EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFDAG00000013872 (Gene tree)
Gene ID: 104863070
Gene Symbol: ZIC1
Alias: ZIC|ZNF201
Full Name: Zic family member 1
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 3272 bases
Position: chrKN122131.1:1235784-1239055
Accession: 104863070
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000004710	zf-C2H2	PF00096.26	2e-22	1	3
ENSFDAP00000004710	zf-C2H2	PF00096.26	2e-22	2	3
ENSFDAP00000004710	zf-C2H2	PF00096.26	2e-22	3	3
ENSFDAP00000004710	zf-met	PF12874.7	0.00023	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000018217	ZIC1-201	1246	XM_010625342	ENSFDAP00000004710	272 (aa)	XP_019063178	-

Gene Model

Click here to download ENSFDAG00000013872's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000013872's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFDAG00000013872	ZIC1	54	48.913	ENSFDAG00000008687	-	90	48.913
ENSFDAG00000013872	ZIC1	67	44.318	ENSFDAG00000010005	ZFP64	63	44.318
ENSFDAG00000013872	ZIC1	73	40.909	ENSFDAG00000015190	-	70	40.909
ENSFDAG00000013872	ZIC1	58	38.095	ENSFDAG00000019296	-	93	38.095
ENSFDAG00000013872	ZIC1	100	75.180	ENSFDAG00000014929	ZIC3	98	79.435
ENSFDAG00000013872	ZIC1	56	40.909	ENSFDAG00000006075	-	100	40.909
ENSFDAG00000013872	ZIC1	60	44.186	ENSFDAG00000020159	ZNF319	64	44.186
ENSFDAG00000013872	ZIC1	79	37.063	ENSFDAG00000021361	PRDM5	78	37.063
ENSFDAG00000013872	ZIC1	62	38.261	ENSFDAG00000008549	ZNF2	58	38.739
ENSFDAG00000013872	ZIC1	82	43.119	ENSFDAG00000008114	ZNF81	59	43.119
ENSFDAG00000013872	ZIC1	73	42.177	ENSFDAG00000009594	-	73	42.069
ENSFDAG00000013872	ZIC1	60	41.085	ENSFDAG00000015590	ZNF235	57	44.248
ENSFDAG00000013872	ZIC1	59	42.727	ENSFDAG00000005609	-	66	42.727
ENSFDAG00000013872	ZIC1	59	42.609	ENSFDAG00000010369	-	82	43.636
ENSFDAG00000013872	ZIC1	81	34.783	ENSFDAG00000016841	GTF3A	90	33.974
ENSFDAG00000013872	ZIC1	59	43.636	ENSFDAG00000020138	-	70	43.636
ENSFDAG00000013872	ZIC1	53	33.813	ENSFDAG00000008733	SCRT1	59	33.813
ENSFDAG00000013872	ZIC1	54	30.818	ENSFDAG00000008730	OVOL2	68	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000013872	ZIC1	100	99.265	ENSG00000152977	ZIC1	89	97.521	Homo_sapiens
ENSFDAG00000013872	ZIC1	100	87.500	ENSACIG00000018732	zic1	77	87.500	Amphilophus_citrinellus
ENSFDAG00000013872	ZIC1	100	64.590	ENSEBUG00000006709	zic1	65	66.118	Eptatretus_burgeri
ENSFDAG00000013872	ZIC1	100	64.590	ENSEBUG00000002180	zic1	65	66.118	Eptatretus_burgeri
ENSFDAG00000013872	ZIC1	100	91.544	ENSKMAG00000011689	zic1	78	88.971	Kryptolebias_marmoratus
ENSFDAG00000013872	ZIC1	89	79.752	ENSOANG00000007365	-	73	80.247	Ornithorhynchus_anatinus
ENSFDAG00000013872	ZIC1	100	87.500	ENSORLG00020012199	zic1	74	88.235	Oryzias_latipes_hni
ENSFDAG00000013872	ZIC1	65	96.067	ENSSHAG00000015025	ZIC1	54	95.028	Sarcophilus_harrisii