EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFDAG00000010124 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Minus strand
Length: 2514 bases
Position: chrKN123998.1:444803-447316
Accession: 104849860
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000018051	LSM	PF01423.22	6.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000013915	LSM4-202	935	XM_010606467	ENSFDAP00000018051	138 (aa)	XP_010604769	-
ENSFDAT00000013913	LSM4-201	318	-	ENSFDAP00000018053	105 (aa)	-	-

Gene Model

Click here to download ENSFDAG00000010124's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000010124's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFDAG00000010124	LSM4	52	34.722	ENSFDAG00000010772	SNRPD3	56	34.722
ENSFDAG00000010124	LSM4	70	31.313	ENSFDAG00000000390	LSM2	81	34.177

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000010124	LSM4	100	97.101	ENSG00000130520	LSM4	100	96.800	Homo_sapiens
ENSFDAG00000010124	LSM4	71	96.939	ENSAPOG00000005643	lsm4	58	98.851	Acanthochromis_polyacanthus
ENSFDAG00000010124	LSM4	100	97.101	ENSAMEG00000011162	LSM4	95	97.101	Ailuropoda_melanoleuca
ENSFDAG00000010124	LSM4	99	78.169	ENSAOCG00000006414	lsm4	59	98.851	Amphiprion_ocellaris
ENSFDAG00000010124	LSM4	99	74.825	ENSAPEG00000006238	lsm4	58	98.851	Amphiprion_percula
ENSFDAG00000010124	LSM4	71	96.939	ENSATEG00000016559	lsm4	57	98.851	Anabas_testudineus
ENSFDAG00000010124	LSM4	100	97.101	ENSANAG00000034659	LSM4	100	96.800	Aotus_nancymaae
ENSFDAG00000010124	LSM4	79	83.740	ENSACLG00000022738	lsm4	59	98.851	Astatotilapia_calliptera
ENSFDAG00000010124	LSM4	99	80.292	ENSAMXG00000016932	lsm4	61	97.701	Astyanax_mexicanus
ENSFDAG00000010124	LSM4	100	97.101	ENSBTAG00000008578	LSM4	99	97.101	Bos_taurus
ENSFDAG00000010124	LSM4	59	76.829	WBGene00003078	lsm-4	67	76.829	Caenorhabditis_elegans
ENSFDAG00000010124	LSM4	100	97.101	ENSCJAG00000014171	LSM4	100	96.800	Callithrix_jacchus
ENSFDAG00000010124	LSM4	99	97.080	ENSCAFG00000014900	LSM4	90	97.080	Canis_familiaris
ENSFDAG00000010124	LSM4	100	97.101	ENSCAFG00020012137	LSM4	99	97.101	Canis_lupus_dingo
ENSFDAG00000010124	LSM4	100	97.101	ENSCHIG00000010928	LSM4	91	97.101	Capra_hircus
ENSFDAG00000010124	LSM4	100	96.377	ENSTSYG00000030906	LSM4	100	96.000	Carlito_syrichta
ENSFDAG00000010124	LSM4	100	96.377	ENSCAPG00000014140	LSM4	99	96.377	Cavia_aperea
ENSFDAG00000010124	LSM4	100	96.377	ENSCPOG00000024117	LSM4	99	96.377	Cavia_porcellus
ENSFDAG00000010124	LSM4	100	97.101	ENSCCAG00000036308	LSM4	100	96.800	Cebus_capucinus
ENSFDAG00000010124	LSM4	100	97.101	ENSCATG00000029311	LSM4	100	96.800	Cercocebus_atys
ENSFDAG00000010124	LSM4	100	97.826	ENSCLAG00000010828	LSM4	99	97.826	Chinchilla_lanigera
ENSFDAG00000010124	LSM4	100	97.101	ENSCSAG00000005370	LSM4	99	97.101	Chlorocebus_sabaeus
ENSFDAG00000010124	LSM4	100	81.159	ENSCPBG00000012925	LSM4	99	88.406	Chrysemys_picta_bellii
ENSFDAG00000010124	LSM4	62	91.765	ENSCING00000007519	-	69	91.954	Ciona_intestinalis
ENSFDAG00000010124	LSM4	62	92.941	ENSCSAVG00000008596	-	70	93.103	Ciona_savignyi
ENSFDAG00000010124	LSM4	100	97.101	ENSCANG00000043686	LSM4	100	96.800	Colobus_angolensis_palliatus
ENSFDAG00000010124	LSM4	100	92.754	ENSCGRG00001014436	Lsm4	99	92.754	Cricetulus_griseus_chok1gshd
ENSFDAG00000010124	LSM4	100	92.754	ENSCGRG00000009398	Lsm4	100	92.754	Cricetulus_griseus_crigri
ENSFDAG00000010124	LSM4	70	95.833	ENSCSEG00000016127	lsm4	61	97.701	Cynoglossus_semilaevis
ENSFDAG00000010124	LSM4	88	74.797	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSFDAG00000010124	LSM4	99	77.372	ENSCVAG00000010601	lsm4	61	97.701	Cyprinodon_variegatus
ENSFDAG00000010124	LSM4	97	78.571	ENSDARG00000023852	lsm4	61	98.851	Danio_rerio
ENSFDAG00000010124	LSM4	100	96.377	ENSDORG00000024225	Lsm4	99	96.377	Dipodomys_ordii
ENSFDAG00000010124	LSM4	70	81.250	FBgn0032240	CG17768	56	88.506	Drosophila_melanogaster
ENSFDAG00000010124	LSM4	90	95.161	ENSETEG00000007762	-	100	95.161	Echinops_telfairi
ENSFDAG00000010124	LSM4	54	93.243	ENSEBUG00000003639	-	52	88.608	Eptatretus_burgeri
ENSFDAG00000010124	LSM4	100	97.101	ENSECAG00000010141	LSM4	56	97.101	Equus_caballus
ENSFDAG00000010124	LSM4	96	82.836	ENSELUG00000012821	lsm4	66	98.851	Esox_lucius
ENSFDAG00000010124	LSM4	100	97.101	ENSFCAG00000040580	LSM4	100	96.800	Felis_catus
ENSFDAG00000010124	LSM4	100	80.435	ENSFALG00000009478	LSM4	99	88.406	Ficedula_albicollis
ENSFDAG00000010124	LSM4	70	96.875	ENSGMOG00000007729	lsm4	59	98.851	Gadus_morhua
ENSFDAG00000010124	LSM4	100	80.435	ENSGALG00000003385	LSM4	99	88.406	Gallus_gallus
ENSFDAG00000010124	LSM4	79	82.927	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSFDAG00000010124	LSM4	68	97.872	ENSGACG00000008140	lsm4	58	98.851	Gasterosteus_aculeatus
ENSFDAG00000010124	LSM4	100	81.159	ENSGAGG00000017812	LSM4	99	88.406	Gopherus_agassizii
ENSFDAG00000010124	LSM4	100	97.101	ENSGGOG00000012914	-	100	96.800	Gorilla_gorilla
ENSFDAG00000010124	LSM4	100	95.652	ENSHGLG00000006568	LSM4	99	95.652	Heterocephalus_glaber_female
ENSFDAG00000010124	LSM4	67	100.000	ENSHGLG00100007894	LSM4	99	100.000	Heterocephalus_glaber_male
ENSFDAG00000010124	LSM4	99	77.206	ENSHCOG00000008819	lsm4	61	98.851	Hippocampus_comes
ENSFDAG00000010124	LSM4	99	80.292	ENSIPUG00000005368	Lsm4	61	98.851	Ictalurus_punctatus
ENSFDAG00000010124	LSM4	100	97.101	ENSSTOG00000016494	LSM4	99	97.101	Ictidomys_tridecemlineatus
ENSFDAG00000010124	LSM4	100	94.928	ENSJJAG00000017420	Lsm4	99	94.928	Jaculus_jaculus
ENSFDAG00000010124	LSM4	62	97.647	ENSKMAG00000005073	lsm4	60	97.701	Kryptolebias_marmoratus
ENSFDAG00000010124	LSM4	71	96.939	ENSLBEG00000027930	lsm4	58	98.851	Labrus_bergylta
ENSFDAG00000010124	LSM4	99	82.353	ENSLACG00000015861	LSM4	97	82.353	Latimeria_chalumnae
ENSFDAG00000010124	LSM4	93	82.812	ENSLOCG00000002025	lsm4	62	97.701	Lepisosteus_oculatus
ENSFDAG00000010124	LSM4	100	95.652	ENSLAFG00000017459	LSM4	99	95.652	Loxodonta_africana
ENSFDAG00000010124	LSM4	100	97.101	ENSMFAG00000031194	LSM4	100	96.800	Macaca_fascicularis
ENSFDAG00000010124	LSM4	100	97.101	ENSMMUG00000004405	LSM4	100	96.800	Macaca_mulatta
ENSFDAG00000010124	LSM4	100	97.101	ENSMNEG00000042899	LSM4	100	96.800	Macaca_nemestrina
ENSFDAG00000010124	LSM4	100	97.101	ENSMLEG00000027948	LSM4	100	96.800	Mandrillus_leucophaeus
ENSFDAG00000010124	LSM4	99	79.562	ENSMAMG00000006190	lsm4	61	98.851	Mastacembelus_armatus
ENSFDAG00000010124	LSM4	79	83.740	ENSMZEG00005016420	lsm4	60	98.851	Maylandia_zebra
ENSFDAG00000010124	LSM4	100	82.014	ENSMGAG00000004976	LSM4	99	87.681	Meleagris_gallopavo
ENSFDAG00000010124	LSM4	100	96.377	ENSMICG00000000222	LSM4	100	96.000	Microcebus_murinus
ENSFDAG00000010124	LSM4	100	93.478	ENSMOCG00000020861	Lsm4	99	93.478	Microtus_ochrogaster
ENSFDAG00000010124	LSM4	90	93.548	ENSMODG00000015044	-	100	93.548	Monodelphis_domestica
ENSFDAG00000010124	LSM4	99	76.978	ENSMALG00000018159	lsm4	61	97.701	Monopterus_albus
ENSFDAG00000010124	LSM4	100	93.478	MGP_CAROLIEiJ_G0031158	Lsm4	99	93.478	Mus_caroli
ENSFDAG00000010124	LSM4	100	93.478	ENSMUSG00000031848	Lsm4	99	93.478	Mus_musculus
ENSFDAG00000010124	LSM4	100	93.478	MGP_PahariEiJ_G0021623	Lsm4	99	93.478	Mus_pahari
ENSFDAG00000010124	LSM4	100	93.478	MGP_SPRETEiJ_G0032276	Lsm4	99	93.478	Mus_spretus
ENSFDAG00000010124	LSM4	100	97.101	ENSMPUG00000015589	LSM4	99	97.101	Mustela_putorius_furo
ENSFDAG00000010124	LSM4	100	97.101	ENSMLUG00000004010	LSM4	99	97.101	Myotis_lucifugus
ENSFDAG00000010124	LSM4	100	93.478	ENSNGAG00000008644	Lsm4	100	93.233	Nannospalax_galili
ENSFDAG00000010124	LSM4	71	96.939	ENSNBRG00000022150	lsm4	54	98.851	Neolamprologus_brichardi
ENSFDAG00000010124	LSM4	90	90.323	ENSMEUG00000013229	LSM4	100	90.323	Notamacropus_eugenii
ENSFDAG00000010124	LSM4	90	91.129	ENSOPRG00000005575	LSM4	100	82.258	Ochotona_princeps
ENSFDAG00000010124	LSM4	100	74.638	ENSODEG00000011712	-	99	74.638	Octodon_degus
ENSFDAG00000010124	LSM4	100	89.855	ENSODEG00000004519	-	99	74.638	Octodon_degus
ENSFDAG00000010124	LSM4	100	98.551	ENSODEG00000020549	-	99	98.551	Octodon_degus
ENSFDAG00000010124	LSM4	79	83.740	ENSONIG00000012724	lsm4	59	98.851	Oreochromis_niloticus
ENSFDAG00000010124	LSM4	63	93.407	ENSOANG00000007434	LSM4	78	93.407	Ornithorhynchus_anatinus
ENSFDAG00000010124	LSM4	99	83.571	ENSORLG00000008391	lsm4	60	97.701	Oryzias_latipes
ENSFDAG00000010124	LSM4	99	72.667	ENSORLG00020014829	lsm4	60	97.701	Oryzias_latipes_hni
ENSFDAG00000010124	LSM4	99	73.333	ENSORLG00015010205	lsm4	60	97.701	Oryzias_latipes_hsok
ENSFDAG00000010124	LSM4	100	82.609	ENSOMEG00000003606	lsm4	60	97.701	Oryzias_melastigma
ENSFDAG00000010124	LSM4	72	97.980	ENSOGAG00000027992	LSM4	60	100.000	Otolemur_garnettii
ENSFDAG00000010124	LSM4	86	96.639	ENSOARG00000012553	LSM4	94	96.639	Ovis_aries
ENSFDAG00000010124	LSM4	100	97.101	ENSPPAG00000044045	-	100	96.800	Pan_paniscus
ENSFDAG00000010124	LSM4	100	97.101	ENSPPRG00000018264	LSM4	100	96.800	Panthera_pardus
ENSFDAG00000010124	LSM4	100	97.101	ENSPTIG00000006306	LSM4	100	97.101	Panthera_tigris_altaica
ENSFDAG00000010124	LSM4	100	97.101	ENSPTRG00000031470	LSM4	100	96.800	Pan_troglodytes
ENSFDAG00000010124	LSM4	100	97.101	ENSPANG00000014399	LSM4	100	96.800	Papio_anubis
ENSFDAG00000010124	LSM4	99	81.618	ENSPKIG00000006154	lsm4	62	98.851	Paramormyrops_kingsleyae
ENSFDAG00000010124	LSM4	100	80.435	ENSPSIG00000012358	LSM4	100	88.406	Pelodiscus_sinensis
ENSFDAG00000010124	LSM4	100	93.478	ENSPEMG00000001358	Lsm4	99	93.478	Peromyscus_maniculatus_bairdii
ENSFDAG00000010124	LSM4	99	76.224	ENSPLAG00000016267	lsm4	61	98.851	Poecilia_latipinna
ENSFDAG00000010124	LSM4	99	79.137	ENSPMEG00000016378	lsm4	63	98.851	Poecilia_mexicana
ENSFDAG00000010124	LSM4	100	97.101	ENSPPYG00000009736	LSM4	99	97.101	Pongo_abelii
ENSFDAG00000010124	LSM4	90	95.161	ENSPCAG00000008513	LSM4	100	95.161	Procavia_capensis
ENSFDAG00000010124	LSM4	100	96.377	ENSPCOG00000019837	LSM4	100	96.000	Propithecus_coquereli
ENSFDAG00000010124	LSM4	100	97.101	ENSPVAG00000015383	LSM4	99	97.101	Pteropus_vampyrus
ENSFDAG00000010124	LSM4	79	83.740	ENSPNYG00000016794	lsm4	60	98.851	Pundamilia_nyererei
ENSFDAG00000010124	LSM4	96	82.836	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSFDAG00000010124	LSM4	100	93.478	ENSRNOG00000019572	Lsm4	99	93.478	Rattus_norvegicus
ENSFDAG00000010124	LSM4	100	97.101	ENSRBIG00000024717	LSM4	100	96.800	Rhinopithecus_bieti
ENSFDAG00000010124	LSM4	100	97.101	ENSRROG00000045706	LSM4	100	96.800	Rhinopithecus_roxellana
ENSFDAG00000010124	LSM4	59	40.217	YER112W	LSM4	51	38.947	Saccharomyces_cerevisiae
ENSFDAG00000010124	LSM4	91	96.800	ENSSBOG00000022455	LSM4	100	96.800	Saimiri_boliviensis_boliviensis
ENSFDAG00000010124	LSM4	100	94.203	ENSSHAG00000011559	LSM4	99	94.203	Sarcophilus_harrisii
ENSFDAG00000010124	LSM4	99	80.147	ENSSFOG00015021067	lsm4	62	98.851	Scleropages_formosus
ENSFDAG00000010124	LSM4	99	71.631	ENSSMAG00000021020	lsm4	94	72.340	Scophthalmus_maximus
ENSFDAG00000010124	LSM4	71	96.939	ENSSDUG00000009588	lsm4	52	98.851	Seriola_dumerili
ENSFDAG00000010124	LSM4	71	96.939	ENSSLDG00000006827	lsm4	52	98.851	Seriola_lalandi_dorsalis
ENSFDAG00000010124	LSM4	63	98.851	ENSSPUG00000010166	LSM4	56	98.851	Sphenodon_punctatus
ENSFDAG00000010124	LSM4	71	96.939	ENSSPAG00000011615	lsm4	58	98.851	Stegastes_partitus
ENSFDAG00000010124	LSM4	100	97.101	ENSSSCG00000034314	LSM4	99	97.101	Sus_scrofa
ENSFDAG00000010124	LSM4	79	82.927	ENSTRUG00000021737	lsm4	61	96.552	Takifugu_rubripes
ENSFDAG00000010124	LSM4	99	80.576	ENSTNIG00000010191	lsm4	60	97.701	Tetraodon_nigroviridis
ENSFDAG00000010124	LSM4	100	97.101	ENSUAMG00000000665	LSM4	99	97.101	Ursus_americanus
ENSFDAG00000010124	LSM4	100	97.101	ENSUMAG00000009013	LSM4	99	97.101	Ursus_maritimus
ENSFDAG00000010124	LSM4	100	97.101	ENSVVUG00000008136	LSM4	71	97.101	Vulpes_vulpes
ENSFDAG00000010124	LSM4	100	89.855	ENSXETG00000024933	lsm4	99	87.681	Xenopus_tropicalis