EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFDAG00000009833 (Gene tree)
Gene ID: 104870398
Gene Symbol: SF1
Alias: ZCCHC25|ZFM1|ZNF162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 12732 bases
Position: chrKN122776.1:6858109-6870840
Accession: 104870398
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000018450	KH_1	PF00013.29	1.9e-07	1	1
ENSFDAP00000018442	KH_1	PF00013.29	2.2e-07	1	1
ENSFDAP00000018450	zf-CCHC	PF00098.23	0.00011	1	1
ENSFDAP00000018442	zf-CCHC	PF00098.23	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000013588	SF1-202	1890	-	ENSFDAP00000018442	629 (aa)	-	-
ENSFDAT00000013572	SF1-201	2452	XM_010636043	ENSFDAP00000018450	560 (aa)	XP_010634345	-

Gene Model

Click here to download ENSFDAG00000009833's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000009833's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000009833	SF1	65	82.353	ENSAPOG00000012341	sf1	58	77.966	Acanthochromis_polyacanthus
ENSFDAG00000009833	SF1	99	90.938	ENSAMEG00000017828	SF1	99	88.837	Ailuropoda_melanoleuca
ENSFDAG00000009833	SF1	65	83.651	ENSACIG00000016514	sf1	61	78.780	Amphilophus_citrinellus
ENSFDAG00000009833	SF1	65	81.818	ENSAOCG00000010934	sf1	58	76.998	Amphiprion_ocellaris
ENSFDAG00000009833	SF1	65	81.818	ENSAPEG00000009498	sf1	58	76.998	Amphiprion_percula
ENSFDAG00000009833	SF1	65	82.086	ENSATEG00000001894	sf1	59	77.724	Anabas_testudineus
ENSFDAG00000009833	SF1	85	84.854	ENSANAG00000022607	-	89	88.251	Aotus_nancymaae
ENSFDAG00000009833	SF1	100	98.214	ENSANAG00000026664	-	98	98.214	Aotus_nancymaae
ENSFDAG00000009833	SF1	65	84.282	ENSACLG00000007633	sf1	63	78.520	Astatotilapia_calliptera
ENSFDAG00000009833	SF1	66	86.096	ENSAMXG00000003630	sf1	50	79.218	Astyanax_mexicanus
ENSFDAG00000009833	SF1	89	95.652	ENSBTAG00000001035	SF1	90	95.652	Bos_taurus
ENSFDAG00000009833	SF1	99	92.006	ENSCJAG00000002780	SF1	98	91.250	Callithrix_jacchus
ENSFDAG00000009833	SF1	99	92.006	ENSCAFG00000014239	SF1	98	91.250	Canis_familiaris
ENSFDAG00000009833	SF1	99	92.006	ENSCAFG00020014381	SF1	98	91.250	Canis_lupus_dingo
ENSFDAG00000009833	SF1	89	95.652	ENSCHIG00000025867	SF1	94	96.705	Capra_hircus
ENSFDAG00000009833	SF1	54	99.281	ENSTSYG00000033618	SF1	82	99.281	Carlito_syrichta
ENSFDAG00000009833	SF1	100	98.393	ENSCAPG00000010762	SF1	100	98.393	Cavia_aperea
ENSFDAG00000009833	SF1	99	95.419	ENSCPOG00000012290	SF1	99	95.419	Cavia_porcellus
ENSFDAG00000009833	SF1	99	92.006	ENSCCAG00000037881	SF1	93	100.000	Cebus_capucinus
ENSFDAG00000009833	SF1	73	86.978	ENSCCAG00000023781	-	89	80.124	Cebus_capucinus
ENSFDAG00000009833	SF1	99	94.127	ENSCATG00000011564	SF1	98	94.127	Cercocebus_atys
ENSFDAG00000009833	SF1	79	99.091	ENSCSAG00000007258	SF1	94	96.705	Chlorocebus_sabaeus
ENSFDAG00000009833	SF1	74	93.689	ENSCHOG00000006008	SF1	79	93.780	Choloepus_hoffmanni
ENSFDAG00000009833	SF1	76	89.835	ENSCPBG00000023763	SF1	52	89.926	Chrysemys_picta_bellii
ENSFDAG00000009833	SF1	65	59.946	ENSCING00000005564	-	74	60.372	Ciona_intestinalis
ENSFDAG00000009833	SF1	79	55.042	ENSCSAVG00000009055	-	88	55.014	Ciona_savignyi
ENSFDAG00000009833	SF1	99	92.006	ENSCANG00000042201	SF1	98	91.250	Colobus_angolensis_palliatus
ENSFDAG00000009833	SF1	100	97.500	ENSCGRG00001003677	Sf1	98	97.500	Cricetulus_griseus_chok1gshd
ENSFDAG00000009833	SF1	100	97.500	ENSCGRG00000001708	Sf1	100	97.500	Cricetulus_griseus_crigri
ENSFDAG00000009833	SF1	70	78.554	ENSCSEG00000014375	sf1	57	76.513	Cynoglossus_semilaevis
ENSFDAG00000009833	SF1	66	84.783	ENSCVAG00000001670	sf1	63	79.361	Cyprinodon_variegatus
ENSFDAG00000009833	SF1	69	80.867	ENSDARG00000008188	sf1	70	78.230	Danio_rerio
ENSFDAG00000009833	SF1	79	98.409	ENSDNOG00000001282	SF1	94	96.318	Dasypus_novemcinctus
ENSFDAG00000009833	SF1	99	94.696	ENSDORG00000016334	Sf1	99	94.696	Dipodomys_ordii
ENSFDAG00000009833	SF1	89	88.522	ENSETEG00000012830	SF1	80	88.522	Echinops_telfairi
ENSFDAG00000009833	SF1	79	98.636	ENSEASG00005018272	SF1	94	96.318	Equus_asinus_asinus
ENSFDAG00000009833	SF1	79	98.864	ENSECAG00000024544	SF1	94	96.512	Equus_caballus
ENSFDAG00000009833	SF1	70	99.237	ENSEEUG00000001058	SF1	100	99.237	Erinaceus_europaeus
ENSFDAG00000009833	SF1	65	81.720	ENSELUG00000013225	sf1	53	78.450	Esox_lucius
ENSFDAG00000009833	SF1	99	92.006	ENSFCAG00000012231	SF1	98	91.250	Felis_catus
ENSFDAG00000009833	SF1	66	81.481	ENSFHEG00000022656	sf1	59	77.197	Fundulus_heteroclitus
ENSFDAG00000009833	SF1	56	88.308	ENSGMOG00000007469	sf1	59	88.308	Gadus_morhua
ENSFDAG00000009833	SF1	66	84.182	ENSGAFG00000019284	sf1	78	79.327	Gambusia_affinis
ENSFDAG00000009833	SF1	66	80.526	ENSGACG00000000826	sf1	66	76.355	Gasterosteus_aculeatus
ENSFDAG00000009833	SF1	76	89.598	ENSGAGG00000021691	SF1	57	89.681	Gopherus_agassizii
ENSFDAG00000009833	SF1	65	83.200	ENSHBUG00000011598	sf1	59	78.657	Haplochromis_burtoni
ENSFDAG00000009833	SF1	100	99.286	ENSHGLG00000009541	SF1	98	99.286	Heterocephalus_glaber_female
ENSFDAG00000009833	SF1	76	87.016	ENSHGLG00100008255	-	83	86.288	Heterocephalus_glaber_male
ENSFDAG00000009833	SF1	100	99.286	ENSHGLG00100013879	-	100	99.286	Heterocephalus_glaber_male
ENSFDAG00000009833	SF1	71	88.972	ENSHGLG00100008076	-	76	86.162	Heterocephalus_glaber_male
ENSFDAG00000009833	SF1	66	81.365	ENSHCOG00000011388	sf1	58	76.755	Hippocampus_comes
ENSFDAG00000009833	SF1	99	91.693	ENSSTOG00000009790	-	100	90.938	Ictidomys_tridecemlineatus
ENSFDAG00000009833	SF1	100	82.709	ENSSTOG00000024353	-	98	83.601	Ictidomys_tridecemlineatus
ENSFDAG00000009833	SF1	99	91.693	ENSJJAG00000011788	Sf1	98	90.938	Jaculus_jaculus
ENSFDAG00000009833	SF1	66	83.862	ENSKMAG00000005854	sf1	62	78.043	Kryptolebias_marmoratus
ENSFDAG00000009833	SF1	66	82.493	ENSLBEG00000019836	sf1	63	78.208	Labrus_bergylta
ENSFDAG00000009833	SF1	73	78.986	ENSLACG00000018493	SF1	73	79.024	Latimeria_chalumnae
ENSFDAG00000009833	SF1	66	84.840	ENSLOCG00000002130	sf1	58	79.753	Lepisosteus_oculatus
ENSFDAG00000009833	SF1	99	94.081	ENSLAFG00000007201	SF1	99	94.081	Loxodonta_africana
ENSFDAG00000009833	SF1	99	94.720	ENSMFAG00000033122	SF1	98	94.720	Macaca_fascicularis
ENSFDAG00000009833	SF1	99	92.006	ENSMMUG00000022606	SF1	99	99.506	Macaca_mulatta
ENSFDAG00000009833	SF1	99	94.127	ENSMNEG00000037901	SF1	98	94.127	Macaca_nemestrina
ENSFDAG00000009833	SF1	99	94.127	ENSMLEG00000040706	SF1	99	94.127	Mandrillus_leucophaeus
ENSFDAG00000009833	SF1	65	82.888	ENSMAMG00000001780	sf1	58	77.966	Mastacembelus_armatus
ENSFDAG00000009833	SF1	65	82.933	ENSMZEG00005009196	sf1	59	78.417	Maylandia_zebra
ENSFDAG00000009833	SF1	100	97.321	ENSMAUG00000014064	Sf1	98	97.321	Mesocricetus_auratus
ENSFDAG00000009833	SF1	99	90.282	ENSMICG00000001202	SF1	93	99.748	Microcebus_murinus
ENSFDAG00000009833	SF1	100	97.500	ENSMOCG00000022038	Sf1	98	97.500	Microtus_ochrogaster
ENSFDAG00000009833	SF1	65	82.016	ENSMMOG00000020474	sf1	59	76.601	Mola_mola
ENSFDAG00000009833	SF1	76	97.882	ENSMODG00000029407	SF1	92	97.882	Monodelphis_domestica
ENSFDAG00000009833	SF1	65	83.562	ENSMALG00000020521	sf1	67	76.812	Monopterus_albus
ENSFDAG00000009833	SF1	100	97.679	MGP_CAROLIEiJ_G0022607	Sf1	100	99.625	Mus_caroli
ENSFDAG00000009833	SF1	100	97.679	ENSMUSG00000024949	Sf1	100	99.625	Mus_musculus
ENSFDAG00000009833	SF1	100	97.679	MGP_PahariEiJ_G0014101	Sf1	100	99.625	Mus_pahari
ENSFDAG00000009833	SF1	100	97.679	MGP_SPRETEiJ_G0023518	Sf1	100	99.625	Mus_spretus
ENSFDAG00000009833	SF1	89	95.478	ENSMPUG00000012684	SF1	90	95.478	Mustela_putorius_furo
ENSFDAG00000009833	SF1	89	95.304	ENSMLUG00000015217	-	90	95.304	Myotis_lucifugus
ENSFDAG00000009833	SF1	79	93.864	ENSMLUG00000029800	-	70	95.577	Myotis_lucifugus
ENSFDAG00000009833	SF1	100	98.750	ENSNGAG00000005550	Sf1	98	98.750	Nannospalax_galili
ENSFDAG00000009833	SF1	65	84.282	ENSNBRG00000017606	sf1	60	79.562	Neolamprologus_brichardi
ENSFDAG00000009833	SF1	99	93.925	ENSNLEG00000005236	-	98	93.925	Nomascus_leucogenys
ENSFDAG00000009833	SF1	78	97.926	ENSMEUG00000013424	SF1	96	95.882	Notamacropus_eugenii
ENSFDAG00000009833	SF1	74	96.406	ENSOPRG00000005008	SF1	96	96.406	Ochotona_princeps
ENSFDAG00000009833	SF1	99	87.658	ENSODEG00000006102	-	98	87.658	Octodon_degus
ENSFDAG00000009833	SF1	65	83.200	ENSONIG00000015728	sf1	59	78.657	Oreochromis_niloticus
ENSFDAG00000009833	SF1	64	87.709	ENSOANG00000002909	SF1	84	86.257	Ornithorhynchus_anatinus
ENSFDAG00000009833	SF1	99	84.953	ENSOCUG00000026486	SF1	99	91.094	Oryctolagus_cuniculus
ENSFDAG00000009833	SF1	68	80.879	ENSORLG00000011853	sf1	58	76.998	Oryzias_latipes
ENSFDAG00000009833	SF1	68	80.879	ENSORLG00020011834	sf1	58	76.998	Oryzias_latipes_hni
ENSFDAG00000009833	SF1	66	80.688	ENSORLG00015012855	sf1	58	76.755	Oryzias_latipes_hsok
ENSFDAG00000009833	SF1	66	82.011	ENSOMEG00000005210	sf1	59	77.966	Oryzias_melastigma
ENSFDAG00000009833	SF1	99	90.439	ENSOGAG00000016196	SF1	98	92.006	Otolemur_garnettii
ENSFDAG00000009833	SF1	79	99.091	ENSOARG00000009166	SF1	95	91.912	Ovis_aries
ENSFDAG00000009833	SF1	99	91.888	ENSPPAG00000002799	-	95	100.000	Pan_paniscus
ENSFDAG00000009833	SF1	99	92.006	ENSPPRG00000013566	SF1	98	91.250	Panthera_pardus
ENSFDAG00000009833	SF1	100	90.714	ENSPTIG00000016141	SF1	98	90.357	Panthera_tigris_altaica
ENSFDAG00000009833	SF1	99	92.006	ENSPTRG00000003846	SF1	97	100.000	Pan_troglodytes
ENSFDAG00000009833	SF1	99	94.127	ENSPANG00000020754	SF1	98	94.127	Papio_anubis
ENSFDAG00000009833	SF1	60	78.824	ENSPKIG00000012116	sf1	88	74.499	Paramormyrops_kingsleyae
ENSFDAG00000009833	SF1	57	87.812	ENSPSIG00000003610	SF1	59	87.829	Pelodiscus_sinensis
ENSFDAG00000009833	SF1	100	98.214	ENSPEMG00000010463	Sf1	98	98.214	Peromyscus_maniculatus_bairdii
ENSFDAG00000009833	SF1	60	72.321	ENSPMAG00000008272	sf1	53	66.757	Petromyzon_marinus
ENSFDAG00000009833	SF1	99	89.639	ENSPCIG00000018173	SF1	91	94.609	Phascolarctos_cinereus
ENSFDAG00000009833	SF1	66	85.326	ENSPFOG00000013683	sf1	66	80.637	Poecilia_formosa
ENSFDAG00000009833	SF1	66	83.820	ENSPLAG00000018076	sf1	61	79.137	Poecilia_latipinna
ENSFDAG00000009833	SF1	66	83.820	ENSPMEG00000005726	sf1	62	79.376	Poecilia_mexicana
ENSFDAG00000009833	SF1	66	83.289	ENSPREG00000004155	sf1	59	78.657	Poecilia_reticulata
ENSFDAG00000009833	SF1	99	91.850	ENSPPYG00000003098	-	98	96.525	Pongo_abelii
ENSFDAG00000009833	SF1	79	98.409	ENSPCAG00000013631	SF1	77	96.124	Procavia_capensis
ENSFDAG00000009833	SF1	99	90.439	ENSPCOG00000027546	SF1	93	99.748	Propithecus_coquereli
ENSFDAG00000009833	SF1	79	98.409	ENSPVAG00000016938	SF1	78	96.318	Pteropus_vampyrus
ENSFDAG00000009833	SF1	65	82.933	ENSPNYG00000004673	sf1	59	78.417	Pundamilia_nyererei
ENSFDAG00000009833	SF1	66	85.867	ENSPNAG00000013072	sf1	59	80.000	Pygocentrus_nattereri
ENSFDAG00000009833	SF1	89	94.957	ENSRNOG00000021085	Sf1	89	95.991	Rattus_norvegicus
ENSFDAG00000009833	SF1	100	90.714	ENSRBIG00000042818	SF1	89	99.730	Rhinopithecus_bieti
ENSFDAG00000009833	SF1	100	98.393	ENSRROG00000045655	SF1	99	98.393	Rhinopithecus_roxellana
ENSFDAG00000009833	SF1	52	43.421	YLR116W	MSL5	61	43.182	Saccharomyces_cerevisiae
ENSFDAG00000009833	SF1	93	78.695	ENSSBOG00000022267	-	97	81.235	Saimiri_boliviensis_boliviensis
ENSFDAG00000009833	SF1	71	93.500	ENSSHAG00000006841	SF1	73	94.750	Sarcophilus_harrisii
ENSFDAG00000009833	SF1	70	80.653	ENSSFOG00015021978	sf1	55	77.240	Scleropages_formosus
ENSFDAG00000009833	SF1	72	76.247	ENSSMAG00000007549	sf1	65	74.371	Scophthalmus_maximus
ENSFDAG00000009833	SF1	65	81.283	ENSSDUG00000003903	sf1	61	77.240	Seriola_dumerili
ENSFDAG00000009833	SF1	65	81.283	ENSSLDG00000013075	sf1	59	77.240	Seriola_lalandi_dorsalis
ENSFDAG00000009833	SF1	78	95.392	ENSSARG00000008180	SF1	84	95.392	Sorex_araneus
ENSFDAG00000009833	SF1	73	85.981	ENSSPUG00000012907	SF1	68	85.922	Sphenodon_punctatus
ENSFDAG00000009833	SF1	65	81.818	ENSSPAG00000019060	sf1	58	76.998	Stegastes_partitus
ENSFDAG00000009833	SF1	99	91.693	ENSSSCG00000013021	SF1	94	96.512	Sus_scrofa
ENSFDAG00000009833	SF1	68	71.355	ENSTNIG00000004820	sf1	77	69.417	Tetraodon_nigroviridis
ENSFDAG00000009833	SF1	73	92.138	ENSTBEG00000013133	SF1	59	92.138	Tupaia_belangeri
ENSFDAG00000009833	SF1	79	93.864	ENSTTRG00000008857	SF1	83	92.650	Tursiops_truncatus
ENSFDAG00000009833	SF1	60	94.345	ENSUAMG00000011977	SF1	63	94.345	Ursus_americanus
ENSFDAG00000009833	SF1	100	89.464	ENSUMAG00000007268	SF1	92	99.535	Ursus_maritimus
ENSFDAG00000009833	SF1	61	100.000	ENSVPAG00000011912	SF1	65	99.194	Vicugna_pacos
ENSFDAG00000009833	SF1	79	99.091	ENSVVUG00000028585	SF1	94	96.705	Vulpes_vulpes
ENSFDAG00000009833	SF1	77	80.645	ENSXETG00000008434	sf1	67	81.863	Xenopus_tropicalis
ENSFDAG00000009833	SF1	65	85.205	ENSXCOG00000003704	sf1	75	80.941	Xiphophorus_couchianus
ENSFDAG00000009833	SF1	66	83.333	ENSXMAG00000007822	sf1	61	79.376	Xiphophorus_maculatus