EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFDAG00000014816 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 12875 bases
Position: chrKN123998.1:756727-769601
Accession: 104849869
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000005920	UPF1_Zn_bind	PF09416.10	4.8e-75	1	1
ENSFDAP00000005917	UPF1_Zn_bind	PF09416.10	5.1e-75	1	1
ENSFDAP00000005923	UPF1_Zn_bind	PF09416.10	5.2e-75	1	1
ENSFDAP00000005920	ResIII	PF04851.15	1.8e-05	1	1
ENSFDAP00000005917	ResIII	PF04851.15	1.8e-05	1	1
ENSFDAP00000005923	ResIII	PF04851.15	1.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000019298	UPF1-202	3291	-	ENSFDAP00000005923	1096 (aa)	-	-
ENSFDAT00000019290	UPF1-201	3418	XM_010606481	ENSFDAP00000005920	1052 (aa)	XP_019060417	-
ENSFDAT00000029304	UPF1-203	3246	-	ENSFDAP00000005917	1081 (aa)	-	-

Gene Model

Click here to download ENSFDAG00000014816's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000014816's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000014816	UPF1	100	99.525	ENSG00000005007	UPF1	97	97.067	Homo_sapiens
ENSFDAG00000014816	UPF1	99	92.330	ENSAPOG00000023773	upf1	95	92.519	Acanthochromis_polyacanthus
ENSFDAG00000014816	UPF1	99	93.732	ENSAPOG00000010916	-	95	93.827	Acanthochromis_polyacanthus
ENSFDAG00000014816	UPF1	99	99.524	ENSAMEG00000011474	UPF1	97	97.151	Ailuropoda_melanoleuca
ENSFDAG00000014816	UPF1	98	93.726	ENSACIG00000010985	-	100	93.822	Amphilophus_citrinellus
ENSFDAG00000014816	UPF1	99	91.958	ENSACIG00000019949	upf1	95	92.519	Amphilophus_citrinellus
ENSFDAG00000014816	UPF1	99	93.732	ENSAOCG00000006352	-	100	91.329	Amphiprion_ocellaris
ENSFDAG00000014816	UPF1	99	91.817	ENSAOCG00000018519	upf1	95	92.409	Amphiprion_ocellaris
ENSFDAG00000014816	UPF1	99	93.732	ENSAPEG00000006292	-	100	91.329	Amphiprion_percula
ENSFDAG00000014816	UPF1	99	91.817	ENSAPEG00000016344	upf1	95	92.409	Amphiprion_percula
ENSFDAG00000014816	UPF1	99	89.843	ENSATEG00000017867	upf1	95	91.768	Anabas_testudineus
ENSFDAG00000014816	UPF1	99	93.732	ENSATEG00000016606	-	95	93.827	Anabas_testudineus
ENSFDAG00000014816	UPF1	99	98.097	ENSAPLG00000009175	UPF1	99	98.097	Anas_platyrhynchos
ENSFDAG00000014816	UPF1	100	98.194	ENSANAG00000024107	UPF1	98	96.037	Aotus_nancymaae
ENSFDAG00000014816	UPF1	99	91.769	ENSACLG00000007181	upf1	95	92.330	Astatotilapia_calliptera
ENSFDAG00000014816	UPF1	99	93.631	ENSACLG00000022630	-	95	93.631	Astatotilapia_calliptera
ENSFDAG00000014816	UPF1	99	94.112	ENSAMXG00000042187	upf1	95	94.682	Astyanax_mexicanus
ENSFDAG00000014816	UPF1	99	99.524	ENSBTAG00000020922	UPF1	96	97.957	Bos_taurus
ENSFDAG00000014816	UPF1	79	56.480	WBGene00004880	smg-2	94	50.048	Caenorhabditis_elegans
ENSFDAG00000014816	UPF1	100	99.525	ENSCJAG00000019627	UPF1	97	97.067	Callithrix_jacchus
ENSFDAG00000014816	UPF1	99	99.524	ENSCAFG00000014578	UPF1	97	96.975	Canis_familiaris
ENSFDAG00000014816	UPF1	99	98.478	ENSCAFG00020012347	UPF1	97	95.967	Canis_lupus_dingo
ENSFDAG00000014816	UPF1	99	99.524	ENSCHIG00000011018	UPF1	97	96.884	Capra_hircus
ENSFDAG00000014816	UPF1	100	99.335	ENSTSYG00000008877	UPF1	98	99.335	Carlito_syrichta
ENSFDAG00000014816	UPF1	100	98.859	ENSCAPG00000005758	UPF1	95	98.859	Cavia_aperea
ENSFDAG00000014816	UPF1	99	98.855	ENSCPOG00000025463	UPF1	96	97.381	Cavia_porcellus
ENSFDAG00000014816	UPF1	100	99.525	ENSCCAG00000032175	UPF1	97	97.335	Cebus_capucinus
ENSFDAG00000014816	UPF1	99	99.523	ENSCATG00000040306	UPF1	98	99.523	Cercocebus_atys
ENSFDAG00000014816	UPF1	100	99.905	ENSCLAG00000004037	UPF1	100	99.905	Chinchilla_lanigera
ENSFDAG00000014816	UPF1	100	98.479	ENSCSAG00000005276	UPF1	97	96.059	Chlorocebus_sabaeus
ENSFDAG00000014816	UPF1	99	97.154	ENSCPBG00000012513	UPF1	96	95.383	Chrysemys_picta_bellii
ENSFDAG00000014816	UPF1	74	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSFDAG00000014816	UPF1	99	73.321	ENSCSAVG00000006533	-	94	73.321	Ciona_savignyi
ENSFDAG00000014816	UPF1	100	99.525	ENSCANG00000029819	UPF1	98	99.525	Colobus_angolensis_palliatus
ENSFDAG00000014816	UPF1	100	98.099	ENSCGRG00001021067	Upf1	96	96.488	Cricetulus_griseus_chok1gshd
ENSFDAG00000014816	UPF1	100	99.144	ENSCGRG00000013480	Upf1	98	99.144	Cricetulus_griseus_crigri
ENSFDAG00000014816	UPF1	99	87.274	ENSCSEG00000017239	upf1	95	87.464	Cynoglossus_semilaevis
ENSFDAG00000014816	UPF1	99	93.726	ENSCSEG00000016159	-	95	93.726	Cynoglossus_semilaevis
ENSFDAG00000014816	UPF1	99	93.542	ENSCVAG00000010561	upf1	95	93.542	Cyprinodon_variegatus
ENSFDAG00000014816	UPF1	99	93.922	ENSDARG00000016302	upf1	95	94.492	Danio_rerio
ENSFDAG00000014816	UPF1	100	96.866	ENSDORG00000009984	Upf1	98	95.366	Dipodomys_ordii
ENSFDAG00000014816	UPF1	84	73.631	FBgn0030354	Upf1	80	69.959	Drosophila_melanogaster
ENSFDAG00000014816	UPF1	52	88.727	ENSEBUG00000010069	upf1	89	88.727	Eptatretus_burgeri
ENSFDAG00000014816	UPF1	99	98.573	ENSEASG00005006549	UPF1	97	96.232	Equus_asinus_asinus
ENSFDAG00000014816	UPF1	99	98.573	ENSECAG00000010639	UPF1	97	96.232	Equus_caballus
ENSFDAG00000014816	UPF1	99	91.493	ENSELUG00000020917	upf1	95	91.777	Esox_lucius
ENSFDAG00000014816	UPF1	99	92.257	ENSELUG00000012916	-	95	92.925	Esox_lucius
ENSFDAG00000014816	UPF1	99	99.429	ENSFCAG00000009757	UPF1	97	96.884	Felis_catus
ENSFDAG00000014816	UPF1	99	97.251	ENSFALG00000009312	UPF1	98	95.733	Ficedula_albicollis
ENSFDAG00000014816	UPF1	99	89.454	ENSFHEG00000006428	upf1	94	89.454	Fundulus_heteroclitus
ENSFDAG00000014816	UPF1	91	93.466	ENSFHEG00000016276	-	96	93.648	Fundulus_heteroclitus
ENSFDAG00000014816	UPF1	99	93.067	ENSGMOG00000007541	upf1	95	94.017	Gadus_morhua
ENSFDAG00000014816	UPF1	99	97.812	ENSGALG00000003220	UPF1	97	95.151	Gallus_gallus
ENSFDAG00000014816	UPF1	99	92.966	ENSGAFG00000004831	upf1	95	93.441	Gambusia_affinis
ENSFDAG00000014816	UPF1	67	94.043	ENSGAFG00000015443	-	85	94.043	Gambusia_affinis
ENSFDAG00000014816	UPF1	99	97.526	ENSGAGG00000022217	UPF1	96	95.741	Gopherus_agassizii
ENSFDAG00000014816	UPF1	100	98.479	ENSGGOG00000002608	UPF1	99	98.481	Gorilla_gorilla
ENSFDAG00000014816	UPF1	86	86.207	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSFDAG00000014816	UPF1	86	100.000	ENSHBUG00000008939	upf1	91	100.000	Haplochromis_burtoni
ENSFDAG00000014816	UPF1	100	99.525	ENSHGLG00000010900	UPF1	97	97.250	Heterocephalus_glaber_female
ENSFDAG00000014816	UPF1	100	97.814	ENSHGLG00100005904	UPF1	97	97.828	Heterocephalus_glaber_male
ENSFDAG00000014816	UPF1	99	92.681	ENSHCOG00000008918	upf1	100	92.823	Hippocampus_comes
ENSFDAG00000014816	UPF1	99	94.587	ENSIPUG00000005108	UPF1	95	95.062	Ictalurus_punctatus
ENSFDAG00000014816	UPF1	100	99.715	ENSSTOG00000009196	UPF1	97	97.610	Ictidomys_tridecemlineatus
ENSFDAG00000014816	UPF1	100	98.859	ENSJJAG00000023151	Upf1	97	96.780	Jaculus_jaculus
ENSFDAG00000014816	UPF1	99	93.827	ENSKMAG00000004962	upf1	95	93.827	Kryptolebias_marmoratus
ENSFDAG00000014816	UPF1	99	90.534	ENSLBEG00000014862	upf1	95	91.753	Labrus_bergylta
ENSFDAG00000014816	UPF1	99	93.542	ENSLBEG00000027848	-	95	93.637	Labrus_bergylta
ENSFDAG00000014816	UPF1	66	97.131	ENSLACG00000008482	UPF1	100	97.131	Latimeria_chalumnae
ENSFDAG00000014816	UPF1	99	96.198	ENSLOCG00000002072	upf1	95	96.198	Lepisosteus_oculatus
ENSFDAG00000014816	UPF1	99	98.953	ENSLAFG00000014963	UPF1	97	96.334	Loxodonta_africana
ENSFDAG00000014816	UPF1	100	99.525	ENSMFAG00000037748	UPF1	97	97.335	Macaca_fascicularis
ENSFDAG00000014816	UPF1	100	99.525	ENSMMUG00000023286	UPF1	97	97.426	Macaca_mulatta
ENSFDAG00000014816	UPF1	100	99.525	ENSMNEG00000000046	UPF1	97	97.335	Macaca_nemestrina
ENSFDAG00000014816	UPF1	100	99.525	ENSMLEG00000028404	UPF1	100	99.525	Mandrillus_leucophaeus
ENSFDAG00000014816	UPF1	99	90.739	ENSMAMG00000006229	upf1	95	91.862	Mastacembelus_armatus
ENSFDAG00000014816	UPF1	99	92.877	ENSMAMG00000006231	-	95	93.447	Mastacembelus_armatus
ENSFDAG00000014816	UPF1	99	90.748	ENSMZEG00005003489	upf1	95	92.011	Maylandia_zebra
ENSFDAG00000014816	UPF1	99	93.631	ENSMZEG00005016386	-	95	93.631	Maylandia_zebra
ENSFDAG00000014816	UPF1	99	97.624	ENSMGAG00000004745	UPF1	100	97.624	Meleagris_gallopavo
ENSFDAG00000014816	UPF1	100	99.144	ENSMAUG00000011398	Upf1	97	97.222	Mesocricetus_auratus
ENSFDAG00000014816	UPF1	100	98.574	ENSMICG00000001659	UPF1	97	96.150	Microcebus_murinus
ENSFDAG00000014816	UPF1	100	99.144	ENSMOCG00000005699	Upf1	97	96.697	Microtus_ochrogaster
ENSFDAG00000014816	UPF1	99	91.985	ENSMMOG00000007881	upf1	94	92.469	Mola_mola
ENSFDAG00000014816	UPF1	99	91.453	ENSMMOG00000007537	-	99	91.548	Mola_mola
ENSFDAG00000014816	UPF1	99	98.763	ENSMODG00000003689	UPF1	98	95.383	Monodelphis_domestica
ENSFDAG00000014816	UPF1	99	92.439	ENSMALG00000018100	-	95	92.533	Monopterus_albus
ENSFDAG00000014816	UPF1	99	91.817	ENSMALG00000000144	upf1	95	92.103	Monopterus_albus
ENSFDAG00000014816	UPF1	100	98.954	MGP_CAROLIEiJ_G0031142	Upf1	97	96.875	Mus_caroli
ENSFDAG00000014816	UPF1	100	98.954	ENSMUSG00000058301	Upf1	97	96.875	Mus_musculus
ENSFDAG00000014816	UPF1	100	98.954	MGP_PahariEiJ_G0021607	Upf1	97	96.875	Mus_pahari
ENSFDAG00000014816	UPF1	100	98.954	MGP_SPRETEiJ_G0032260	Upf1	97	96.875	Mus_spretus
ENSFDAG00000014816	UPF1	99	98.478	ENSMPUG00000015516	UPF1	97	95.967	Mustela_putorius_furo
ENSFDAG00000014816	UPF1	99	98.287	ENSMLUG00000012122	UPF1	95	96.753	Myotis_lucifugus
ENSFDAG00000014816	UPF1	100	99.049	ENSNGAG00000024107	Upf1	97	96.786	Nannospalax_galili
ENSFDAG00000014816	UPF1	99	89.972	ENSNBRG00000000670	upf1	95	90.530	Neolamprologus_brichardi
ENSFDAG00000014816	UPF1	99	92.788	ENSNBRG00000022069	-	100	92.788	Neolamprologus_brichardi
ENSFDAG00000014816	UPF1	100	93.726	ENSNLEG00000006062	UPF1	100	93.726	Nomascus_leucogenys
ENSFDAG00000014816	UPF1	82	93.725	ENSMEUG00000014146	-	80	93.725	Notamacropus_eugenii
ENSFDAG00000014816	UPF1	100	90.494	ENSOPRG00000014018	UPF1	100	90.494	Ochotona_princeps
ENSFDAG00000014816	UPF1	100	99.810	ENSODEG00000012426	UPF1	95	99.810	Octodon_degus
ENSFDAG00000014816	UPF1	99	91.028	ENSONIG00000010452	upf1	95	92.293	Oreochromis_niloticus
ENSFDAG00000014816	UPF1	99	93.726	ENSONIG00000012729	-	95	93.726	Oreochromis_niloticus
ENSFDAG00000014816	UPF1	99	98.291	ENSOANG00000004568	UPF1	97	95.872	Ornithorhynchus_anatinus
ENSFDAG00000014816	UPF1	99	93.447	ENSORLG00000008453	upf1	95	93.447	Oryzias_latipes
ENSFDAG00000014816	UPF1	99	93.447	ENSORLG00020014758	upf1	95	93.447	Oryzias_latipes_hni
ENSFDAG00000014816	UPF1	99	93.447	ENSORLG00015010165	upf1	100	89.595	Oryzias_latipes_hsok
ENSFDAG00000014816	UPF1	99	93.447	ENSOMEG00000003665	upf1	95	93.447	Oryzias_melastigma
ENSFDAG00000014816	UPF1	100	98.574	ENSOGAG00000012866	UPF1	97	96.150	Otolemur_garnettii
ENSFDAG00000014816	UPF1	96	99.112	ENSOARG00000010739	UPF1	93	99.112	Ovis_aries
ENSFDAG00000014816	UPF1	100	99.525	ENSPPAG00000043884	UPF1	96	99.525	Pan_paniscus
ENSFDAG00000014816	UPF1	99	99.429	ENSPPRG00000023470	UPF1	97	96.884	Panthera_pardus
ENSFDAG00000014816	UPF1	99	96.289	ENSPTIG00000010159	UPF1	99	96.289	Panthera_tigris_altaica
ENSFDAG00000014816	UPF1	100	99.525	ENSPTRG00000010721	UPF1	97	97.335	Pan_troglodytes
ENSFDAG00000014816	UPF1	100	99.525	ENSPANG00000008847	UPF1	97	97.335	Papio_anubis
ENSFDAG00000014816	UPF1	94	93.630	ENSPKIG00000006069	upf1	91	96.234	Paramormyrops_kingsleyae
ENSFDAG00000014816	UPF1	73	97.778	ENSPSIG00000009491	UPF1	100	97.778	Pelodiscus_sinensis
ENSFDAG00000014816	UPF1	99	90.142	ENSPMGG00000017327	upf1	95	90.350	Periophthalmus_magnuspinnatus
ENSFDAG00000014816	UPF1	100	99.144	ENSPEMG00000001085	Upf1	97	97.059	Peromyscus_maniculatus_bairdii
ENSFDAG00000014816	UPF1	99	88.973	ENSPMAG00000001206	upf1	96	87.616	Petromyzon_marinus
ENSFDAG00000014816	UPF1	99	97.716	ENSPCIG00000006156	UPF1	97	95.055	Phascolarctos_cinereus
ENSFDAG00000014816	UPF1	99	93.061	ENSPLAG00000016232	-	95	93.536	Poecilia_latipinna
ENSFDAG00000014816	UPF1	99	90.678	ENSPLAG00000018155	-	95	90.678	Poecilia_latipinna
ENSFDAG00000014816	UPF1	99	93.156	ENSPMEG00000016319	-	95	93.631	Poecilia_mexicana
ENSFDAG00000014816	UPF1	99	91.082	ENSPMEG00000011443	-	95	91.082	Poecilia_mexicana
ENSFDAG00000014816	UPF1	99	92.871	ENSPREG00000011247	-	95	93.346	Poecilia_reticulata
ENSFDAG00000014816	UPF1	99	91.174	ENSPREG00000009940	upf1	94	91.174	Poecilia_reticulata
ENSFDAG00000014816	UPF1	100	94.202	ENSPPYG00000009752	UPF1	95	92.937	Pongo_abelii
ENSFDAG00000014816	UPF1	70	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSFDAG00000014816	UPF1	100	99.620	ENSPCOG00000023813	UPF1	97	97.516	Propithecus_coquereli
ENSFDAG00000014816	UPF1	67	100.000	ENSPVAG00000003183	UPF1	65	100.000	Pteropus_vampyrus
ENSFDAG00000014816	UPF1	99	93.631	ENSPNYG00000016731	-	95	93.631	Pundamilia_nyererei
ENSFDAG00000014816	UPF1	99	90.748	ENSPNYG00000003694	upf1	95	92.011	Pundamilia_nyererei
ENSFDAG00000014816	UPF1	99	94.112	ENSPNAG00000025614	upf1	95	94.682	Pygocentrus_nattereri
ENSFDAG00000014816	UPF1	100	99.049	ENSRNOG00000020134	Upf1	97	96.967	Rattus_norvegicus
ENSFDAG00000014816	UPF1	100	97.148	ENSRBIG00000013894	UPF1	98	98.052	Rhinopithecus_bieti
ENSFDAG00000014816	UPF1	100	99.525	ENSRROG00000040935	UPF1	98	99.525	Rhinopithecus_roxellana
ENSFDAG00000014816	UPF1	81	54.670	YMR080C	NAM7	88	54.670	Saccharomyces_cerevisiae
ENSFDAG00000014816	UPF1	99	99.429	ENSSBOG00000023632	UPF1	99	97.232	Saimiri_boliviensis_boliviensis
ENSFDAG00000014816	UPF1	99	98.575	ENSSHAG00000010499	UPF1	100	98.575	Sarcophilus_harrisii
ENSFDAG00000014816	UPF1	99	96.198	ENSSFOG00015021095	upf1	99	96.103	Scleropages_formosus
ENSFDAG00000014816	UPF1	99	90.159	ENSSMAG00000005055	upf1	95	91.011	Scophthalmus_maximus
ENSFDAG00000014816	UPF1	99	93.732	ENSSMAG00000021018	-	95	93.827	Scophthalmus_maximus
ENSFDAG00000014816	UPF1	99	90.926	ENSSDUG00000013320	upf1	95	91.862	Seriola_dumerili
ENSFDAG00000014816	UPF1	99	93.922	ENSSDUG00000009629	-	95	94.017	Seriola_dumerili
ENSFDAG00000014816	UPF1	99	91.785	ENSSLDG00000020868	upf1	95	92.177	Seriola_lalandi_dorsalis
ENSFDAG00000014816	UPF1	99	93.922	ENSSLDG00000006878	-	95	94.017	Seriola_lalandi_dorsalis
ENSFDAG00000014816	UPF1	99	97.621	ENSSPUG00000010538	UPF1	96	96.022	Sphenodon_punctatus
ENSFDAG00000014816	UPF1	99	90.019	ENSSPAG00000000003	upf1	95	90.047	Stegastes_partitus
ENSFDAG00000014816	UPF1	99	93.726	ENSSPAG00000011521	-	95	93.726	Stegastes_partitus
ENSFDAG00000014816	UPF1	99	99.429	ENSSSCG00000039301	UPF1	99	98.382	Sus_scrofa
ENSFDAG00000014816	UPF1	82	91.425	ENSTGUG00000001057	UPF1	94	93.849	Taeniopygia_guttata
ENSFDAG00000014816	UPF1	99	92.776	ENSTRUG00000005131	-	95	92.871	Takifugu_rubripes
ENSFDAG00000014816	UPF1	99	91.817	ENSTRUG00000000150	upf1	95	91.817	Takifugu_rubripes
ENSFDAG00000014816	UPF1	99	94.577	ENSTTRG00000011544	UPF1	96	93.222	Tursiops_truncatus
ENSFDAG00000014816	UPF1	99	98.382	ENSUAMG00000007093	UPF1	97	95.875	Ursus_americanus
ENSFDAG00000014816	UPF1	99	99.429	ENSUMAG00000006652	UPF1	99	98.462	Ursus_maritimus
ENSFDAG00000014816	UPF1	99	98.478	ENSVVUG00000007797	UPF1	97	95.967	Vulpes_vulpes
ENSFDAG00000014816	UPF1	99	83.412	ENSXETG00000013602	upf1	94	82.772	Xenopus_tropicalis
ENSFDAG00000014816	UPF1	96	90.837	ENSXCOG00000015275	-	93	89.642	Xiphophorus_couchianus
ENSFDAG00000014816	UPF1	99	93.282	ENSXCOG00000005764	-	100	93.762	Xiphophorus_couchianus
ENSFDAG00000014816	UPF1	99	91.065	ENSXMAG00000001703	-	95	91.065	Xiphophorus_maculatus
ENSFDAG00000014816	UPF1	99	92.966	ENSXMAG00000002540	-	95	93.441	Xiphophorus_maculatus