	87.243	ENSPTRG00000002964	TRUB1	70	87.243	Pan_troglodytes
ENSFDAG00000008140	TRUB1	100	86.939	ENSPANG00000020712	TRUB1	70	86.939	Papio_anubis
ENSFDAG00000008140	TRUB1	75	77.174	ENSPSIG00000012877	TRUB1	63	77.174	Pelodiscus_sinensis
ENSFDAG00000008140	TRUB1	75	64.481	ENSPMGG00000000075	trub1	66	64.481	Periophthalmus_magnuspinnatus
ENSFDAG00000008140	TRUB1	81	87.374	ENSPEMG00000011156	Trub1	69	77.459	Peromyscus_maniculatus_bairdii
ENSFDAG00000008140	TRUB1	75	89.011	ENSPCIG00000009729	TRUB1	54	87.234	Phascolarctos_cinereus
ENSFDAG00000008140	TRUB1	75	66.120	ENSPFOG00000009950	trub1	67	66.120	Poecilia_formosa
ENSFDAG00000008140	TRUB1	75	66.120	ENSPLAG00000013855	trub1	64	66.120	Poecilia_latipinna
ENSFDAG00000008140	TRUB1	75	66.120	ENSPMEG00000009064	trub1	66	66.120	Poecilia_mexicana
ENSFDAG00000008140	TRUB1	82	62.687	ENSPREG00000003343	trub1	66	66.667	Poecilia_reticulata
ENSFDAG00000008140	TRUB1	95	89.224	ENSPPYG00000002676	TRUB1	70	86.831	Pongo_abelii
ENSFDAG00000008140	TRUB1	99	79.835	ENSPCAG00000008427	TRUB1	69	79.835	Procavia_capensis
ENSFDAG00000008140	TRUB1	100	80.738	ENSPCOG00000024360	TRUB1	68	80.738	Propithecus_coquereli
ENSFDAG00000008140	TRUB1	100	87.295	ENSPVAG00000007575	TRUB1	93	87.295	Pteropus_vampyrus
ENSFDAG00000008140	TRUB1	75	65.574	ENSPNYG00000018614	trub1	66	65.574	Pundamilia_nyererei
ENSFDAG00000008140	TRUB1	75	56.593	ENSPNAG00000006881	trub1	55	56.593	Pygocentrus_nattereri
ENSFDAG00000008140	TRUB1	81	90.355	ENSRNOG00000017321	Trub1	58	90.355	Rattus_norvegicus
ENSFDAG00000008140	TRUB1	97	75.949	ENSRBIG00000033423	TRUB1	67	75.949	Rhinopithecus_bieti
ENSFDAG00000008140	TRUB1	100	86.939	ENSRROG00000033902	TRUB1	70	86.939	Rhinopithecus_roxellana
ENSFDAG00000008140	TRUB1	95	91.810	ENSSBOG00000024237	TRUB1	68	89.958	Saimiri_boliviensis_boliviensis
ENSFDAG00000008140	TRUB1	61	88.000	ENSSHAG00000009346	TRUB1	50	88.000	Sarcophilus_harrisii
ENSFDAG00000008140	TRUB1	84	61.951	ENSSFOG00015022124	trub1	62	66.667	Scleropages_formosus
ENSFDAG00000008140	TRUB1	75	67.213	ENSSMAG00000001020	trub1	65	67.213	Scophthalmus_maximus
ENSFDAG00000008140	TRUB1	73	67.797	ENSSDUG00000016414	trub1	66	67.760	Seriola_dumerili
ENSFDAG00000008140	TRUB1	73	68.362	ENSSLDG00000015486	trub1	66	68.306	Seriola_lalandi_dorsalis
ENSFDAG00000008140	TRUB1	78	76.440	ENSSPUG00000001642	TRUB1	66	76.440	Sphenodon_punctatus
ENSFDAG00000008140	TRUB1	75	66.667	ENSSPAG00000001217	trub1	66	66.667	Stegastes_partitus
ENSFDAG00000008140	TRUB1	100	83.673	ENSSSCG00000010653	TRUB1	71	83.673	Sus_scrofa
ENSFDAG00000008140	TRUB1	75	75.275	ENSTGUG00000010971	TRUB1	65	75.000	Taeniopygia_guttata
ENSFDAG00000008140	TRUB1	95	87.069	ENSTTRG00000005767	TRUB1	93	84.082	Tursiops_truncatus
ENSFDAG00000008140	TRUB1	95	91.379	ENSUAMG00000024876	TRUB1	70	88.980	Ursus_americanus
ENSFDAG00000008140	TRUB1	78	96.859	ENSUMAG00000002411	TRUB1	91	83.673	Ursus_maritimus
ENSFDAG00000008140	TRUB1	100	86.939	ENSVPAG00000005507	TRUB1	70	86.939	Vicugna_pacos
ENSFDAG00000008140	TRUB1	99	84.774	ENSVVUG00000010085	TRUB1	58	85.597	Vulpes_vulpes
ENSFDAG00000008140	TRUB1	75	69.565	ENSXETG00000023828	trub1	66	69.565	Xenopus_tropicalis
ENSFDAG00000008140	TRUB1	75	65.574	ENSXCOG00000017847	trub1	65	65.574	Xiphophorus_couchianus
ENSFDAG00000008140	TRUB1	75	66.120	ENSXMAG00000014701	trub1	66	66.120	Xiphophorus_maculatus