EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFDAG00000015106 (Gene tree)
Gene ID: 104874875
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 234931 bases
Position: chrKN123351.1:932578-1167508
Accession: 104874875
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000006309	EST1	PF10374.9	1.6e-14	1	1
ENSFDAP00000006309	EST1_DNA_bind	PF10373.9	3.2e-59	1	1
ENSFDAP00000006310	EST1_DNA_bind	PF10373.9	2e-09	1	1
ENSFDAP00000006309	PIN_4	PF13638.6	2.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000019642	SMG6-201	714	-	ENSFDAP00000006310	238 (aa)	-	-
ENSFDAT00000019644	SMG6-202	4980	XM_010642131	ENSFDAP00000006309	1416 (aa)	XP_010640433	UPI00053F728E

Gene Model

Click here to download ENSFDAG00000015106's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000015106's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000015106	SMG6	100	91.543	ENSG00000070366	SMG6	100	97.065	Homo_sapiens
ENSFDAG00000015106	SMG6	91	55.895	ENSAPOG00000019448	smg6	74	54.680	Acanthochromis_polyacanthus
ENSFDAG00000015106	SMG6	100	92.178	ENSAMEG00000007632	SMG6	100	92.178	Ailuropoda_melanoleuca
ENSFDAG00000015106	SMG6	84	61.951	ENSACIG00000012997	smg6	98	49.182	Amphilophus_citrinellus
ENSFDAG00000015106	SMG6	91	55.459	ENSAOCG00000002630	smg6	74	54.766	Amphiprion_ocellaris
ENSFDAG00000015106	SMG6	91	55.895	ENSAPEG00000019101	smg6	74	54.844	Amphiprion_percula
ENSFDAG00000015106	SMG6	84	60.849	ENSATEG00000006483	smg6	73	54.454	Anabas_testudineus
ENSFDAG00000015106	SMG6	91	72.727	ENSACAG00000011783	SMG6	99	57.469	Anolis_carolinensis
ENSFDAG00000015106	SMG6	100	91.755	ENSANAG00000035760	SMG6	100	91.755	Aotus_nancymaae
ENSFDAG00000015106	SMG6	84	58.962	ENSACLG00000005288	smg6	86	52.762	Astatotilapia_calliptera
ENSFDAG00000015106	SMG6	84	60.577	ENSAMXG00000017326	smg6	99	50.174	Astyanax_mexicanus
ENSFDAG00000015106	SMG6	100	91.825	ENSBTAG00000000267	SMG6	100	91.825	Bos_taurus
ENSFDAG00000015106	SMG6	100	91.825	ENSCJAG00000001820	SMG6	100	91.825	Callithrix_jacchus
ENSFDAG00000015106	SMG6	100	91.966	ENSCAFG00000019260	SMG6	100	91.966	Canis_familiaris
ENSFDAG00000015106	SMG6	100	91.966	ENSCAFG00020009770	SMG6	100	91.966	Canis_lupus_dingo
ENSFDAG00000015106	SMG6	100	91.684	ENSCHIG00000021998	SMG6	100	91.684	Capra_hircus
ENSFDAG00000015106	SMG6	100	92.459	ENSTSYG00000003406	SMG6	100	97.065	Carlito_syrichta
ENSFDAG00000015106	SMG6	98	79.856	ENSCAPG00000016197	SMG6	99	85.164	Cavia_aperea
ENSFDAG00000015106	SMG6	100	93.944	ENSCPOG00000014878	SMG6	100	94.538	Cavia_porcellus
ENSFDAG00000015106	SMG6	100	91.896	ENSCCAG00000035801	SMG6	100	91.896	Cebus_capucinus
ENSFDAG00000015106	SMG6	100	91.755	ENSCATG00000031956	SMG6	100	91.755	Cercocebus_atys
ENSFDAG00000015106	SMG6	100	96.218	ENSCLAG00000006748	SMG6	100	96.218	Chinchilla_lanigera
ENSFDAG00000015106	SMG6	100	92.107	ENSCSAG00000013800	SMG6	100	92.107	Chlorocebus_sabaeus
ENSFDAG00000015106	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSFDAG00000015106	SMG6	100	77.143	ENSCPBG00000020369	SMG6	100	72.917	Chrysemys_picta_bellii
ENSFDAG00000015106	SMG6	68	34.682	ENSCING00000010099	-	99	34.990	Ciona_intestinalis
ENSFDAG00000015106	SMG6	98	91.865	ENSCANG00000031764	SMG6	100	96.477	Colobus_angolensis_palliatus
ENSFDAG00000015106	SMG6	55	88.348	ENSCGRG00001019595	Smg6	100	88.348	Cricetulus_griseus_chok1gshd
ENSFDAG00000015106	SMG6	98	85.364	ENSCGRG00000007782	Smg6	100	85.508	Cricetulus_griseus_crigri
ENSFDAG00000015106	SMG6	88	58.559	ENSCSEG00000012757	smg6	80	54.144	Cynoglossus_semilaevis
ENSFDAG00000015106	SMG6	84	59.242	ENSCVAG00000012789	smg6	86	53.364	Cyprinodon_variegatus
ENSFDAG00000015106	SMG6	99	54.398	ENSDARG00000100481	smg6	91	55.392	Danio_rerio
ENSFDAG00000015106	SMG6	100	91.825	ENSDNOG00000048283	SMG6	100	91.825	Dasypus_novemcinctus
ENSFDAG00000015106	SMG6	96	94.323	ENSDORG00000016614	Smg6	94	96.847	Dipodomys_ordii
ENSFDAG00000015106	SMG6	93	97.619	ENSETEG00000016790	SMG6	93	97.619	Echinops_telfairi
ENSFDAG00000015106	SMG6	82	52.525	ENSEBUG00000005059	smg6	68	48.369	Eptatretus_burgeri
ENSFDAG00000015106	SMG6	99	92.802	ENSEASG00005009318	SMG6	99	92.802	Equus_asinus_asinus
ENSFDAG00000015106	SMG6	99	92.590	ENSECAG00000006519	SMG6	99	92.590	Equus_caballus
ENSFDAG00000015106	SMG6	100	81.312	ENSEEUG00000003493	SMG6	100	81.312	Erinaceus_europaeus
ENSFDAG00000015106	SMG6	84	62.381	ENSELUG00000005934	smg6	67	56.088	Esox_lucius
ENSFDAG00000015106	SMG6	100	92.953	ENSFCAG00000028817	SMG6	100	92.953	Felis_catus
ENSFDAG00000015106	SMG6	100	76.327	ENSFALG00000006538	SMG6	100	71.571	Ficedula_albicollis
ENSFDAG00000015106	SMG6	94	53.074	ENSFHEG00000013282	smg6	86	53.499	Fundulus_heteroclitus
ENSFDAG00000015106	SMG6	83	57.416	ENSGMOG00000019077	smg6	58	68.224	Gadus_morhua
ENSFDAG00000015106	SMG6	100	76.735	ENSGALG00000003108	SMG6	98	71.834	Gallus_gallus
ENSFDAG00000015106	SMG6	84	57.277	ENSGAFG00000000379	smg6	74	53.660	Gambusia_affinis
ENSFDAG00000015106	SMG6	93	55.187	ENSGACG00000020521	smg6	99	53.402	Gasterosteus_aculeatus
ENSFDAG00000015106	SMG6	100	76.735	ENSGAGG00000025617	SMG6	100	72.475	Gopherus_agassizii
ENSFDAG00000015106	SMG6	100	92.459	ENSGGOG00000017156	SMG6	100	92.459	Gorilla_gorilla
ENSFDAG00000015106	SMG6	84	58.962	ENSHBUG00000021311	smg6	82	51.690	Haplochromis_burtoni
ENSFDAG00000015106	SMG6	100	96.639	ENSHGLG00000012882	SMG6	100	96.639	Heterocephalus_glaber_female
ENSFDAG00000015106	SMG6	100	96.639	ENSHGLG00100017815	SMG6	100	96.639	Heterocephalus_glaber_male
ENSFDAG00000015106	SMG6	86	60.185	ENSHCOG00000008761	smg6	96	53.475	Hippocampus_comes
ENSFDAG00000015106	SMG6	91	58.371	ENSIPUG00000012493	smg6	80	53.055	Ictalurus_punctatus
ENSFDAG00000015106	SMG6	100	96.218	ENSSTOG00000028127	SMG6	100	96.218	Ictidomys_tridecemlineatus
ENSFDAG00000015106	SMG6	79	89.196	ENSJJAG00000015367	Smg6	95	87.251	Jaculus_jaculus
ENSFDAG00000015106	SMG6	92	56.277	ENSKMAG00000000279	smg6	79	52.897	Kryptolebias_marmoratus
ENSFDAG00000015106	SMG6	81	58.049	ENSLBEG00000002184	smg6	86	48.449	Labrus_bergylta
ENSFDAG00000015106	SMG6	94	79.464	ENSLACG00000003276	SMG6	100	79.785	Latimeria_chalumnae
ENSFDAG00000015106	SMG6	55	57.301	ENSLACG00000000806	-	98	58.343	Latimeria_chalumnae
ENSFDAG00000015106	SMG6	95	64.348	ENSLOCG00000006448	smg6	99	54.501	Lepisosteus_oculatus
ENSFDAG00000015106	SMG6	100	92.037	ENSLAFG00000001261	SMG6	100	92.037	Loxodonta_africana
ENSFDAG00000015106	SMG6	100	92.319	ENSMFAG00000003394	SMG6	100	92.319	Macaca_fascicularis
ENSFDAG00000015106	SMG6	100	92.178	ENSMMUG00000023161	SMG6	100	92.178	Macaca_mulatta
ENSFDAG00000015106	SMG6	95	92.920	ENSMNEG00000044592	SMG6	100	87.412	Macaca_nemestrina
ENSFDAG00000015106	SMG6	93	96.617	ENSMLEG00000029353	SMG6	100	96.617	Mandrillus_leucophaeus
ENSFDAG00000015106	SMG6	84	60.952	ENSMAMG00000020119	smg6	79	54.793	Mastacembelus_armatus
ENSFDAG00000015106	SMG6	84	58.962	ENSMZEG00005024736	smg6	80	52.762	Maylandia_zebra
ENSFDAG00000015106	SMG6	73	65.385	ENSMGAG00000005401	-	99	65.385	Meleagris_gallopavo
ENSFDAG00000015106	SMG6	52	90.244	ENSMGAG00000017200	-	100	85.559	Meleagris_gallopavo
ENSFDAG00000015106	SMG6	97	93.913	ENSMAUG00000017203	-	99	93.913	Mesocricetus_auratus
ENSFDAG00000015106	SMG6	100	93.798	ENSMICG00000012913	SMG6	100	93.798	Microcebus_murinus
ENSFDAG00000015106	SMG6	99	93.220	ENSMOCG00000019924	-	99	93.220	Microtus_ochrogaster
ENSFDAG00000015106	SMG6	100	47.231	ENSMMOG00000010883	smg6	100	47.938	Mola_mola
ENSFDAG00000015106	SMG6	73	48.295	ENSMODG00000024460	-	99	41.487	Monodelphis_domestica
ENSFDAG00000015106	SMG6	73	46.111	ENSMODG00000024463	-	99	41.096	Monodelphis_domestica
ENSFDAG00000015106	SMG6	73	47.159	ENSMODG00000024410	-	99	40.705	Monodelphis_domestica
ENSFDAG00000015106	SMG6	96	90.830	ENSMODG00000010622	SMG6	100	85.443	Monodelphis_domestica
ENSFDAG00000015106	SMG6	81	45.128	ENSMODG00000024395	-	99	40.117	Monodelphis_domestica
ENSFDAG00000015106	SMG6	84	58.768	ENSMALG00000001106	smg6	73	55.081	Monopterus_albus
ENSFDAG00000015106	SMG6	100	93.697	MGP_CAROLIEiJ_G0016729	Smg6	100	93.697	Mus_caroli
ENSFDAG00000015106	SMG6	100	93.697	ENSMUSG00000038290	Smg6	100	93.697	Mus_musculus
ENSFDAG00000015106	SMG6	100	94.118	MGP_PahariEiJ_G0017866	Smg6	100	94.118	Mus_pahari
ENSFDAG00000015106	SMG6	100	93.697	MGP_SPRETEiJ_G0017572	Smg6	100	93.697	Mus_spretus
ENSFDAG00000015106	SMG6	100	92.248	ENSMPUG00000013046	SMG6	100	92.248	Mustela_putorius_furo
ENSFDAG00000015106	SMG6	100	92.459	ENSMLUG00000005739	SMG6	100	92.459	Myotis_lucifugus
ENSFDAG00000015106	SMG6	100	94.118	ENSNGAG00000007287	Smg6	100	94.118	Nannospalax_galili
ENSFDAG00000015106	SMG6	84	60.680	ENSNBRG00000009511	smg6	87	52.475	Neolamprologus_brichardi
ENSFDAG00000015106	SMG6	98	91.894	ENSNLEG00000017171	SMG6	100	97.065	Nomascus_leucogenys
ENSFDAG00000015106	SMG6	96	89.956	ENSMEUG00000015804	SMG6	100	81.322	Notamacropus_eugenii
ENSFDAG00000015106	SMG6	71	89.412	ENSOPRG00000000579	SMG6	85	98.421	Ochotona_princeps
ENSFDAG00000015106	SMG6	96	94.783	ENSODEG00000008038	SMG6	100	88.318	Octodon_degus
ENSFDAG00000015106	SMG6	100	50.665	ENSONIG00000005594	smg6	100	51.802	Oreochromis_niloticus
ENSFDAG00000015106	SMG6	100	92.254	ENSOCUG00000013018	SMG6	100	92.465	Oryctolagus_cuniculus
ENSFDAG00000015106	SMG6	82	58.852	ENSORLG00000003317	smg6	74	54.781	Oryzias_latipes
ENSFDAG00000015106	SMG6	82	58.373	ENSORLG00020015343	smg6	74	54.517	Oryzias_latipes_hni
ENSFDAG00000015106	SMG6	82	58.852	ENSORLG00015020454	smg6	74	54.781	Oryzias_latipes_hsok
ENSFDAG00000015106	SMG6	82	58.852	ENSOMEG00000010838	smg6	79	52.374	Oryzias_melastigma
ENSFDAG00000015106	SMG6	100	92.958	ENSOGAG00000004483	SMG6	100	92.958	Otolemur_garnettii
ENSFDAG00000015106	SMG6	100	89.930	ENSOARG00000015076	SMG6	100	91.480	Ovis_aries
ENSFDAG00000015106	SMG6	100	92.459	ENSPPAG00000043296	SMG6	100	92.459	Pan_paniscus
ENSFDAG00000015106	SMG6	100	93.023	ENSPPRG00000014581	SMG6	100	93.023	Panthera_pardus
ENSFDAG00000015106	SMG6	98	93.069	ENSPTIG00000008925	SMG6	100	97.456	Panthera_tigris_altaica
ENSFDAG00000015106	SMG6	100	92.459	ENSPTRG00000008544	SMG6	100	97.065	Pan_troglodytes
ENSFDAG00000015106	SMG6	100	92.037	ENSPANG00000024588	SMG6	100	92.037	Papio_anubis
ENSFDAG00000015106	SMG6	100	73.878	ENSPSIG00000006660	SMG6	96	71.104	Pelodiscus_sinensis
ENSFDAG00000015106	SMG6	98	60.719	ENSPMGG00000000844	smg6	100	60.719	Periophthalmus_magnuspinnatus
ENSFDAG00000015106	SMG6	97	95.652	ENSPEMG00000020707	Smg6	98	95.652	Peromyscus_maniculatus_bairdii
ENSFDAG00000015106	SMG6	100	50.700	ENSPFOG00000012035	smg6	100	50.434	Poecilia_formosa
ENSFDAG00000015106	SMG6	82	58.654	ENSPLAG00000017660	smg6	74	53.333	Poecilia_latipinna
ENSFDAG00000015106	SMG6	82	59.615	ENSPMEG00000000258	smg6	74	53.647	Poecilia_mexicana
ENSFDAG00000015106	SMG6	82	59.615	ENSPREG00000010066	smg6	74	53.271	Poecilia_reticulata
ENSFDAG00000015106	SMG6	100	87.131	ENSPPYG00000007790	SMG6	100	87.131	Pongo_abelii
ENSFDAG00000015106	SMG6	100	87.667	ENSPCAG00000000552	SMG6	100	87.667	Procavia_capensis
ENSFDAG00000015106	SMG6	100	93.658	ENSPCOG00000020925	SMG6	100	93.658	Propithecus_coquereli
ENSFDAG00000015106	SMG6	95	92.478	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSFDAG00000015106	SMG6	84	60.976	ENSPNYG00000024151	smg6	86	54.648	Pundamilia_nyererei
ENSFDAG00000015106	SMG6	87	61.290	ENSPNAG00000015480	smg6	76	63.375	Pygocentrus_nattereri
ENSFDAG00000015106	SMG6	100	91.614	ENSRNOG00000003041	Smg6	97	96.830	Rattus_norvegicus
ENSFDAG00000015106	SMG6	100	92.248	ENSRBIG00000024746	SMG6	100	92.248	Rhinopithecus_bieti
ENSFDAG00000015106	SMG6	100	92.319	ENSRROG00000030423	SMG6	100	96.086	Rhinopithecus_roxellana
ENSFDAG00000015106	SMG6	100	91.825	ENSSBOG00000022518	SMG6	100	90.204	Saimiri_boliviensis_boliviensis
ENSFDAG00000015106	SMG6	96	89.520	ENSSHAG00000010045	SMG6	98	84.864	Sarcophilus_harrisii
ENSFDAG00000015106	SMG6	79	40.933	ENSSHAG00000000380	-	99	38.933	Sarcophilus_harrisii
ENSFDAG00000015106	SMG6	91	60.944	ENSSFOG00015005436	smg6	70	57.121	Scleropages_formosus
ENSFDAG00000015106	SMG6	87	57.658	ENSSMAG00000019777	smg6	77	52.932	Scophthalmus_maximus
ENSFDAG00000015106	SMG6	84	58.491	ENSSDUG00000016412	smg6	78	52.402	Seriola_dumerili
ENSFDAG00000015106	SMG6	84	58.491	ENSSLDG00000020747	smg6	81	51.415	Seriola_lalandi_dorsalis
ENSFDAG00000015106	SMG6	100	76.423	ENSSPUG00000007152	SMG6	99	69.295	Sphenodon_punctatus
ENSFDAG00000015106	SMG6	91	56.140	ENSSPAG00000015633	smg6	74	54.382	Stegastes_partitus
ENSFDAG00000015106	SMG6	100	91.549	ENSSSCG00000017826	SMG6	100	91.549	Sus_scrofa
ENSFDAG00000015106	SMG6	100	77.959	ENSTGUG00000005836	SMG6	100	72.222	Taeniopygia_guttata
ENSFDAG00000015106	SMG6	100	47.781	ENSTRUG00000000358	smg6	100	48.034	Takifugu_rubripes
ENSFDAG00000015106	SMG6	100	49.373	ENSTNIG00000016164	smg6	100	49.736	Tetraodon_nigroviridis
ENSFDAG00000015106	SMG6	96	97.794	ENSTBEG00000011424	SMG6	100	88.161	Tupaia_belangeri
ENSFDAG00000015106	SMG6	95	92.920	ENSTTRG00000001175	SMG6	91	91.212	Tursiops_truncatus
ENSFDAG00000015106	SMG6	100	92.264	ENSUAMG00000025152	SMG6	100	91.715	Ursus_americanus
ENSFDAG00000015106	SMG6	98	92.563	ENSUMAG00000009306	SMG6	100	92.563	Ursus_maritimus
ENSFDAG00000015106	SMG6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
ENSFDAG00000015106	SMG6	100	91.825	ENSVVUG00000021727	SMG6	100	91.825	Vulpes_vulpes
ENSFDAG00000015106	SMG6	98	59.423	ENSXETG00000023799	SMG6	100	59.129	Xenopus_tropicalis
ENSFDAG00000015106	SMG6	82	61.881	ENSXCOG00000009867	smg6	74	54.589	Xiphophorus_couchianus
ENSFDAG00000015106	SMG6	94	53.762	ENSXMAG00000010321	smg6	85	53.535	Xiphophorus_maculatus