EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFDAG00000014348 (Gene tree)
Gene ID: 104860241
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 93316 bases
Position: chrKN121943.1:28145-121460
Accession: 104860241
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000005288	Upf2	PF04050.14	1.4e-32	1	1
ENSFDAP00000005288	MIF4G	PF02854.19	4.5e-77	1	3
ENSFDAP00000005288	MIF4G	PF02854.19	4.5e-77	2	3
ENSFDAP00000005288	MIF4G	PF02854.19	4.5e-77	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000018738	UPF2-201	3810	XM_010621361	ENSFDAP00000005288	1269 (aa)	XP_010619663	UPI0005400C67

Gene Model

Click here to download ENSFDAG00000014348's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000014348's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000014348	UPF2	100	97.013	ENSG00000151461	UPF2	100	97.013	Homo_sapiens
ENSFDAG00000014348	UPF2	99	77.333	ENSAPOG00000015837	UPF2	100	77.255	Acanthochromis_polyacanthus
ENSFDAG00000014348	UPF2	100	97.640	ENSAMEG00000004586	UPF2	100	97.640	Ailuropoda_melanoleuca
ENSFDAG00000014348	UPF2	99	81.392	ENSACIG00000018078	UPF2	100	81.548	Amphilophus_citrinellus
ENSFDAG00000014348	UPF2	100	81.421	ENSAOCG00000016766	UPF2	100	81.577	Amphiprion_ocellaris
ENSFDAG00000014348	UPF2	100	81.421	ENSAPEG00000019084	UPF2	100	81.577	Amphiprion_percula
ENSFDAG00000014348	UPF2	100	81.323	ENSATEG00000021677	UPF2	99	81.450	Anabas_testudineus
ENSFDAG00000014348	UPF2	100	86.467	ENSAPLG00000010287	UPF2	90	91.043	Anas_platyrhynchos
ENSFDAG00000014348	UPF2	100	91.109	ENSACAG00000009259	UPF2	100	91.109	Anolis_carolinensis
ENSFDAG00000014348	UPF2	99	87.648	ENSANAG00000028451	UPF2	99	85.366	Aotus_nancymaae
ENSFDAG00000014348	UPF2	100	80.562	ENSACLG00000012696	UPF2	100	81.421	Astatotilapia_calliptera
ENSFDAG00000014348	UPF2	99	82.772	ENSAMXG00000013700	UPF2	99	81.911	Astyanax_mexicanus
ENSFDAG00000014348	UPF2	100	97.482	ENSBTAG00000000288	UPF2	100	97.482	Bos_taurus
ENSFDAG00000014348	UPF2	100	97.089	ENSCJAG00000020685	UPF2	100	97.089	Callithrix_jacchus
ENSFDAG00000014348	UPF2	100	97.561	ENSCAFG00000004839	UPF2	100	97.561	Canis_familiaris
ENSFDAG00000014348	UPF2	99	95.189	ENSCAFG00020005882	UPF2	100	95.189	Canis_lupus_dingo
ENSFDAG00000014348	UPF2	100	97.561	ENSCHIG00000020359	UPF2	100	97.561	Capra_hircus
ENSFDAG00000014348	UPF2	100	96.932	ENSTSYG00000000935	UPF2	100	96.932	Carlito_syrichta
ENSFDAG00000014348	UPF2	91	87.091	ENSCAPG00000016658	UPF2	95	87.177	Cavia_aperea
ENSFDAG00000014348	UPF2	99	96.907	ENSCPOG00000008809	UPF2	100	96.907	Cavia_porcellus
ENSFDAG00000014348	UPF2	100	91.503	ENSCCAG00000035991	UPF2	100	91.188	Cebus_capucinus
ENSFDAG00000014348	UPF2	100	97.170	ENSCATG00000032679	UPF2	100	97.170	Cercocebus_atys
ENSFDAG00000014348	UPF2	100	98.661	ENSCLAG00000011434	UPF2	100	98.661	Chinchilla_lanigera
ENSFDAG00000014348	UPF2	100	97.170	ENSCSAG00000013372	UPF2	100	97.170	Chlorocebus_sabaeus
ENSFDAG00000014348	UPF2	87	99.107	ENSCHOG00000000422	UPF2	89	99.107	Choloepus_hoffmanni
ENSFDAG00000014348	UPF2	99	92.508	ENSCPBG00000027823	UPF2	100	92.114	Chrysemys_picta_bellii
ENSFDAG00000014348	UPF2	79	48.970	ENSCSAVG00000007772	-	79	50.000	Ciona_savignyi
ENSFDAG00000014348	UPF2	99	90.383	ENSCANG00000040396	UPF2	100	90.236	Colobus_angolensis_palliatus
ENSFDAG00000014348	UPF2	100	97.638	ENSCGRG00001019347	Upf2	100	97.638	Cricetulus_griseus_chok1gshd
ENSFDAG00000014348	UPF2	100	97.638	ENSCGRG00000017993	Upf2	100	97.638	Cricetulus_griseus_crigri
ENSFDAG00000014348	UPF2	91	80.623	ENSCSEG00000003520	UPF2	80	78.947	Cynoglossus_semilaevis
ENSFDAG00000014348	UPF2	99	81.132	ENSCVAG00000006167	UPF2	100	80.818	Cyprinodon_variegatus
ENSFDAG00000014348	UPF2	100	97.246	ENSDNOG00000018160	UPF2	100	97.246	Dasypus_novemcinctus
ENSFDAG00000014348	UPF2	100	97.717	ENSDORG00000002478	Upf2	100	97.717	Dipodomys_ordii
ENSFDAG00000014348	UPF2	89	36.139	FBgn0029992	Upf2	90	39.040	Drosophila_melanogaster
ENSFDAG00000014348	UPF2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSFDAG00000014348	UPF2	69	68.657	ENSEBUG00000012448	-	87	71.711	Eptatretus_burgeri
ENSFDAG00000014348	UPF2	100	97.480	ENSEASG00005019274	UPF2	100	97.480	Equus_asinus_asinus
ENSFDAG00000014348	UPF2	100	97.559	ENSECAG00000017022	UPF2	100	97.559	Equus_caballus
ENSFDAG00000014348	UPF2	82	92.332	ENSEEUG00000007819	UPF2	82	92.013	Erinaceus_europaeus
ENSFDAG00000014348	UPF2	99	79.593	ENSELUG00000012014	UPF2	100	80.327	Esox_lucius
ENSFDAG00000014348	UPF2	100	98.895	ENSFCAG00000005785	UPF2	100	97.561	Felis_catus
ENSFDAG00000014348	UPF2	100	91.660	ENSFALG00000001889	UPF2	98	92.604	Ficedula_albicollis
ENSFDAG00000014348	UPF2	99	81.181	ENSFHEG00000009826	UPF2	100	80.866	Fundulus_heteroclitus
ENSFDAG00000014348	UPF2	91	83.463	ENSGMOG00000005557	UPF2	91	83.076	Gadus_morhua
ENSFDAG00000014348	UPF2	100	91.903	ENSGALG00000033772	UPF2	100	91.431	Gallus_gallus
ENSFDAG00000014348	UPF2	100	79.859	ENSGAFG00000020867	UPF2	100	80.406	Gambusia_affinis
ENSFDAG00000014348	UPF2	91	84.010	ENSGACG00000001080	UPF2	100	81.079	Gasterosteus_aculeatus
ENSFDAG00000014348	UPF2	100	92.211	ENSGAGG00000002700	UPF2	100	92.447	Gopherus_agassizii
ENSFDAG00000014348	UPF2	100	96.934	ENSGGOG00000001479	UPF2	100	96.934	Gorilla_gorilla
ENSFDAG00000014348	UPF2	100	80.406	ENSHBUG00000004249	UPF2	100	81.392	Haplochromis_burtoni
ENSFDAG00000014348	UPF2	100	98.583	ENSHGLG00000015176	-	100	98.583	Heterocephalus_glaber_female
ENSFDAG00000014348	UPF2	99	87.549	ENSHGLG00000003822	-	99	85.726	Heterocephalus_glaber_female
ENSFDAG00000014348	UPF2	99	95.501	ENSHGLG00100010036	UPF2	100	95.501	Heterocephalus_glaber_male
ENSFDAG00000014348	UPF2	100	79.487	ENSHCOG00000004025	UPF2	99	79.160	Hippocampus_comes
ENSFDAG00000014348	UPF2	100	81.109	ENSIPUG00000015524	UPF2	100	81.577	Ictalurus_punctatus
ENSFDAG00000014348	UPF2	100	98.189	ENSSTOG00000013075	UPF2	100	98.189	Ictidomys_tridecemlineatus
ENSFDAG00000014348	UPF2	100	96.535	ENSJJAG00000004913	Upf2	100	96.535	Jaculus_jaculus
ENSFDAG00000014348	UPF2	92	84.255	ENSKMAG00000001071	UPF2	100	80.643	Kryptolebias_marmoratus
ENSFDAG00000014348	UPF2	100	81.776	ENSLBEG00000016394	-	99	81.620	Labrus_bergylta
ENSFDAG00000014348	UPF2	80	81.121	ENSLBEG00000000728	-	93	81.219	Labrus_bergylta
ENSFDAG00000014348	UPF2	91	80.895	ENSLACG00000015945	UPF2	100	77.882	Latimeria_chalumnae
ENSFDAG00000014348	UPF2	99	84.240	ENSLOCG00000015698	UPF2	100	84.555	Lepisosteus_oculatus
ENSFDAG00000014348	UPF2	100	97.091	ENSMFAG00000043865	UPF2	100	97.091	Macaca_fascicularis
ENSFDAG00000014348	UPF2	100	97.091	ENSMMUG00000008241	UPF2	100	97.091	Macaca_mulatta
ENSFDAG00000014348	UPF2	81	95.512	ENSMNEG00000008062	UPF2	99	94.809	Macaca_nemestrina
ENSFDAG00000014348	UPF2	99	93.349	ENSMLEG00000036120	UPF2	100	97.101	Mandrillus_leucophaeus
ENSFDAG00000014348	UPF2	100	80.919	ENSMAMG00000018276	UPF2	100	80.997	Mastacembelus_armatus
ENSFDAG00000014348	UPF2	100	80.562	ENSMZEG00005021595	UPF2	100	81.421	Maylandia_zebra
ENSFDAG00000014348	UPF2	99	91.345	ENSMGAG00000004573	UPF2	99	90.873	Meleagris_gallopavo
ENSFDAG00000014348	UPF2	100	95.433	ENSMAUG00000016512	Upf2	100	95.433	Mesocricetus_auratus
ENSFDAG00000014348	UPF2	95	98.980	ENSMICG00000001716	UPF2	99	98.980	Microcebus_murinus
ENSFDAG00000014348	UPF2	100	96.927	ENSMOCG00000008263	Upf2	100	96.927	Microtus_ochrogaster
ENSFDAG00000014348	UPF2	99	79.059	ENSMMOG00000006528	UPF2	100	78.700	Mola_mola
ENSFDAG00000014348	UPF2	100	93.784	ENSMODG00000016794	UPF2	100	94.729	Monodelphis_domestica
ENSFDAG00000014348	UPF2	99	80.643	ENSMALG00000002663	UPF2	100	80.956	Monopterus_albus
ENSFDAG00000014348	UPF2	100	97.087	MGP_CAROLIEiJ_G0023157	Upf2	100	97.901	Mus_caroli
ENSFDAG00000014348	UPF2	100	96.929	ENSMUSG00000043241	Upf2	100	96.929	Mus_musculus
ENSFDAG00000014348	UPF2	100	96.929	MGP_PahariEiJ_G0019217	Upf2	100	96.947	Mus_pahari
ENSFDAG00000014348	UPF2	100	97.165	MGP_SPRETEiJ_G0024075	Upf2	100	97.328	Mus_spretus
ENSFDAG00000014348	UPF2	100	97.404	ENSMPUG00000001064	UPF2	100	97.404	Mustela_putorius_furo
ENSFDAG00000014348	UPF2	99	96.858	ENSMLUG00000000228	UPF2	100	96.858	Myotis_lucifugus
ENSFDAG00000014348	UPF2	100	80.562	ENSNBRG00000013629	UPF2	100	81.421	Neolamprologus_brichardi
ENSFDAG00000014348	UPF2	100	97.013	ENSNLEG00000012058	UPF2	100	97.013	Nomascus_leucogenys
ENSFDAG00000014348	UPF2	52	97.927	ENSMEUG00000002180	-	54	97.927	Notamacropus_eugenii
ENSFDAG00000014348	UPF2	82	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSFDAG00000014348	UPF2	100	98.425	ENSODEG00000001290	UPF2	100	98.425	Octodon_degus
ENSFDAG00000014348	UPF2	100	80.640	ENSONIG00000017991	UPF2	100	81.499	Oreochromis_niloticus
ENSFDAG00000014348	UPF2	99	96.706	ENSOCUG00000006230	UPF2	100	96.706	Oryctolagus_cuniculus
ENSFDAG00000014348	UPF2	100	81.089	ENSORLG00000017189	UPF2	100	80.530	Oryzias_latipes
ENSFDAG00000014348	UPF2	100	81.089	ENSORLG00020005969	UPF2	100	80.374	Oryzias_latipes_hni
ENSFDAG00000014348	UPF2	100	81.089	ENSORLG00015005713	UPF2	100	80.374	Oryzias_latipes_hsok
ENSFDAG00000014348	UPF2	99	77.301	ENSOMEG00000023420	UPF2	98	77.361	Oryzias_melastigma
ENSFDAG00000014348	UPF2	100	97.010	ENSOGAG00000005796	UPF2	100	97.010	Otolemur_garnettii
ENSFDAG00000014348	UPF2	100	97.408	ENSOARG00000014587	UPF2	100	97.408	Ovis_aries
ENSFDAG00000014348	UPF2	99	92.567	ENSPPAG00000037953	UPF2	100	92.514	Pan_paniscus
ENSFDAG00000014348	UPF2	100	97.561	ENSPPRG00000000690	UPF2	100	97.561	Panthera_pardus
ENSFDAG00000014348	UPF2	100	97.561	ENSPTIG00000008867	UPF2	100	97.561	Panthera_tigris_altaica
ENSFDAG00000014348	UPF2	100	96.934	ENSPTRG00000002291	UPF2	100	96.934	Pan_troglodytes
ENSFDAG00000014348	UPF2	100	97.091	ENSPANG00000023399	UPF2	100	97.091	Papio_anubis
ENSFDAG00000014348	UPF2	100	80.343	ENSPKIG00000025502	UPF2	100	80.109	Paramormyrops_kingsleyae
ENSFDAG00000014348	UPF2	59	90.969	ENSPSIG00000015158	UPF2	95	91.501	Pelodiscus_sinensis
ENSFDAG00000014348	UPF2	99	78.189	ENSPMGG00000005259	UPF2	100	79.324	Periophthalmus_magnuspinnatus
ENSFDAG00000014348	UPF2	93	93.294	ENSPEMG00000015731	Upf2	99	94.752	Peromyscus_maniculatus_bairdii
ENSFDAG00000014348	UPF2	100	93.706	ENSPCIG00000006656	UPF2	100	94.414	Phascolarctos_cinereus
ENSFDAG00000014348	UPF2	100	79.938	ENSPFOG00000017118	UPF2	100	80.718	Poecilia_formosa
ENSFDAG00000014348	UPF2	100	79.938	ENSPLAG00000005094	UPF2	100	80.718	Poecilia_latipinna
ENSFDAG00000014348	UPF2	100	79.938	ENSPMEG00000017009	UPF2	100	80.718	Poecilia_mexicana
ENSFDAG00000014348	UPF2	99	79.859	ENSPREG00000021880	UPF2	100	81.064	Poecilia_reticulata
ENSFDAG00000014348	UPF2	66	98.445	ENSPPYG00000002089	-	100	98.445	Pongo_abelii
ENSFDAG00000014348	UPF2	100	82.140	ENSPCAG00000000684	UPF2	100	82.376	Procavia_capensis
ENSFDAG00000014348	UPF2	99	94.479	ENSPCOG00000021656	UPF2	100	94.558	Propithecus_coquereli
ENSFDAG00000014348	UPF2	100	89.151	ENSPVAG00000017286	UPF2	100	89.387	Pteropus_vampyrus
ENSFDAG00000014348	UPF2	99	78.108	ENSPNYG00000017096	UPF2	100	78.968	Pundamilia_nyererei
ENSFDAG00000014348	UPF2	100	83.138	ENSPNAG00000009357	UPF2	100	82.436	Pygocentrus_nattereri
ENSFDAG00000014348	UPF2	99	90.888	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSFDAG00000014348	UPF2	99	96.215	ENSRBIG00000037780	UPF2	100	96.215	Rhinopithecus_bieti
ENSFDAG00000014348	UPF2	100	97.168	ENSRROG00000043547	UPF2	100	97.168	Rhinopithecus_roxellana
ENSFDAG00000014348	UPF2	100	97.323	ENSSBOG00000020012	UPF2	100	97.323	Saimiri_boliviensis_boliviensis
ENSFDAG00000014348	UPF2	100	80.499	ENSSFOG00015023788	upf2	100	82.293	Scleropages_formosus
ENSFDAG00000014348	UPF2	90	82.307	ENSSMAG00000007637	UPF2	100	78.682	Scophthalmus_maximus
ENSFDAG00000014348	UPF2	100	81.811	ENSSDUG00000017244	UPF2	99	81.577	Seriola_dumerili
ENSFDAG00000014348	UPF2	99	80.157	ENSSLDG00000016866	UPF2	82	82.776	Seriola_lalandi_dorsalis
ENSFDAG00000014348	UPF2	100	93.548	ENSSARG00000008615	UPF2	100	94.729	Sorex_araneus
ENSFDAG00000014348	UPF2	99	89.134	ENSSPUG00000014544	UPF2	99	89.134	Sphenodon_punctatus
ENSFDAG00000014348	UPF2	68	98.389	ENSSSCG00000011117	-	100	98.389	Sus_scrofa
ENSFDAG00000014348	UPF2	99	92.114	ENSTGUG00000002163	-	100	92.508	Taeniopygia_guttata
ENSFDAG00000014348	UPF2	100	81.187	ENSTRUG00000007519	UPF2	99	81.187	Takifugu_rubripes
ENSFDAG00000014348	UPF2	100	79.891	ENSTNIG00000004453	UPF2	100	79.501	Tetraodon_nigroviridis
ENSFDAG00000014348	UPF2	93	89.915	ENSTBEG00000012679	UPF2	93	89.153	Tupaia_belangeri
ENSFDAG00000014348	UPF2	100	97.244	ENSTTRG00000016388	UPF2	100	97.244	Tursiops_truncatus
ENSFDAG00000014348	UPF2	95	99.306	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSFDAG00000014348	UPF2	100	97.797	ENSUMAG00000012953	UPF2	95	97.797	Ursus_maritimus
ENSFDAG00000014348	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSFDAG00000014348	UPF2	100	97.640	ENSVVUG00000006166	UPF2	100	97.640	Vulpes_vulpes
ENSFDAG00000014348	UPF2	100	83.424	ENSXETG00000033103	UPF2	100	81.547	Xenopus_tropicalis
ENSFDAG00000014348	UPF2	99	79.593	ENSXCOG00000011604	UPF2	100	80.688	Xiphophorus_couchianus
ENSFDAG00000014348	UPF2	100	79.859	ENSXMAG00000017209	UPF2	100	80.640	Xiphophorus_maculatus