EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFDAG00000012197 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 1506 bases
Position: chrKN123699.1:1583320-1584825
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000002526	NMD3	PF04981.13	3.8e-66	1	1
ENSFDAP00000002515	NMD3	PF04981.13	1.1e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000016327	-	1320	-	ENSFDAP00000002526	439 (aa)	-	-
ENSFDAT00000016326	-	1305	-	ENSFDAP00000002515	434 (aa)	-	-

Gene Model

Click here to download ENSFDAG00000012197's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000012197's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFDAG00000012197	-	99	81.212	ENSFDAG00000013724	-	98	80.202

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000012197	-	100	76.587	ENSG00000169251	NMD3	100	88.073	Homo_sapiens
ENSFDAG00000012197	-	98	65.092	ENSAPOG00000022912	nmd3	97	65.112	Acanthochromis_polyacanthus
ENSFDAG00000012197	-	100	76.436	ENSAMEG00000001584	NMD3	99	76.040	Ailuropoda_melanoleuca
ENSFDAG00000012197	-	98	63.048	ENSACIG00000015196	nmd3	97	63.093	Amphilophus_citrinellus
ENSFDAG00000012197	-	98	65.298	ENSAOCG00000009086	nmd3	97	65.314	Amphiprion_ocellaris
ENSFDAG00000012197	-	98	65.503	ENSAPEG00000000329	nmd3	97	65.517	Amphiprion_percula
ENSFDAG00000012197	-	98	65.503	ENSATEG00000014351	nmd3	97	65.314	Anabas_testudineus
ENSFDAG00000012197	-	99	66.465	ENSAPLG00000014786	NMD3	98	66.465	Anas_platyrhynchos
ENSFDAG00000012197	-	100	66.667	ENSACAG00000007349	NMD3	99	66.667	Anolis_carolinensis
ENSFDAG00000012197	-	99	76.104	ENSANAG00000026434	NMD3	99	75.703	Aotus_nancymaae
ENSFDAG00000012197	-	98	65.092	ENSACLG00000015520	nmd3	97	64.909	Astatotilapia_calliptera
ENSFDAG00000012197	-	98	65.914	ENSAMXG00000014415	nmd3	97	65.923	Astyanax_mexicanus
ENSFDAG00000012197	-	99	77.062	ENSBTAG00000016228	NMD3	99	77.264	Bos_taurus
ENSFDAG00000012197	-	98	43.750	WBGene00012030	T25G3.3	96	43.750	Caenorhabditis_elegans
ENSFDAG00000012197	-	98	77.143	ENSCJAG00000002900	NMD3	97	75.855	Callithrix_jacchus
ENSFDAG00000012197	-	97	78.351	ENSCAFG00000014352	NMD3	95	77.938	Canis_familiaris
ENSFDAG00000012197	-	98	78.252	ENSCAFG00020021145	NMD3	97	77.846	Canis_lupus_dingo
ENSFDAG00000012197	-	99	76.876	ENSCHIG00000016015	NMD3	99	76.861	Capra_hircus
ENSFDAG00000012197	-	98	79.065	ENSTSYG00000002155	NMD3	97	78.659	Carlito_syrichta
ENSFDAG00000012197	-	78	75.250	ENSCAPG00000017861	NMD3	93	74.750	Cavia_aperea
ENSFDAG00000012197	-	84	76.744	ENSCPOG00000005953	NMD3	94	75.286	Cavia_porcellus
ENSFDAG00000012197	-	100	76.190	ENSCCAG00000037460	NMD3	100	75.794	Cebus_capucinus
ENSFDAG00000012197	-	100	76.786	ENSCATG00000030022	NMD3	100	76.389	Cercocebus_atys
ENSFDAG00000012197	-	98	78.763	ENSCLAG00000003155	NMD3	84	92.188	Chinchilla_lanigera
ENSFDAG00000012197	-	100	76.786	ENSCSAG00000012333	NMD3	100	76.389	Chlorocebus_sabaeus
ENSFDAG00000012197	-	77	69.565	ENSCHOG00000001240	NMD3	78	69.565	Choloepus_hoffmanni
ENSFDAG00000012197	-	100	66.865	ENSCPBG00000018318	NMD3	99	68.354	Chrysemys_picta_bellii
ENSFDAG00000012197	-	96	45.661	ENSCING00000002129	-	96	45.868	Ciona_intestinalis
ENSFDAG00000012197	-	87	44.419	ENSCSAVG00000001120	-	97	45.227	Ciona_savignyi
ENSFDAG00000012197	-	98	72.449	ENSCANG00000042939	NMD3	95	70.518	Colobus_angolensis_palliatus
ENSFDAG00000012197	-	99	66.186	ENSCGRG00001001792	Nmd3	96	69.248	Cricetulus_griseus_chok1gshd
ENSFDAG00000012197	-	97	77.226	ENSCGRG00000007947	Nmd3	98	76.639	Cricetulus_griseus_crigri
ENSFDAG00000012197	-	98	64.476	ENSCSEG00000017954	nmd3	97	64.300	Cynoglossus_semilaevis
ENSFDAG00000012197	-	98	67.320	ENSCVAG00000004672	nmd3	97	66.738	Cyprinodon_variegatus
ENSFDAG00000012197	-	98	64.959	ENSDARG00000015676	nmd3	97	64.777	Danio_rerio
ENSFDAG00000012197	-	100	74.206	ENSDNOG00000045222	NMD3	100	73.810	Dasypus_novemcinctus
ENSFDAG00000012197	-	98	82.045	ENSDORG00000005716	Nmd3	100	79.867	Dipodomys_ordii
ENSFDAG00000012197	-	98	46.371	FBgn0023542	Nmd3	95	46.371	Drosophila_melanogaster
ENSFDAG00000012197	-	100	64.881	ENSETEG00000003168	NMD3	97	66.667	Echinops_telfairi
ENSFDAG00000012197	-	90	50.222	ENSEBUG00000014316	nmd3	97	50.222	Eptatretus_burgeri
ENSFDAG00000012197	-	98	78.367	ENSEASG00005018672	NMD3	97	77.959	Equus_asinus_asinus
ENSFDAG00000012197	-	97	78.969	ENSECAG00000000188	NMD3	95	78.557	Equus_caballus
ENSFDAG00000012197	-	94	57.749	ENSEEUG00000010642	-	100	57.749	Erinaceus_europaeus
ENSFDAG00000012197	-	100	62.178	ENSELUG00000024123	nmd3	99	62.178	Esox_lucius
ENSFDAG00000012197	-	100	75.992	ENSFCAG00000022867	NMD3	99	75.595	Felis_catus
ENSFDAG00000012197	-	95	67.722	ENSFALG00000008711	NMD3	99	67.722	Ficedula_albicollis
ENSFDAG00000012197	-	98	64.066	ENSFHEG00000000415	nmd3	97	64.097	Fundulus_heteroclitus
ENSFDAG00000012197	-	98	62.628	ENSGMOG00000009675	nmd3	99	61.602	Gadus_morhua
ENSFDAG00000012197	-	98	68.454	ENSGALG00000009533	NMD3	97	68.293	Gallus_gallus
ENSFDAG00000012197	-	97	64.583	ENSGAFG00000012798	nmd3	94	64.040	Gambusia_affinis
ENSFDAG00000012197	-	98	63.655	ENSGACG00000010028	nmd3	97	63.489	Gasterosteus_aculeatus
ENSFDAG00000012197	-	100	67.460	ENSGAGG00000006556	NMD3	99	67.460	Gopherus_agassizii
ENSFDAG00000012197	-	100	76.984	ENSGGOG00000007157	NMD3	100	76.587	Gorilla_gorilla
ENSFDAG00000012197	-	98	65.756	ENSGGOG00000028590	-	100	64.536	Gorilla_gorilla
ENSFDAG00000012197	-	98	65.092	ENSHBUG00000001781	nmd3	97	64.909	Haplochromis_burtoni
ENSFDAG00000012197	-	99	67.603	ENSHGLG00000010477	-	100	65.890	Heterocephalus_glaber_female
ENSFDAG00000012197	-	99	79.276	ENSHGLG00000014451	-	99	78.873	Heterocephalus_glaber_female
ENSFDAG00000012197	-	99	67.603	ENSHGLG00100001042	-	100	65.890	Heterocephalus_glaber_male
ENSFDAG00000012197	-	99	79.276	ENSHGLG00100006613	-	99	78.873	Heterocephalus_glaber_male
ENSFDAG00000012197	-	97	65.696	ENSHCOG00000004292	nmd3	89	65.092	Hippocampus_comes
ENSFDAG00000012197	-	98	66.119	ENSIPUG00000005073	nmd3	97	65.720	Ictalurus_punctatus
ENSFDAG00000012197	-	100	77.579	ENSSTOG00000001899	NMD3	100	77.183	Ictidomys_tridecemlineatus
ENSFDAG00000012197	-	98	78.144	ENSJJAG00000019759	Nmd3	99	78.144	Jaculus_jaculus
ENSFDAG00000012197	-	98	65.298	ENSKMAG00000020427	nmd3	97	64.300	Kryptolebias_marmoratus
ENSFDAG00000012197	-	98	64.213	ENSLBEG00000022216	nmd3	97	64.040	Labrus_bergylta
ENSFDAG00000012197	-	97	62.630	ENSLACG00000005731	NMD3	98	62.551	Latimeria_chalumnae
ENSFDAG00000012197	-	98	65.517	ENSLOCG00000003561	nmd3	97	65.517	Lepisosteus_oculatus
ENSFDAG00000012197	-	100	74.851	ENSLAFG00000007231	NMD3	100	74.653	Loxodonta_africana
ENSFDAG00000012197	-	100	76.587	ENSMFAG00000040934	NMD3	100	76.190	Macaca_fascicularis
ENSFDAG00000012197	-	98	77.551	ENSMMUG00000009564	NMD3	95	75.498	Macaca_mulatta
ENSFDAG00000012197	-	100	76.587	ENSMNEG00000034626	NMD3	100	76.190	Macaca_nemestrina
ENSFDAG00000012197	-	88	75.450	ENSMLEG00000002741	NMD3	100	75.450	Mandrillus_leucophaeus
ENSFDAG00000012197	-	98	64.887	ENSMAMG00000012427	nmd3	97	64.706	Mastacembelus_armatus
ENSFDAG00000012197	-	98	65.092	ENSMZEG00005016888	nmd3	97	64.909	Maylandia_zebra
ENSFDAG00000012197	-	98	68.247	ENSMGAG00000010498	NMD3	97	68.089	Meleagris_gallopavo
ENSFDAG00000012197	-	99	76.566	ENSMAUG00000000633	Nmd3	98	76.162	Mesocricetus_auratus
ENSFDAG00000012197	-	100	76.389	ENSMICG00000049196	NMD3	100	75.992	Microcebus_murinus
ENSFDAG00000012197	-	98	76.327	ENSMOCG00000005180	Nmd3	98	75.918	Microtus_ochrogaster
ENSFDAG00000012197	-	98	64.549	ENSMMOG00000012765	nmd3	97	64.170	Mola_mola
ENSFDAG00000012197	-	98	56.040	ENSMODG00000016296	NMD3	97	58.614	Monodelphis_domestica
ENSFDAG00000012197	-	98	65.503	ENSMALG00000009256	nmd3	97	64.909	Monopterus_albus
ENSFDAG00000012197	-	99	76.364	MGP_CAROLIEiJ_G0025069	Nmd3	91	85.507	Mus_caroli
ENSFDAG00000012197	-	99	76.364	ENSMUSG00000027787	Nmd3	91	85.507	Mus_musculus
ENSFDAG00000012197	-	99	76.162	MGP_PahariEiJ_G0026512	Nmd3	100	76.316	Mus_pahari
ENSFDAG00000012197	-	99	76.566	MGP_SPRETEiJ_G0026011	Nmd3	91	85.507	Mus_spretus
ENSFDAG00000012197	-	100	76.984	ENSMPUG00000002955	NMD3	99	76.587	Mustela_putorius_furo
ENSFDAG00000012197	-	98	73.171	ENSMLUG00000000701	NMD3	97	70.528	Myotis_lucifugus
ENSFDAG00000012197	-	98	78.367	ENSNGAG00000012307	Nmd3	99	76.295	Nannospalax_galili
ENSFDAG00000012197	-	98	65.092	ENSNBRG00000003324	nmd3	97	64.909	Neolamprologus_brichardi
ENSFDAG00000012197	-	100	76.984	ENSNLEG00000004655	NMD3	100	76.587	Nomascus_leucogenys
ENSFDAG00000012197	-	73	78.070	ENSOPRG00000007690	-	73	78.070	Ochotona_princeps
ENSFDAG00000012197	-	99	78.340	ENSODEG00000006270	NMD3	99	78.439	Octodon_degus
ENSFDAG00000012197	-	98	65.503	ENSONIG00000003643	nmd3	97	65.314	Oreochromis_niloticus
ENSFDAG00000012197	-	97	79.175	ENSOCUG00000017454	NMD3	99	77.264	Oryctolagus_cuniculus
ENSFDAG00000012197	-	98	64.330	ENSORLG00000006279	nmd3	97	64.155	Oryzias_latipes
ENSFDAG00000012197	-	98	64.124	ENSORLG00020003843	nmd3	97	63.951	Oryzias_latipes_hni
ENSFDAG00000012197	-	98	63.843	ENSORLG00015006379	nmd3	97	63.673	Oryzias_latipes_hsok
ENSFDAG00000012197	-	98	65.298	ENSOMEG00000012144	nmd3	97	65.314	Oryzias_melastigma
ENSFDAG00000012197	-	98	77.642	ENSOGAG00000014910	NMD3	98	77.439	Otolemur_garnettii
ENSFDAG00000012197	-	98	77.033	ENSOARG00000001883	NMD3	96	77.033	Ovis_aries
ENSFDAG00000012197	-	100	76.786	ENSPPAG00000043829	NMD3	100	76.190	Pan_paniscus
ENSFDAG00000012197	-	98	77.551	ENSPPRG00000000724	NMD3	98	75.498	Panthera_pardus
ENSFDAG00000012197	-	100	75.992	ENSPTIG00000016761	NMD3	99	75.595	Panthera_tigris_altaica
ENSFDAG00000012197	-	100	76.587	ENSPTRG00000015586	NMD3	100	76.190	Pan_troglodytes
ENSFDAG00000012197	-	98	77.755	ENSPANG00000006665	NMD3	95	75.896	Papio_anubis
ENSFDAG00000012197	-	98	64.682	ENSPKIG00000009928	nmd3	97	63.489	Paramormyrops_kingsleyae
ENSFDAG00000012197	-	100	66.468	ENSPSIG00000007591	NMD3	99	66.071	Pelodiscus_sinensis
ENSFDAG00000012197	-	98	61.031	ENSPMGG00000014015	nmd3	97	60.692	Periophthalmus_magnuspinnatus
ENSFDAG00000012197	-	99	76.970	ENSPEMG00000021880	Nmd3	99	76.518	Peromyscus_maniculatus_bairdii
ENSFDAG00000012197	-	99	69.777	ENSPCIG00000020869	NMD3	98	69.777	Phascolarctos_cinereus
ENSFDAG00000012197	-	98	65.503	ENSPFOG00000012103	nmd3	97	65.314	Poecilia_formosa
ENSFDAG00000012197	-	98	65.503	ENSPLAG00000008087	nmd3	97	65.314	Poecilia_latipinna
ENSFDAG00000012197	-	98	65.503	ENSPMEG00000008506	nmd3	97	65.314	Poecilia_mexicana
ENSFDAG00000012197	-	98	65.503	ENSPREG00000001848	nmd3	97	65.314	Poecilia_reticulata
ENSFDAG00000012197	-	100	76.984	ENSPPYG00000014263	NMD3	100	76.587	Pongo_abelii
ENSFDAG00000012197	-	90	59.783	ENSPCAG00000009851	NMD3	100	59.783	Procavia_capensis
ENSFDAG00000012197	-	82	92.523	ENSPVAG00000003301	NMD3	83	92.523	Pteropus_vampyrus
ENSFDAG00000012197	-	98	65.092	ENSPNYG00000006778	nmd3	97	64.909	Pundamilia_nyererei
ENSFDAG00000012197	-	98	66.119	ENSPNAG00000009442	nmd3	97	64.300	Pygocentrus_nattereri
ENSFDAG00000012197	-	99	76.364	ENSRNOG00000009310	Nmd3	98	76.364	Rattus_norvegicus
ENSFDAG00000012197	-	100	72.817	ENSRBIG00000040379	NMD3	100	72.222	Rhinopithecus_bieti
ENSFDAG00000012197	-	100	76.984	ENSRROG00000036181	NMD3	100	76.587	Rhinopithecus_roxellana
ENSFDAG00000012197	-	95	36.000	YHR170W	NMD3	95	36.200	Saccharomyces_cerevisiae
ENSFDAG00000012197	-	98	78.351	ENSSBOG00000024021	NMD3	98	77.642	Saimiri_boliviensis_boliviensis
ENSFDAG00000012197	-	98	65.510	ENSSHAG00000016044	NMD3	97	65.510	Sarcophilus_harrisii
ENSFDAG00000012197	-	98	64.476	ENSSFOG00015003609	nmd3	97	64.097	Scleropages_formosus
ENSFDAG00000012197	-	98	63.244	ENSSMAG00000012887	nmd3	97	63.083	Scophthalmus_maximus
ENSFDAG00000012197	-	98	65.298	ENSSDUG00000023721	nmd3	97	65.112	Seriola_dumerili
ENSFDAG00000012197	-	98	65.092	ENSSLDG00000006565	nmd3	97	64.909	Seriola_lalandi_dorsalis
ENSFDAG00000012197	-	98	76.082	ENSSARG00000010402	NMD3	99	75.670	Sorex_araneus
ENSFDAG00000012197	-	99	65.531	ENSSPUG00000018791	NMD3	100	65.130	Sphenodon_punctatus
ENSFDAG00000012197	-	98	65.503	ENSSPAG00000014328	nmd3	97	65.314	Stegastes_partitus
ENSFDAG00000012197	-	100	76.389	ENSSSCG00000022952	NMD3	100	75.992	Sus_scrofa
ENSFDAG00000012197	-	92	67.615	ENSTGUG00000015141	-	99	67.615	Taeniopygia_guttata
ENSFDAG00000012197	-	98	67.835	ENSTGUG00000011140	-	98	67.683	Taeniopygia_guttata
ENSFDAG00000012197	-	98	64.476	ENSTRUG00000005958	nmd3	97	64.503	Takifugu_rubripes
ENSFDAG00000012197	-	87	90.000	ENSTBEG00000011783	-	86	90.000	Tupaia_belangeri
ENSFDAG00000012197	-	99	72.525	ENSTTRG00000012938	NMD3	100	70.635	Tursiops_truncatus
ENSFDAG00000012197	-	88	79.849	ENSUAMG00000009305	-	96	80.928	Ursus_americanus
ENSFDAG00000012197	-	99	76.707	ENSUMAG00000011070	NMD3	99	76.258	Ursus_maritimus
ENSFDAG00000012197	-	100	76.389	ENSVPAG00000008779	NMD3	100	75.992	Vicugna_pacos
ENSFDAG00000012197	-	100	76.190	ENSVVUG00000023055	NMD3	99	76.056	Vulpes_vulpes
ENSFDAG00000012197	-	100	66.667	ENSXETG00000027727	nmd3	99	66.071	Xenopus_tropicalis
ENSFDAG00000012197	-	60	65.686	ENSXCOG00000012490	nmd3	86	65.686	Xiphophorus_couchianus
ENSFDAG00000012197	-	98	65.092	ENSXMAG00000018406	nmd3	97	64.909	Xiphophorus_maculatus