EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFDAG00000014092 (Gene tree)
Gene ID: 104875275
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Minus strand
Length: 16397 bases
Position: chrKN123370.1:278819-295215
Accession: 104875275
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000004967	zf-CCCH	PF00642.24	1.4e-20	1	2
ENSFDAP00000004967	zf-CCCH	PF00642.24	1.4e-20	2	2
ENSFDAP00000004969	zf-CCCH	PF00642.24	5.2e-16	1	2
ENSFDAP00000004969	zf-CCCH	PF00642.24	5.2e-16	2	2
ENSFDAP00000004969	zf-CCHC	PF00098.23	2.1e-06	1	1
ENSFDAP00000004967	zf-CCHC	PF00098.23	3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000018462	CPSF4-201	558	-	ENSFDAP00000004969	185 (aa)	-	-
ENSFDAT00000018466	CPSF4-202	732	XM_010642720	ENSFDAP00000004967	243 (aa)	XP_010641022	-

Gene Model

Click here to download ENSFDAG00000014092's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000014092's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000014092	CPSF4	100	98.354	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSFDAG00000014092	CPSF4	74	74.725	ENSAPOG00000004921	cpsf4	100	74.725	Acanthochromis_polyacanthus
ENSFDAG00000014092	CPSF4	100	99.177	ENSAMEG00000006252	CPSF4	90	99.177	Ailuropoda_melanoleuca
ENSFDAG00000014092	CPSF4	100	77.366	ENSACIG00000009248	cpsf4	89	75.309	Amphilophus_citrinellus
ENSFDAG00000014092	CPSF4	100	84.426	ENSAOCG00000019616	cpsf4	90	84.426	Amphiprion_ocellaris
ENSFDAG00000014092	CPSF4	100	84.426	ENSAPEG00000011679	cpsf4	90	84.426	Amphiprion_percula
ENSFDAG00000014092	CPSF4	100	83.333	ENSATEG00000007010	cpsf4	90	83.333	Anabas_testudineus
ENSFDAG00000014092	CPSF4	100	93.416	ENSACAG00000012941	CPSF4	80	93.416	Anolis_carolinensis
ENSFDAG00000014092	CPSF4	100	98.354	ENSANAG00000021360	CPSF4	90	98.354	Aotus_nancymaae
ENSFDAG00000014092	CPSF4	100	82.787	ENSACLG00000010374	cpsf4	90	82.787	Astatotilapia_calliptera
ENSFDAG00000014092	CPSF4	100	84.324	ENSAMXG00000031647	cpsf4	90	84.898	Astyanax_mexicanus
ENSFDAG00000014092	CPSF4	100	87.654	ENSBTAG00000002090	CPSF4	89	87.654	Bos_taurus
ENSFDAG00000014092	CPSF4	100	98.354	ENSCJAG00000015826	CPSF4	90	98.354	Callithrix_jacchus
ENSFDAG00000014092	CPSF4	100	98.765	ENSCAFG00000015036	CPSF4	90	98.765	Canis_familiaris
ENSFDAG00000014092	CPSF4	100	91.770	ENSCAFG00020014462	CPSF4	90	91.770	Canis_lupus_dingo
ENSFDAG00000014092	CPSF4	100	98.354	ENSCHIG00000014313	CPSF4	90	98.354	Capra_hircus
ENSFDAG00000014092	CPSF4	100	98.378	ENSTSYG00000005712	-	88	98.378	Carlito_syrichta
ENSFDAG00000014092	CPSF4	96	89.444	ENSTSYG00000008195	-	99	89.444	Carlito_syrichta
ENSFDAG00000014092	CPSF4	99	87.634	ENSTSYG00000014604	-	87	87.634	Carlito_syrichta
ENSFDAG00000014092	CPSF4	90	100.000	ENSCAPG00000013881	CPSF4	87	100.000	Cavia_aperea
ENSFDAG00000014092	CPSF4	100	98.919	ENSCPOG00000001783	CPSF4	88	98.919	Cavia_porcellus
ENSFDAG00000014092	CPSF4	100	98.354	ENSCCAG00000028291	CPSF4	90	98.354	Cebus_capucinus
ENSFDAG00000014092	CPSF4	100	98.354	ENSCATG00000038440	CPSF4	90	98.354	Cercocebus_atys
ENSFDAG00000014092	CPSF4	100	98.765	ENSCLAG00000007050	CPSF4	90	98.765	Chinchilla_lanigera
ENSFDAG00000014092	CPSF4	100	98.354	ENSCSAG00000017795	CPSF4	90	98.354	Chlorocebus_sabaeus
ENSFDAG00000014092	CPSF4	89	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSFDAG00000014092	CPSF4	57	84.783	ENSCPBG00000010269	-	84	84.173	Chrysemys_picta_bellii
ENSFDAG00000014092	CPSF4	96	54.043	ENSCING00000021080	-	87	54.043	Ciona_intestinalis
ENSFDAG00000014092	CPSF4	96	50.973	ENSCSAVG00000011469	-	88	50.588	Ciona_savignyi
ENSFDAG00000014092	CPSF4	100	98.354	ENSCANG00000019384	CPSF4	90	98.354	Colobus_angolensis_palliatus
ENSFDAG00000014092	CPSF4	100	98.919	ENSCGRG00001024184	Cpsf4	88	98.919	Cricetulus_griseus_chok1gshd
ENSFDAG00000014092	CPSF4	100	99.177	ENSCGRG00000013892	Cpsf4	90	99.177	Cricetulus_griseus_crigri
ENSFDAG00000014092	CPSF4	100	84.324	ENSCSEG00000019055	cpsf4	90	83.607	Cynoglossus_semilaevis
ENSFDAG00000014092	CPSF4	100	82.377	ENSCVAG00000016528	cpsf4	90	82.377	Cyprinodon_variegatus
ENSFDAG00000014092	CPSF4	100	83.673	ENSDARG00000020217	cpsf4	90	83.673	Danio_rerio
ENSFDAG00000014092	CPSF4	100	98.765	ENSDNOG00000006344	CPSF4	90	98.765	Dasypus_novemcinctus
ENSFDAG00000014092	CPSF4	89	99.539	ENSDORG00000000742	Cpsf4	100	99.539	Dipodomys_ordii
ENSFDAG00000014092	CPSF4	100	56.391	FBgn0015621	Clp	90	55.639	Drosophila_melanogaster
ENSFDAG00000014092	CPSF4	70	100.000	ENSETEG00000002608	CPSF4	60	100.000	Echinops_telfairi
ENSFDAG00000014092	CPSF4	99	65.975	ENSEBUG00000012552	cpsf4	88	65.975	Eptatretus_burgeri
ENSFDAG00000014092	CPSF4	100	88.889	ENSEASG00005002487	CPSF4	89	88.889	Equus_asinus_asinus
ENSFDAG00000014092	CPSF4	100	99.177	ENSECAG00000007525	CPSF4	90	99.177	Equus_caballus
ENSFDAG00000014092	CPSF4	78	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSFDAG00000014092	CPSF4	100	81.452	ENSELUG00000011481	cpsf4	90	79.032	Esox_lucius
ENSFDAG00000014092	CPSF4	100	99.177	ENSFCAG00000015070	CPSF4	90	99.177	Felis_catus
ENSFDAG00000014092	CPSF4	57	57.534	ENSFALG00000012906	-	84	57.534	Ficedula_albicollis
ENSFDAG00000014092	CPSF4	100	84.774	ENSFALG00000013799	CPSF4	89	83.128	Ficedula_albicollis
ENSFDAG00000014092	CPSF4	100	81.967	ENSFHEG00000010880	cpsf4	90	81.967	Fundulus_heteroclitus
ENSFDAG00000014092	CPSF4	100	75.918	ENSGMOG00000002330	cpsf4	90	74.286	Gadus_morhua
ENSFDAG00000014092	CPSF4	100	84.362	ENSGALG00000004714	CPSF4	89	83.128	Gallus_gallus
ENSFDAG00000014092	CPSF4	75	38.421	ENSGALG00000004441	-	92	36.842	Gallus_gallus
ENSFDAG00000014092	CPSF4	100	81.967	ENSGAFG00000010580	cpsf4	90	81.557	Gambusia_affinis
ENSFDAG00000014092	CPSF4	100	77.143	ENSGACG00000007792	cpsf4	90	75.918	Gasterosteus_aculeatus
ENSFDAG00000014092	CPSF4	100	94.650	ENSGAGG00000021835	CPSF4	90	94.650	Gopherus_agassizii
ENSFDAG00000014092	CPSF4	57	84.783	ENSGAGG00000020579	-	77	84.783	Gopherus_agassizii
ENSFDAG00000014092	CPSF4	100	98.354	ENSGGOG00000015131	CPSF4	90	98.354	Gorilla_gorilla
ENSFDAG00000014092	CPSF4	100	82.787	ENSHBUG00000013699	cpsf4	90	82.787	Haplochromis_burtoni
ENSFDAG00000014092	CPSF4	100	98.378	ENSHGLG00000017150	CPSF4	90	97.143	Heterocephalus_glaber_female
ENSFDAG00000014092	CPSF4	96	96.186	ENSHGLG00100009215	-	100	97.159	Heterocephalus_glaber_male
ENSFDAG00000014092	CPSF4	100	67.568	ENSHGLG00100017302	-	85	64.865	Heterocephalus_glaber_male
ENSFDAG00000014092	CPSF4	100	79.918	ENSHCOG00000004397	cpsf4	90	77.049	Hippocampus_comes
ENSFDAG00000014092	CPSF4	100	82.857	ENSIPUG00000017147	cpsf4	90	84.146	Ictalurus_punctatus
ENSFDAG00000014092	CPSF4	100	99.177	ENSSTOG00000001688	CPSF4	90	99.177	Ictidomys_tridecemlineatus
ENSFDAG00000014092	CPSF4	100	98.765	ENSJJAG00000019426	Cpsf4	90	98.765	Jaculus_jaculus
ENSFDAG00000014092	CPSF4	100	81.557	ENSKMAG00000015642	cpsf4	90	81.557	Kryptolebias_marmoratus
ENSFDAG00000014092	CPSF4	100	59.836	ENSLACG00000018470	-	89	59.836	Latimeria_chalumnae
ENSFDAG00000014092	CPSF4	100	88.115	ENSLACG00000010938	CPSF4	90	88.115	Latimeria_chalumnae
ENSFDAG00000014092	CPSF4	100	88.477	ENSLOCG00000004814	cpsf4	90	88.477	Lepisosteus_oculatus
ENSFDAG00000014092	CPSF4	100	98.765	ENSLAFG00000000159	CPSF4	100	98.758	Loxodonta_africana
ENSFDAG00000014092	CPSF4	100	98.354	ENSMFAG00000001462	CPSF4	90	98.354	Macaca_fascicularis
ENSFDAG00000014092	CPSF4	100	98.354	ENSMMUG00000019191	CPSF4	90	98.354	Macaca_mulatta
ENSFDAG00000014092	CPSF4	100	98.354	ENSMNEG00000032306	CPSF4	90	98.354	Macaca_nemestrina
ENSFDAG00000014092	CPSF4	100	98.354	ENSMLEG00000034721	CPSF4	90	98.354	Mandrillus_leucophaeus
ENSFDAG00000014092	CPSF4	100	82.787	ENSMAMG00000006244	cpsf4	90	82.186	Mastacembelus_armatus
ENSFDAG00000014092	CPSF4	100	82.787	ENSMZEG00005007515	cpsf4	90	82.787	Maylandia_zebra
ENSFDAG00000014092	CPSF4	97	84.255	ENSMGAG00000004235	CPSF4	100	82.979	Meleagris_gallopavo
ENSFDAG00000014092	CPSF4	100	99.177	ENSMAUG00000021253	Cpsf4	90	99.177	Mesocricetus_auratus
ENSFDAG00000014092	CPSF4	100	98.354	ENSMICG00000017429	CPSF4	90	98.354	Microcebus_murinus
ENSFDAG00000014092	CPSF4	100	99.177	ENSMOCG00000014901	Cpsf4	90	99.177	Microtus_ochrogaster
ENSFDAG00000014092	CPSF4	100	84.324	ENSMMOG00000001813	cpsf4	90	83.197	Mola_mola
ENSFDAG00000014092	CPSF4	100	96.296	ENSMODG00000001367	CPSF4	90	96.296	Monodelphis_domestica
ENSFDAG00000014092	CPSF4	100	81.557	ENSMALG00000012611	cpsf4	90	81.557	Monopterus_albus
ENSFDAG00000014092	CPSF4	100	99.177	MGP_CAROLIEiJ_G0028012	Cpsf4	90	99.177	Mus_caroli
ENSFDAG00000014092	CPSF4	100	99.177	ENSMUSG00000029625	Cpsf4	90	99.177	Mus_musculus
ENSFDAG00000014092	CPSF4	100	99.177	MGP_PahariEiJ_G0024581	Cpsf4	90	99.177	Mus_pahari
ENSFDAG00000014092	CPSF4	100	98.765	MGP_SPRETEiJ_G0029013	Cpsf4	90	98.765	Mus_spretus
ENSFDAG00000014092	CPSF4	100	99.177	ENSMPUG00000016508	CPSF4	90	99.177	Mustela_putorius_furo
ENSFDAG00000014092	CPSF4	97	88.085	ENSMLUG00000010980	CPSF4	100	88.085	Myotis_lucifugus
ENSFDAG00000014092	CPSF4	100	98.765	ENSNGAG00000001567	Cpsf4	90	98.765	Nannospalax_galili
ENSFDAG00000014092	CPSF4	100	82.787	ENSNBRG00000003943	cpsf4	97	82.787	Neolamprologus_brichardi
ENSFDAG00000014092	CPSF4	100	97.838	ENSNLEG00000011074	CPSF4	88	97.838	Nomascus_leucogenys
ENSFDAG00000014092	CPSF4	100	96.296	ENSMEUG00000006955	CPSF4	90	96.296	Notamacropus_eugenii
ENSFDAG00000014092	CPSF4	100	98.765	ENSOPRG00000013663	CPSF4	90	98.765	Ochotona_princeps
ENSFDAG00000014092	CPSF4	100	99.177	ENSODEG00000011181	-	90	99.177	Octodon_degus
ENSFDAG00000014092	CPSF4	98	77.419	ENSODEG00000018283	-	78	77.419	Octodon_degus
ENSFDAG00000014092	CPSF4	100	73.684	ENSODEG00000009779	-	91	73.684	Octodon_degus
ENSFDAG00000014092	CPSF4	100	82.787	ENSONIG00000008495	cpsf4	90	82.787	Oreochromis_niloticus
ENSFDAG00000014092	CPSF4	97	95.319	ENSOANG00000007729	CPSF4	100	95.319	Ornithorhynchus_anatinus
ENSFDAG00000014092	CPSF4	99	53.785	ENSOANG00000009568	-	90	50.996	Ornithorhynchus_anatinus
ENSFDAG00000014092	CPSF4	100	98.354	ENSOCUG00000002437	CPSF4	63	98.354	Oryctolagus_cuniculus
ENSFDAG00000014092	CPSF4	100	81.893	ENSORLG00000022798	cpsf4	90	81.893	Oryzias_latipes
ENSFDAG00000014092	CPSF4	100	81.893	ENSORLG00020008548	cpsf4	90	81.893	Oryzias_latipes_hni
ENSFDAG00000014092	CPSF4	100	81.893	ENSORLG00015019575	cpsf4	90	81.893	Oryzias_latipes_hsok
ENSFDAG00000014092	CPSF4	100	82.703	ENSOMEG00000005176	cpsf4	88	82.703	Oryzias_melastigma
ENSFDAG00000014092	CPSF4	100	98.765	ENSOGAG00000010884	CPSF4	90	98.765	Otolemur_garnettii
ENSFDAG00000014092	CPSF4	100	85.830	ENSOARG00000018668	CPSF4	90	85.020	Ovis_aries
ENSFDAG00000014092	CPSF4	100	97.942	ENSPPAG00000043355	CPSF4	90	97.942	Pan_paniscus
ENSFDAG00000014092	CPSF4	100	99.177	ENSPPRG00000003134	CPSF4	90	99.177	Panthera_pardus
ENSFDAG00000014092	CPSF4	99	98.760	ENSPTIG00000005604	CPSF4	90	98.760	Panthera_tigris_altaica
ENSFDAG00000014092	CPSF4	100	97.942	ENSPTRG00000019453	CPSF4	90	97.942	Pan_troglodytes
ENSFDAG00000014092	CPSF4	100	98.354	ENSPANG00000023123	CPSF4	90	98.354	Papio_anubis
ENSFDAG00000014092	CPSF4	100	83.065	ENSPKIG00000014278	cpsf4	91	83.065	Paramormyrops_kingsleyae
ENSFDAG00000014092	CPSF4	90	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSFDAG00000014092	CPSF4	89	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSFDAG00000014092	CPSF4	100	70.782	ENSPMGG00000017735	cpsf4	89	69.959	Periophthalmus_magnuspinnatus
ENSFDAG00000014092	CPSF4	100	99.177	ENSPEMG00000004508	Cpsf4	90	99.177	Peromyscus_maniculatus_bairdii
ENSFDAG00000014092	CPSF4	100	96.296	ENSPCIG00000024776	CPSF4	90	96.296	Phascolarctos_cinereus
ENSFDAG00000014092	CPSF4	100	81.967	ENSPFOG00000014912	cpsf4	90	81.557	Poecilia_formosa
ENSFDAG00000014092	CPSF4	100	73.663	ENSPLAG00000009599	cpsf4	89	73.663	Poecilia_latipinna
ENSFDAG00000014092	CPSF4	100	81.967	ENSPMEG00000009790	cpsf4	90	81.557	Poecilia_mexicana
ENSFDAG00000014092	CPSF4	100	80.738	ENSPREG00000018166	cpsf4	90	77.459	Poecilia_reticulata
ENSFDAG00000014092	CPSF4	96	98.291	ENSPPYG00000017378	CPSF4	100	98.291	Pongo_abelii
ENSFDAG00000014092	CPSF4	100	98.354	ENSPCAG00000001892	CPSF4	90	98.354	Procavia_capensis
ENSFDAG00000014092	CPSF4	100	98.765	ENSPCOG00000012771	CPSF4	90	98.765	Propithecus_coquereli
ENSFDAG00000014092	CPSF4	100	91.770	ENSPVAG00000007531	CPSF4	90	91.770	Pteropus_vampyrus
ENSFDAG00000014092	CPSF4	100	82.787	ENSPNYG00000018559	cpsf4	90	82.787	Pundamilia_nyererei
ENSFDAG00000014092	CPSF4	100	84.490	ENSPNAG00000003736	cpsf4	90	85.306	Pygocentrus_nattereri
ENSFDAG00000014092	CPSF4	100	98.919	ENSRNOG00000000985	Cpsf4	88	98.919	Rattus_norvegicus
ENSFDAG00000014092	CPSF4	96	99.145	ENSRBIG00000033886	CPSF4	100	99.145	Rhinopithecus_bieti
ENSFDAG00000014092	CPSF4	100	97.838	ENSRROG00000040431	CPSF4	88	97.838	Rhinopithecus_roxellana
ENSFDAG00000014092	CPSF4	100	98.354	ENSSBOG00000020493	CPSF4	90	98.354	Saimiri_boliviensis_boliviensis
ENSFDAG00000014092	CPSF4	100	96.296	ENSSHAG00000011533	CPSF4	90	96.296	Sarcophilus_harrisii
ENSFDAG00000014092	CPSF4	100	83.600	ENSSFOG00015007883	cpsf4	91	84.400	Scleropages_formosus
ENSFDAG00000014092	CPSF4	100	77.778	ENSSMAG00000006374	cpsf4	89	76.132	Scophthalmus_maximus
ENSFDAG00000014092	CPSF4	100	82.787	ENSSDUG00000018887	cpsf4	90	82.787	Seriola_dumerili
ENSFDAG00000014092	CPSF4	100	82.787	ENSSLDG00000019078	cpsf4	90	82.787	Seriola_lalandi_dorsalis
ENSFDAG00000014092	CPSF4	96	99.573	ENSSARG00000012416	CPSF4	100	99.573	Sorex_araneus
ENSFDAG00000014092	CPSF4	95	59.227	ENSSPUG00000014803	-	85	59.307	Sphenodon_punctatus
ENSFDAG00000014092	CPSF4	100	93.827	ENSSPUG00000003549	CPSF4	90	93.827	Sphenodon_punctatus
ENSFDAG00000014092	CPSF4	100	78.601	ENSSPAG00000006174	cpsf4	89	75.309	Stegastes_partitus
ENSFDAG00000014092	CPSF4	100	88.477	ENSSSCG00000026896	CPSF4	89	88.477	Sus_scrofa
ENSFDAG00000014092	CPSF4	100	83.673	ENSTGUG00000007552	CPSF4	89	82.041	Taeniopygia_guttata
ENSFDAG00000014092	CPSF4	100	79.757	ENSTRUG00000024220	cpsf4	90	79.757	Takifugu_rubripes
ENSFDAG00000014092	CPSF4	100	78.689	ENSTNIG00000006265	cpsf4	90	80.328	Tetraodon_nigroviridis
ENSFDAG00000014092	CPSF4	96	89.744	ENSTBEG00000011406	CPSF4	100	89.744	Tupaia_belangeri
ENSFDAG00000014092	CPSF4	100	75.309	ENSTTRG00000003007	CPSF4	90	75.309	Tursiops_truncatus
ENSFDAG00000014092	CPSF4	91	87.330	ENSUAMG00000008051	CPSF4	75	87.330	Ursus_americanus
ENSFDAG00000014092	CPSF4	100	88.477	ENSUMAG00000009474	CPSF4	89	88.477	Ursus_maritimus
ENSFDAG00000014092	CPSF4	100	88.477	ENSVVUG00000008824	CPSF4	89	88.477	Vulpes_vulpes
ENSFDAG00000014092	CPSF4	100	87.747	ENSXETG00000009892	cpsf4	91	87.747	Xenopus_tropicalis
ENSFDAG00000014092	CPSF4	98	60.996	ENSXETG00000004641	cpsf4l	89	60.669	Xenopus_tropicalis
ENSFDAG00000014092	CPSF4	100	83.243	ENSXCOG00000016040	cpsf4	90	81.557	Xiphophorus_couchianus
ENSFDAG00000014092	CPSF4	100	81.967	ENSXMAG00000024670	cpsf4	90	81.557	Xiphophorus_maculatus