EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFDAG00000010052 (Gene tree)
Gene ID: 104857355
Gene Symbol: USB1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Minus strand
Length: 14567 bases
Position: chrKN121439.1:651557-666123
Accession: 104857355
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000018139	HVSL	PF09749.9	1.5e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000028284	USB1-201	2052	XM_010617212	ENSFDAP00000018139	267 (aa)	XP_010615514	A0A091DW88

Gene Model

Click here to download ENSFDAG00000010052's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000010052's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000010052	USB1	100	84.270	ENSG00000103005	USB1	100	87.850	Homo_sapiens
ENSFDAG00000010052	USB1	98	45.520	ENSAPOG00000011942	usb1	99	45.520	Acanthochromis_polyacanthus
ENSFDAG00000010052	USB1	100	82.900	ENSAMEG00000017205	USB1	100	83.643	Ailuropoda_melanoleuca
ENSFDAG00000010052	USB1	84	54.018	ENSACIG00000012234	usb1	99	50.923	Amphilophus_citrinellus
ENSFDAG00000010052	USB1	84	53.125	ENSAOCG00000014831	usb1	99	46.975	Amphiprion_ocellaris
ENSFDAG00000010052	USB1	84	53.571	ENSAPEG00000000296	usb1	99	47.331	Amphiprion_percula
ENSFDAG00000010052	USB1	95	49.407	ENSATEG00000009348	usb1	99	48.571	Anabas_testudineus
ENSFDAG00000010052	USB1	84	68.142	ENSAPLG00000002756	USB1	100	68.142	Anas_platyrhynchos
ENSFDAG00000010052	USB1	84	62.832	ENSACAG00000015481	USB1	99	62.832	Anolis_carolinensis
ENSFDAG00000010052	USB1	100	83.146	ENSANAG00000035640	USB1	100	83.146	Aotus_nancymaae
ENSFDAG00000010052	USB1	84	53.571	ENSACLG00000020586	usb1	99	48.214	Astatotilapia_calliptera
ENSFDAG00000010052	USB1	94	47.410	ENSAMXG00000040146	usb1	78	47.410	Astyanax_mexicanus
ENSFDAG00000010052	USB1	100	83.146	ENSBTAG00000015758	USB1	100	83.146	Bos_taurus
ENSFDAG00000010052	USB1	100	84.270	ENSCJAG00000011733	USB1	100	84.270	Callithrix_jacchus
ENSFDAG00000010052	USB1	99	81.985	ENSCAFG00000008556	USB1	73	82.721	Canis_familiaris
ENSFDAG00000010052	USB1	99	82.331	ENSCAFG00020009263	USB1	99	82.331	Canis_lupus_dingo
ENSFDAG00000010052	USB1	100	82.022	ENSCHIG00000024290	USB1	100	82.022	Capra_hircus
ENSFDAG00000010052	USB1	100	84.644	ENSTSYG00000006997	USB1	100	84.644	Carlito_syrichta
ENSFDAG00000010052	USB1	87	78.788	ENSCAPG00000009057	USB1	99	78.788	Cavia_aperea
ENSFDAG00000010052	USB1	100	89.925	ENSCPOG00000014325	USB1	100	89.925	Cavia_porcellus
ENSFDAG00000010052	USB1	100	83.895	ENSCCAG00000022132	USB1	100	83.895	Cebus_capucinus
ENSFDAG00000010052	USB1	100	85.393	ENSCATG00000032174	USB1	100	86.142	Cercocebus_atys
ENSFDAG00000010052	USB1	66	94.886	ENSCLAG00000007363	USB1	100	94.886	Chinchilla_lanigera
ENSFDAG00000010052	USB1	100	85.393	ENSCSAG00000004783	USB1	100	86.142	Chlorocebus_sabaeus
ENSFDAG00000010052	USB1	90	65.145	ENSCPBG00000026943	USB1	100	62.007	Chrysemys_picta_bellii
ENSFDAG00000010052	USB1	84	32.906	ENSCING00000011490	-	98	30.935	Ciona_intestinalis
ENSFDAG00000010052	USB1	100	84.270	ENSCANG00000037135	USB1	100	85.019	Colobus_angolensis_palliatus
ENSFDAG00000010052	USB1	100	82.836	ENSCGRG00001011243	USB1	100	82.836	Cricetulus_griseus_chok1gshd
ENSFDAG00000010052	USB1	100	82.836	ENSCGRG00000013252	USB1	100	82.836	Cricetulus_griseus_crigri
ENSFDAG00000010052	USB1	98	45.985	ENSCSEG00000013881	usb1	99	45.985	Cynoglossus_semilaevis
ENSFDAG00000010052	USB1	84	49.561	ENSCVAG00000009252	usb1	97	50.000	Cyprinodon_variegatus
ENSFDAG00000010052	USB1	84	49.107	ENSDARG00000003841	usb1	99	44.364	Danio_rerio
ENSFDAG00000010052	USB1	100	80.899	ENSDORG00000001888	Usb1	100	80.899	Dipodomys_ordii
ENSFDAG00000010052	USB1	76	39.524	FBgn0037713	CG16790	97	35.507	Drosophila_melanogaster
ENSFDAG00000010052	USB1	100	68.539	ENSETEG00000019682	USB1	100	68.539	Echinops_telfairi
ENSFDAG00000010052	USB1	83	50.000	ENSEBUG00000005889	usb1	78	50.000	Eptatretus_burgeri
ENSFDAG00000010052	USB1	100	85.768	ENSEASG00005005484	USB1	100	85.768	Equus_asinus_asinus
ENSFDAG00000010052	USB1	100	85.768	ENSECAG00000019493	USB1	91	85.768	Equus_caballus
ENSFDAG00000010052	USB1	66	80.682	ENSEEUG00000000154	USB1	100	62.172	Erinaceus_europaeus
ENSFDAG00000010052	USB1	84	48.000	ENSELUG00000010974	usb1	99	43.750	Esox_lucius
ENSFDAG00000010052	USB1	100	85.393	ENSFCAG00000002693	USB1	100	85.393	Felis_catus
ENSFDAG00000010052	USB1	100	59.551	ENSFALG00000006876	USB1	99	59.551	Ficedula_albicollis
ENSFDAG00000010052	USB1	85	46.281	ENSFHEG00000012334	usb1	96	47.107	Fundulus_heteroclitus
ENSFDAG00000010052	USB1	84	49.776	ENSGMOG00000004228	usb1	99	49.776	Gadus_morhua
ENSFDAG00000010052	USB1	84	66.964	ENSGALG00000035604	USB1	100	62.687	Gallus_gallus
ENSFDAG00000010052	USB1	98	46.909	ENSGAFG00000021890	usb1	99	46.909	Gambusia_affinis
ENSFDAG00000010052	USB1	87	50.215	ENSGACG00000003257	usb1	99	48.188	Gasterosteus_aculeatus
ENSFDAG00000010052	USB1	100	62.409	ENSGAGG00000022572	USB1	100	62.409	Gopherus_agassizii
ENSFDAG00000010052	USB1	100	84.644	ENSGGOG00000017147	USB1	100	84.644	Gorilla_gorilla
ENSFDAG00000010052	USB1	87	53.680	ENSHBUG00000009823	usb1	99	48.746	Haplochromis_burtoni
ENSFDAG00000010052	USB1	100	94.757	ENSHGLG00000016078	USB1	98	94.757	Heterocephalus_glaber_female
ENSFDAG00000010052	USB1	100	94.757	ENSHGLG00100005562	USB1	98	94.757	Heterocephalus_glaber_male
ENSFDAG00000010052	USB1	98	51.341	ENSHCOG00000015633	usb1	99	52.107	Hippocampus_comes
ENSFDAG00000010052	USB1	98	47.222	ENSIPUG00000008601	usb1	99	47.222	Ictalurus_punctatus
ENSFDAG00000010052	USB1	100	83.883	ENSSTOG00000007548	USB1	100	84.249	Ictidomys_tridecemlineatus
ENSFDAG00000010052	USB1	100	85.019	ENSJJAG00000021859	Usb1	100	85.019	Jaculus_jaculus
ENSFDAG00000010052	USB1	96	47.860	ENSKMAG00000007200	usb1	99	46.786	Kryptolebias_marmoratus
ENSFDAG00000010052	USB1	75	51.244	ENSLBEG00000008452	usb1	82	46.721	Labrus_bergylta
ENSFDAG00000010052	USB1	84	55.895	ENSLACG00000000105	USB1	92	53.208	Latimeria_chalumnae
ENSFDAG00000010052	USB1	94	52.778	ENSLOCG00000000465	usb1	99	50.534	Lepisosteus_oculatus
ENSFDAG00000010052	USB1	100	65.441	ENSLAFG00000002267	USB1	100	65.809	Loxodonta_africana
ENSFDAG00000010052	USB1	100	85.393	ENSMFAG00000003926	USB1	100	86.142	Macaca_fascicularis
ENSFDAG00000010052	USB1	100	85.393	ENSMMUG00000022669	USB1	100	86.142	Macaca_mulatta
ENSFDAG00000010052	USB1	100	85.019	ENSMNEG00000042487	USB1	100	85.768	Macaca_nemestrina
ENSFDAG00000010052	USB1	100	85.393	ENSMLEG00000028756	USB1	100	86.142	Mandrillus_leucophaeus
ENSFDAG00000010052	USB1	98	48.201	ENSMAMG00000015092	usb1	99	48.201	Mastacembelus_armatus
ENSFDAG00000010052	USB1	84	53.571	ENSMZEG00005010008	usb1	99	48.387	Maylandia_zebra
ENSFDAG00000010052	USB1	100	81.273	ENSMAUG00000007832	Usb1	100	81.273	Mesocricetus_auratus
ENSFDAG00000010052	USB1	100	85.019	ENSMICG00000004900	USB1	100	85.393	Microcebus_murinus
ENSFDAG00000010052	USB1	100	80.597	ENSMOCG00000022647	Usb1	100	80.597	Microtus_ochrogaster
ENSFDAG00000010052	USB1	89	50.420	ENSMMOG00000000490	usb1	99	50.382	Mola_mola
ENSFDAG00000010052	USB1	100	67.407	ENSMODG00000014067	USB1	100	68.519	Monodelphis_domestica
ENSFDAG00000010052	USB1	84	53.125	ENSMALG00000005930	usb1	99	47.687	Monopterus_albus
ENSFDAG00000010052	USB1	100	81.273	MGP_CAROLIEiJ_G0031421	Usb1	100	82.301	Mus_caroli
ENSFDAG00000010052	USB1	100	82.022	ENSMUSG00000031792	Usb1	100	83.186	Mus_musculus
ENSFDAG00000010052	USB1	100	80.899	MGP_PahariEiJ_G0023019	Usb1	100	83.761	Mus_pahari
ENSFDAG00000010052	USB1	100	80.899	MGP_SPRETEiJ_G0032540	Usb1	100	80.899	Mus_spretus
ENSFDAG00000010052	USB1	100	81.041	ENSMPUG00000004684	USB1	96	81.784	Mustela_putorius_furo
ENSFDAG00000010052	USB1	87	89.177	ENSMLUG00000007400	USB1	100	89.177	Myotis_lucifugus
ENSFDAG00000010052	USB1	100	82.528	ENSNGAG00000009703	Usb1	100	83.271	Nannospalax_galili
ENSFDAG00000010052	USB1	87	48.918	ENSNBRG00000008747	usb1	99	52.804	Neolamprologus_brichardi
ENSFDAG00000010052	USB1	94	84.127	ENSNLEG00000003340	USB1	100	84.127	Nomascus_leucogenys
ENSFDAG00000010052	USB1	57	57.692	ENSMEUG00000003328	-	100	60.256	Notamacropus_eugenii
ENSFDAG00000010052	USB1	63	91.176	ENSOPRG00000011803	USB1	72	91.176	Ochotona_princeps
ENSFDAG00000010052	USB1	100	87.640	ENSODEG00000016214	USB1	100	87.640	Octodon_degus
ENSFDAG00000010052	USB1	98	48.746	ENSONIG00000011063	usb1	99	48.746	Oreochromis_niloticus
ENSFDAG00000010052	USB1	84	72.444	ENSOANG00000012118	USB1	94	72.444	Ornithorhynchus_anatinus
ENSFDAG00000010052	USB1	87	49.785	ENSORLG00000012479	usb1	99	46.863	Oryzias_latipes
ENSFDAG00000010052	USB1	87	49.785	ENSORLG00020018671	usb1	99	47.232	Oryzias_latipes_hni
ENSFDAG00000010052	USB1	87	49.785	ENSORLG00015009679	usb1	99	47.970	Oryzias_latipes_hsok
ENSFDAG00000010052	USB1	87	48.927	ENSOMEG00000012930	usb1	99	46.739	Oryzias_melastigma
ENSFDAG00000010052	USB1	100	79.775	ENSOGAG00000003273	USB1	100	79.775	Otolemur_garnettii
ENSFDAG00000010052	USB1	90	84.167	ENSOARG00000001107	USB1	92	84.167	Ovis_aries
ENSFDAG00000010052	USB1	100	84.644	ENSPPAG00000042137	USB1	100	84.644	Pan_paniscus
ENSFDAG00000010052	USB1	100	85.019	ENSPPRG00000024797	USB1	100	85.019	Panthera_pardus
ENSFDAG00000010052	USB1	100	85.019	ENSPTIG00000007506	USB1	100	85.019	Panthera_tigris_altaica
ENSFDAG00000010052	USB1	100	78.277	ENSPTRG00000008172	USB1	100	88.785	Pan_troglodytes
ENSFDAG00000010052	USB1	100	85.393	ENSPANG00000025138	USB1	100	86.142	Papio_anubis
ENSFDAG00000010052	USB1	96	48.062	ENSPKIG00000015109	usb1	99	44.407	Paramormyrops_kingsleyae
ENSFDAG00000010052	USB1	84	51.556	ENSPSIG00000004305	USB1	100	51.556	Pelodiscus_sinensis
ENSFDAG00000010052	USB1	84	52.466	ENSPMGG00000017725	usb1	98	49.042	Periophthalmus_magnuspinnatus
ENSFDAG00000010052	USB1	100	80.515	ENSPEMG00000016183	Usb1	100	80.515	Peromyscus_maniculatus_bairdii
ENSFDAG00000010052	USB1	88	48.101	ENSPMAG00000000462	usb1	100	48.101	Petromyzon_marinus
ENSFDAG00000010052	USB1	98	46.377	ENSPFOG00000011130	usb1	99	46.377	Poecilia_formosa
ENSFDAG00000010052	USB1	98	46.377	ENSPLAG00000009820	usb1	99	46.377	Poecilia_latipinna
ENSFDAG00000010052	USB1	98	46.739	ENSPMEG00000006402	usb1	99	46.739	Poecilia_mexicana
ENSFDAG00000010052	USB1	85	47.107	ENSPREG00000001047	usb1	98	47.521	Poecilia_reticulata
ENSFDAG00000010052	USB1	95	81.102	ENSPPYG00000007401	USB1	100	81.102	Pongo_abelii
ENSFDAG00000010052	USB1	100	86.142	ENSPCOG00000022612	USB1	100	86.142	Propithecus_coquereli
ENSFDAG00000010052	USB1	100	82.772	ENSPVAG00000004613	USB1	100	82.772	Pteropus_vampyrus
ENSFDAG00000010052	USB1	87	53.680	ENSPNYG00000022262	usb1	99	48.746	Pundamilia_nyererei
ENSFDAG00000010052	USB1	84	50.893	ENSPNAG00000011736	usb1	99	44.558	Pygocentrus_nattereri
ENSFDAG00000010052	USB1	100	83.146	ENSRNOG00000013216	Usb1	100	83.146	Rattus_norvegicus
ENSFDAG00000010052	USB1	100	79.026	ENSRBIG00000044466	USB1	100	89.720	Rhinopithecus_bieti
ENSFDAG00000010052	USB1	100	85.019	ENSRROG00000029211	USB1	100	85.768	Rhinopithecus_roxellana
ENSFDAG00000010052	USB1	100	83.895	ENSSBOG00000029362	USB1	100	83.895	Saimiri_boliviensis_boliviensis
ENSFDAG00000010052	USB1	82	73.516	ENSSHAG00000006993	USB1	98	68.548	Sarcophilus_harrisii
ENSFDAG00000010052	USB1	88	55.274	ENSSFOG00015023663	usb1	74	55.274	Scleropages_formosus
ENSFDAG00000010052	USB1	98	47.636	ENSSMAG00000015834	usb1	99	47.119	Scophthalmus_maximus
ENSFDAG00000010052	USB1	84	54.911	ENSSDUG00000002949	usb1	99	50.373	Seriola_dumerili
ENSFDAG00000010052	USB1	85	54.185	ENSSLDG00000014174	usb1	99	50.179	Seriola_lalandi_dorsalis
ENSFDAG00000010052	USB1	80	64.953	ENSSPUG00000006741	USB1	100	64.953	Sphenodon_punctatus
ENSFDAG00000010052	USB1	98	45.583	ENSSPAG00000007484	usb1	99	47.703	Stegastes_partitus
ENSFDAG00000010052	USB1	100	84.015	ENSSSCG00000002807	USB1	100	84.015	Sus_scrofa
ENSFDAG00000010052	USB1	79	67.453	ENSTGUG00000004792	USB1	99	60.967	Taeniopygia_guttata
ENSFDAG00000010052	USB1	98	46.269	ENSTRUG00000021069	usb1	99	46.269	Takifugu_rubripes
ENSFDAG00000010052	USB1	98	45.627	ENSTNIG00000000626	usb1	98	45.627	Tetraodon_nigroviridis
ENSFDAG00000010052	USB1	87	60.173	ENSTBEG00000001507	USB1	99	60.173	Tupaia_belangeri
ENSFDAG00000010052	USB1	100	82.156	ENSUAMG00000016823	USB1	100	82.900	Ursus_americanus
ENSFDAG00000010052	USB1	80	85.981	ENSUMAG00000021369	USB1	100	85.981	Ursus_maritimus
ENSFDAG00000010052	USB1	99	83.209	ENSVVUG00000023700	USB1	91	84.519	Vulpes_vulpes
ENSFDAG00000010052	USB1	81	56.881	ENSXETG00000013795	usb1	99	52.672	Xenopus_tropicalis
ENSFDAG00000010052	USB1	84	52.000	ENSXMAG00000024687	usb1	80	47.347	Xiphophorus_maculatus