EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFDAG00000012577 (Gene tree)
Gene ID: 104873103
Gene Symbol: CMSS1
Alias: C3orf26|MGC4308
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Minus strand
Length: 22219 bases
Position: chrKN123138.1:1090737-1112955
Accession: 104873103
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000003033	CMS1	PF14617.6	2.3e-34	1	1
ENSFDAP00000003033	DEAD	PF00270.29	2.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000016761	CMSS1-201	2866	XM_010639641	ENSFDAP00000003033	228 (aa)	XP_010637943	-

Gene Model

Click here to download ENSFDAG00000012577's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000012577's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000012577	CMSS1	100	90.789	ENSG00000184220	CMSS1	99	90.123	Homo_sapiens
ENSFDAG00000012577	CMSS1	89	65.347	ENSAPOG00000010604	cmss1	82	65.347	Acanthochromis_polyacanthus
ENSFDAG00000012577	CMSS1	100	91.266	ENSAMEG00000004092	CMSS1	88	91.266	Ailuropoda_melanoleuca
ENSFDAG00000012577	CMSS1	89	55.446	ENSACIG00000021854	cmss1	75	55.446	Amphilophus_citrinellus
ENSFDAG00000012577	CMSS1	89	65.347	ENSAOCG00000013361	cmss1	70	65.347	Amphiprion_ocellaris
ENSFDAG00000012577	CMSS1	89	65.347	ENSAPEG00000005829	cmss1	70	65.347	Amphiprion_percula
ENSFDAG00000012577	CMSS1	99	62.719	ENSATEG00000008209	cmss1	88	59.414	Anabas_testudineus
ENSFDAG00000012577	CMSS1	100	66.812	ENSAPLG00000010542	CMSS1	99	66.812	Anas_platyrhynchos
ENSFDAG00000012577	CMSS1	100	66.810	ENSACAG00000011065	CMSS1	85	66.810	Anolis_carolinensis
ENSFDAG00000012577	CMSS1	100	90.351	ENSANAG00000023565	CMSS1	87	90.351	Aotus_nancymaae
ENSFDAG00000012577	CMSS1	89	61.881	ENSACLG00000027294	cmss1	69	61.881	Astatotilapia_calliptera
ENSFDAG00000012577	CMSS1	88	55.000	ENSAMXG00000002046	cmss1	69	55.446	Astyanax_mexicanus
ENSFDAG00000012577	CMSS1	100	89.035	ENSBTAG00000013663	CMSS1	83	89.035	Bos_taurus
ENSFDAG00000012577	CMSS1	100	89.912	ENSCJAG00000000610	CMSS1	87	89.912	Callithrix_jacchus
ENSFDAG00000012577	CMSS1	100	92.105	ENSCAFG00000009230	CMSS1	83	92.105	Canis_familiaris
ENSFDAG00000012577	CMSS1	100	92.105	ENSCAFG00020009464	-	83	92.105	Canis_lupus_dingo
ENSFDAG00000012577	CMSS1	99	84.513	ENSCAFG00020024156	-	71	84.513	Canis_lupus_dingo
ENSFDAG00000012577	CMSS1	100	89.474	ENSCHIG00000013003	CMSS1	83	89.474	Capra_hircus
ENSFDAG00000012577	CMSS1	100	89.035	ENSTSYG00000009266	CMSS1	88	89.035	Carlito_syrichta
ENSFDAG00000012577	CMSS1	98	74.672	ENSCAPG00000013584	CMSS1	100	74.672	Cavia_aperea
ENSFDAG00000012577	CMSS1	100	93.860	ENSCPOG00000014680	CMSS1	82	93.860	Cavia_porcellus
ENSFDAG00000012577	CMSS1	100	90.789	ENSCCAG00000034685	CMSS1	87	90.789	Cebus_capucinus
ENSFDAG00000012577	CMSS1	100	91.228	ENSCATG00000031980	CMSS1	87	91.228	Cercocebus_atys
ENSFDAG00000012577	CMSS1	100	93.860	ENSCLAG00000011241	CMSS1	98	93.860	Chinchilla_lanigera
ENSFDAG00000012577	CMSS1	100	91.228	ENSCSAG00000006024	CMSS1	93	91.228	Chlorocebus_sabaeus
ENSFDAG00000012577	CMSS1	100	67.105	ENSCHOG00000012098	CMSS1	83	67.105	Choloepus_hoffmanni
ENSFDAG00000012577	CMSS1	86	40.500	ENSCING00000014848	-	100	41.711	Ciona_intestinalis
ENSFDAG00000012577	CMSS1	55	42.063	ENSCSAVG00000002309	-	99	42.063	Ciona_savignyi
ENSFDAG00000012577	CMSS1	100	90.789	ENSCANG00000031337	CMSS1	87	90.789	Colobus_angolensis_palliatus
ENSFDAG00000012577	CMSS1	100	82.895	ENSCGRG00001014305	Cmss1	82	82.895	Cricetulus_griseus_chok1gshd
ENSFDAG00000012577	CMSS1	100	83.333	ENSCGRG00000006722	Cmss1	89	83.333	Cricetulus_griseus_crigri
ENSFDAG00000012577	CMSS1	89	61.881	ENSCSEG00000004958	cmss1	69	61.881	Cynoglossus_semilaevis
ENSFDAG00000012577	CMSS1	89	61.386	ENSCVAG00000005039	cmss1	70	61.386	Cyprinodon_variegatus
ENSFDAG00000012577	CMSS1	89	53.960	ENSDARG00000112579	cmss1	79	50.862	Danio_rerio
ENSFDAG00000012577	CMSS1	100	88.158	ENSDNOG00000040418	CMSS1	83	88.158	Dasypus_novemcinctus
ENSFDAG00000012577	CMSS1	100	89.035	ENSDORG00000010461	Cmss1	82	89.035	Dipodomys_ordii
ENSFDAG00000012577	CMSS1	58	50.758	ENSEBUG00000002156	-	96	50.758	Eptatretus_burgeri
ENSFDAG00000012577	CMSS1	100	90.351	ENSEASG00005010966	CMSS1	99	90.411	Equus_asinus_asinus
ENSFDAG00000012577	CMSS1	100	90.351	ENSECAG00000015662	CMSS1	99	89.823	Equus_caballus
ENSFDAG00000012577	CMSS1	100	59.211	ENSEEUG00000007624	-	82	59.211	Erinaceus_europaeus
ENSFDAG00000012577	CMSS1	89	62.871	ENSELUG00000019459	cmss1	75	60.619	Esox_lucius
ENSFDAG00000012577	CMSS1	100	92.544	ENSFCAG00000044577	CMSS1	82	92.544	Felis_catus
ENSFDAG00000012577	CMSS1	100	64.474	ENSFALG00000005816	CMSS1	96	64.474	Ficedula_albicollis
ENSFDAG00000012577	CMSS1	99	61.905	ENSFHEG00000012008	cmss1	95	61.905	Fundulus_heteroclitus
ENSFDAG00000012577	CMSS1	89	61.386	ENSGMOG00000016729	cmss1	72	61.386	Gadus_morhua
ENSFDAG00000012577	CMSS1	100	67.544	ENSGALG00000015267	CMSS1	87	67.544	Gallus_gallus
ENSFDAG00000012577	CMSS1	91	64.251	ENSGAFG00000021217	cmss1	77	63.861	Gambusia_affinis
ENSFDAG00000012577	CMSS1	89	57.426	ENSGACG00000002798	cmss1	72	57.426	Gasterosteus_aculeatus
ENSFDAG00000012577	CMSS1	100	70.175	ENSGAGG00000019861	CMSS1	89	70.175	Gopherus_agassizii
ENSFDAG00000012577	CMSS1	100	91.228	ENSGGOG00000014125	CMSS1	87	91.228	Gorilla_gorilla
ENSFDAG00000012577	CMSS1	89	61.881	ENSHBUG00000008431	cmss1	71	61.881	Haplochromis_burtoni
ENSFDAG00000012577	CMSS1	99	95.595	ENSHGLG00000019481	CMSS1	93	95.595	Heterocephalus_glaber_female
ENSFDAG00000012577	CMSS1	99	95.595	ENSHGLG00100010314	CMSS1	91	95.595	Heterocephalus_glaber_male
ENSFDAG00000012577	CMSS1	96	65.297	ENSHCOG00000003222	cmss1	74	65.297	Hippocampus_comes
ENSFDAG00000012577	CMSS1	96	56.364	ENSIPUG00000011591	cmss1	76	56.364	Ictalurus_punctatus
ENSFDAG00000012577	CMSS1	100	91.228	ENSSTOG00000019366	CMSS1	82	91.228	Ictidomys_tridecemlineatus
ENSFDAG00000012577	CMSS1	100	85.965	ENSJJAG00000014894	Cmss1	90	88.614	Jaculus_jaculus
ENSFDAG00000012577	CMSS1	89	55.446	ENSKMAG00000002390	cmss1	81	55.446	Kryptolebias_marmoratus
ENSFDAG00000012577	CMSS1	89	58.621	ENSLBEG00000006298	cmss1	83	58.621	Labrus_bergylta
ENSFDAG00000012577	CMSS1	100	65.652	ENSLACG00000009293	CMSS1	100	65.652	Latimeria_chalumnae
ENSFDAG00000012577	CMSS1	99	57.709	ENSLOCG00000009391	cmss1	80	57.709	Lepisosteus_oculatus
ENSFDAG00000012577	CMSS1	100	88.596	ENSLAFG00000017509	CMSS1	100	88.596	Loxodonta_africana
ENSFDAG00000012577	CMSS1	100	91.667	ENSMFAG00000045006	CMSS1	87	91.667	Macaca_fascicularis
ENSFDAG00000012577	CMSS1	100	91.228	ENSMMUG00000002939	CMSS1	97	90.826	Macaca_mulatta
ENSFDAG00000012577	CMSS1	100	91.228	ENSMNEG00000031315	CMSS1	87	91.228	Macaca_nemestrina
ENSFDAG00000012577	CMSS1	100	90.789	ENSMLEG00000033660	CMSS1	87	90.789	Mandrillus_leucophaeus
ENSFDAG00000012577	CMSS1	89	64.356	ENSMAMG00000017176	cmss1	70	64.356	Mastacembelus_armatus
ENSFDAG00000012577	CMSS1	89	61.881	ENSMZEG00005021886	cmss1	69	61.881	Maylandia_zebra
ENSFDAG00000012577	CMSS1	100	66.667	ENSMGAG00000014360	CMSS1	100	66.667	Meleagris_gallopavo
ENSFDAG00000012577	CMSS1	100	58.079	ENSMAUG00000020609	Cmss1	78	58.079	Mesocricetus_auratus
ENSFDAG00000012577	CMSS1	100	91.667	ENSMICG00000048977	CMSS1	88	91.667	Microcebus_murinus
ENSFDAG00000012577	CMSS1	100	83.772	ENSMOCG00000021937	Cmss1	83	83.772	Microtus_ochrogaster
ENSFDAG00000012577	CMSS1	89	62.871	ENSMMOG00000019794	cmss1	84	62.871	Mola_mola
ENSFDAG00000012577	CMSS1	100	76.754	ENSMODG00000002275	CMSS1	86	76.754	Monodelphis_domestica
ENSFDAG00000012577	CMSS1	89	64.851	ENSMALG00000004250	cmss1	69	64.851	Monopterus_albus
ENSFDAG00000012577	CMSS1	100	82.533	MGP_CAROLIEiJ_G0020824	Cmss1	83	82.533	Mus_caroli
ENSFDAG00000012577	CMSS1	100	83.843	ENSMUSG00000022748	Cmss1	83	83.843	Mus_musculus
ENSFDAG00000012577	CMSS1	100	83.406	MGP_PahariEiJ_G0016524	Cmss1	83	83.406	Mus_pahari
ENSFDAG00000012577	CMSS1	100	83.843	MGP_SPRETEiJ_G0021724	Cmss1	83	83.843	Mus_spretus
ENSFDAG00000012577	CMSS1	99	92.952	ENSMPUG00000011324	CMSS1	88	92.952	Mustela_putorius_furo
ENSFDAG00000012577	CMSS1	100	89.130	ENSMLUG00000001131	CMSS1	87	89.130	Myotis_lucifugus
ENSFDAG00000012577	CMSS1	100	87.281	ENSNGAG00000020316	Cmss1	82	87.281	Nannospalax_galili
ENSFDAG00000012577	CMSS1	89	61.386	ENSNBRG00000003095	cmss1	69	61.386	Neolamprologus_brichardi
ENSFDAG00000012577	CMSS1	100	92.105	ENSNLEG00000034172	CMSS1	87	92.105	Nomascus_leucogenys
ENSFDAG00000012577	CMSS1	100	65.351	ENSMEUG00000014505	CMSS1	100	65.351	Notamacropus_eugenii
ENSFDAG00000012577	CMSS1	100	89.912	ENSOPRG00000002986	CMSS1	82	89.912	Ochotona_princeps
ENSFDAG00000012577	CMSS1	100	80.263	ENSODEG00000001853	-	81	80.263	Octodon_degus
ENSFDAG00000012577	CMSS1	100	91.228	ENSODEG00000005226	-	82	91.228	Octodon_degus
ENSFDAG00000012577	CMSS1	100	89.912	ENSODEG00000003558	-	84	89.912	Octodon_degus
ENSFDAG00000012577	CMSS1	96	81.651	ENSODEG00000009446	-	85	81.651	Octodon_degus
ENSFDAG00000012577	CMSS1	89	61.881	ENSONIG00000006678	cmss1	77	61.881	Oreochromis_niloticus
ENSFDAG00000012577	CMSS1	100	73.684	ENSOANG00000007529	CMSS1	99	73.276	Ornithorhynchus_anatinus
ENSFDAG00000012577	CMSS1	100	89.035	ENSOCUG00000025366	CMSS1	83	89.035	Oryctolagus_cuniculus
ENSFDAG00000012577	CMSS1	89	64.356	ENSORLG00000020340	cmss1	71	64.356	Oryzias_latipes
ENSFDAG00000012577	CMSS1	100	55.702	ENSORLG00020012235	cmss1	85	57.921	Oryzias_latipes_hni
ENSFDAG00000012577	CMSS1	89	56.931	ENSORLG00015015551	cmss1	75	58.049	Oryzias_latipes_hsok
ENSFDAG00000012577	CMSS1	89	64.851	ENSOMEG00000012555	cmss1	70	64.851	Oryzias_melastigma
ENSFDAG00000012577	CMSS1	100	90.789	ENSOGAG00000002045	CMSS1	100	90.789	Otolemur_garnettii
ENSFDAG00000012577	CMSS1	100	89.520	ENSOARG00000017899	CMSS1	79	89.520	Ovis_aries
ENSFDAG00000012577	CMSS1	100	91.228	ENSPPAG00000038515	CMSS1	84	91.228	Pan_paniscus
ENSFDAG00000012577	CMSS1	100	92.105	ENSPPRG00000016767	CMSS1	82	92.105	Panthera_pardus
ENSFDAG00000012577	CMSS1	100	91.667	ENSPTIG00000018274	CMSS1	82	91.667	Panthera_tigris_altaica
ENSFDAG00000012577	CMSS1	100	90.789	ENSPTRG00000015157	CMSS1	93	90.789	Pan_troglodytes
ENSFDAG00000012577	CMSS1	100	91.228	ENSPANG00000019980	CMSS1	91	91.228	Papio_anubis
ENSFDAG00000012577	CMSS1	99	61.739	ENSPKIG00000012609	cmss1	85	61.905	Paramormyrops_kingsleyae
ENSFDAG00000012577	CMSS1	100	70.614	ENSPSIG00000003849	CMSS1	99	70.614	Pelodiscus_sinensis
ENSFDAG00000012577	CMSS1	89	63.054	ENSPMGG00000010286	cmss1	87	63.054	Periophthalmus_magnuspinnatus
ENSFDAG00000012577	CMSS1	100	84.211	ENSPEMG00000016384	Cmss1	81	84.211	Peromyscus_maniculatus_bairdii
ENSFDAG00000012577	CMSS1	89	51.961	ENSPMAG00000001146	cmss1	99	52.475	Petromyzon_marinus
ENSFDAG00000012577	CMSS1	100	75.877	ENSPCIG00000015656	CMSS1	86	75.877	Phascolarctos_cinereus
ENSFDAG00000012577	CMSS1	89	63.366	ENSPFOG00000016849	cmss1	71	63.366	Poecilia_formosa
ENSFDAG00000012577	CMSS1	89	62.871	ENSPLAG00000008323	cmss1	71	62.871	Poecilia_latipinna
ENSFDAG00000012577	CMSS1	89	63.366	ENSPMEG00000021020	cmss1	70	63.366	Poecilia_mexicana
ENSFDAG00000012577	CMSS1	89	62.871	ENSPREG00000007618	cmss1	69	62.871	Poecilia_reticulata
ENSFDAG00000012577	CMSS1	100	90.789	ENSPPYG00000013606	CMSS1	84	90.789	Pongo_abelii
ENSFDAG00000012577	CMSS1	100	92.544	ENSPCOG00000020035	CMSS1	88	92.544	Propithecus_coquereli
ENSFDAG00000012577	CMSS1	100	76.754	ENSPVAG00000017031	CMSS1	82	76.754	Pteropus_vampyrus
ENSFDAG00000012577	CMSS1	77	63.636	ENSPNYG00000013428	cmss1	65	63.636	Pundamilia_nyererei
ENSFDAG00000012577	CMSS1	99	53.680	ENSPNAG00000007912	cmss1	79	54.113	Pygocentrus_nattereri
ENSFDAG00000012577	CMSS1	100	82.969	ENSRNOG00000027888	Cmss1	89	82.969	Rattus_norvegicus
ENSFDAG00000012577	CMSS1	100	90.789	ENSRBIG00000037931	CMSS1	87	90.789	Rhinopithecus_bieti
ENSFDAG00000012577	CMSS1	100	90.789	ENSRROG00000042910	CMSS1	87	90.789	Rhinopithecus_roxellana
ENSFDAG00000012577	CMSS1	100	89.912	ENSSBOG00000030980	CMSS1	87	89.912	Saimiri_boliviensis_boliviensis
ENSFDAG00000012577	CMSS1	100	77.632	ENSSHAG00000009321	CMSS1	90	77.632	Sarcophilus_harrisii
ENSFDAG00000012577	CMSS1	99	60.870	ENSSFOG00015001509	cmss1	80	61.472	Scleropages_formosus
ENSFDAG00000012577	CMSS1	89	62.871	ENSSMAG00000001653	cmss1	69	62.871	Scophthalmus_maximus
ENSFDAG00000012577	CMSS1	99	61.135	ENSSDUG00000007719	cmss1	80	60.699	Seriola_dumerili
ENSFDAG00000012577	CMSS1	91	65.217	ENSSLDG00000012300	cmss1	75	58.889	Seriola_lalandi_dorsalis
ENSFDAG00000012577	CMSS1	100	73.684	ENSSARG00000003584	CMSS1	81	73.684	Sorex_araneus
ENSFDAG00000012577	CMSS1	99	68.142	ENSSPUG00000003865	CMSS1	100	68.142	Sphenodon_punctatus
ENSFDAG00000012577	CMSS1	90	64.563	ENSSPAG00000019182	cmss1	63	64.356	Stegastes_partitus
ENSFDAG00000012577	CMSS1	100	91.667	ENSSSCG00000011970	CMSS1	82	91.667	Sus_scrofa
ENSFDAG00000012577	CMSS1	100	64.474	ENSTGUG00000013635	CMSS1	99	64.474	Taeniopygia_guttata
ENSFDAG00000012577	CMSS1	89	61.881	ENSTRUG00000015265	cmss1	72	61.881	Takifugu_rubripes
ENSFDAG00000012577	CMSS1	89	55.446	ENSTNIG00000002880	cmss1	73	55.446	Tetraodon_nigroviridis
ENSFDAG00000012577	CMSS1	100	67.982	ENSTBEG00000016722	CMSS1	81	67.982	Tupaia_belangeri
ENSFDAG00000012577	CMSS1	100	89.035	ENSTTRG00000001562	CMSS1	81	89.035	Tursiops_truncatus
ENSFDAG00000012577	CMSS1	100	92.105	ENSUAMG00000024209	CMSS1	100	91.928	Ursus_americanus
ENSFDAG00000012577	CMSS1	100	92.105	ENSUMAG00000001983	CMSS1	88	92.105	Ursus_maritimus
ENSFDAG00000012577	CMSS1	100	75.000	ENSVPAG00000000263	CMSS1	82	75.000	Vicugna_pacos
ENSFDAG00000012577	CMSS1	100	91.667	ENSVVUG00000021647	-	93	91.667	Vulpes_vulpes
ENSFDAG00000012577	CMSS1	99	89.823	ENSVVUG00000007776	-	89	89.823	Vulpes_vulpes
ENSFDAG00000012577	CMSS1	89	63.861	ENSXETG00000011858	cmss1	72	63.861	Xenopus_tropicalis
ENSFDAG00000012577	CMSS1	91	63.462	ENSXCOG00000018724	cmss1	69	63.366	Xiphophorus_couchianus
ENSFDAG00000012577	CMSS1	91	63.462	ENSXMAG00000011243	cmss1	76	63.366	Xiphophorus_maculatus