EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFDAG00000016060 (Gene tree)
Gene ID: 104866486
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 13606 bases
Position: chrKN122397.1:6083346-6096951
Accession: 104866486
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000007561	CPSF_A	PF03178.15	1.9e-92	1	1
ENSFDAP00000007556	CPSF_A	PF03178.15	2.6e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000020753	CPSF1-202	4591	XM_010630510	ENSFDAP00000007561	1441 (aa)	XP_010628812	A0A091DK29
ENSFDAT00000020750	CPSF1-201	4323	XM_010630512	ENSFDAP00000007556	1440 (aa)	XP_010628814	-

Gene Model

Click here to download ENSFDAG00000016060's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000016060's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000016060	CPSF1	100	96.674	ENSG00000071894	CPSF1	100	96.674	Homo_sapiens
ENSFDAG00000016060	CPSF1	100	78.296	ENSAPOG00000019621	cpsf1	100	78.431	Acanthochromis_polyacanthus
ENSFDAG00000016060	CPSF1	97	95.068	ENSAMEG00000005557	CPSF1	100	95.068	Ailuropoda_melanoleuca
ENSFDAG00000016060	CPSF1	100	78.878	ENSACIG00000006112	cpsf1	100	79.155	Amphilophus_citrinellus
ENSFDAG00000016060	CPSF1	100	79.793	ENSAOCG00000007120	cpsf1	100	80.000	Amphiprion_ocellaris
ENSFDAG00000016060	CPSF1	100	80.152	ENSAPEG00000005755	cpsf1	100	80.454	Amphiprion_percula
ENSFDAG00000016060	CPSF1	100	78.205	ENSATEG00000011097	cpsf1	100	78.543	Anabas_testudineus
ENSFDAG00000016060	CPSF1	93	81.683	ENSACAG00000009655	CPSF1	100	81.683	Anolis_carolinensis
ENSFDAG00000016060	CPSF1	100	96.671	ENSANAG00000036514	CPSF1	100	96.671	Aotus_nancymaae
ENSFDAG00000016060	CPSF1	100	77.824	ENSACLG00000012231	cpsf1	99	79.225	Astatotilapia_calliptera
ENSFDAG00000016060	CPSF1	100	74.187	ENSAMXG00000008485	cpsf1	100	73.356	Astyanax_mexicanus
ENSFDAG00000016060	CPSF1	100	94.622	ENSBTAG00000008355	CPSF1	100	95.029	Bos_taurus
ENSFDAG00000016060	CPSF1	100	31.824	WBGene00022301	cpsf-1	100	40.449	Caenorhabditis_elegans
ENSFDAG00000016060	CPSF1	100	96.671	ENSCJAG00000021421	CPSF1	100	96.671	Callithrix_jacchus
ENSFDAG00000016060	CPSF1	97	96.495	ENSCAFG00000001600	CPSF1	100	96.838	Canis_familiaris
ENSFDAG00000016060	CPSF1	100	96.676	ENSCAFG00020020821	CPSF1	100	96.676	Canis_lupus_dingo
ENSFDAG00000016060	CPSF1	100	91.250	ENSCHIG00000015833	CPSF1	100	91.250	Capra_hircus
ENSFDAG00000016060	CPSF1	100	97.503	ENSTSYG00000028560	CPSF1	100	97.503	Carlito_syrichta
ENSFDAG00000016060	CPSF1	97	97.776	ENSCAPG00000014921	CPSF1	99	97.776	Cavia_aperea
ENSFDAG00000016060	CPSF1	100	97.365	ENSCPOG00000011448	CPSF1	100	97.365	Cavia_porcellus
ENSFDAG00000016060	CPSF1	100	96.810	ENSCCAG00000037658	CPSF1	100	96.810	Cebus_capucinus
ENSFDAG00000016060	CPSF1	100	96.533	ENSCATG00000037234	CPSF1	99	97.612	Cercocebus_atys
ENSFDAG00000016060	CPSF1	100	99.306	ENSCLAG00000012166	CPSF1	100	99.306	Chinchilla_lanigera
ENSFDAG00000016060	CPSF1	100	96.671	ENSCSAG00000008502	CPSF1	100	96.671	Chlorocebus_sabaeus
ENSFDAG00000016060	CPSF1	99	87.815	ENSCPBG00000018910	CPSF1	96	87.815	Chrysemys_picta_bellii
ENSFDAG00000016060	CPSF1	96	48.637	ENSCING00000000514	-	100	48.565	Ciona_intestinalis
ENSFDAG00000016060	CPSF1	99	48.591	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSFDAG00000016060	CPSF1	99	91.049	ENSCANG00000032760	CPSF1	99	91.049	Colobus_angolensis_palliatus
ENSFDAG00000016060	CPSF1	100	97.294	ENSCGRG00001016344	Cpsf1	100	97.294	Cricetulus_griseus_chok1gshd
ENSFDAG00000016060	CPSF1	100	95.142	ENSCGRG00000003118	Cpsf1	100	95.142	Cricetulus_griseus_crigri
ENSFDAG00000016060	CPSF1	100	77.893	ENSCSEG00000013464	cpsf1	100	78.101	Cynoglossus_semilaevis
ENSFDAG00000016060	CPSF1	85	77.133	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSFDAG00000016060	CPSF1	100	79.904	ENSDARG00000034178	cpsf1	100	79.972	Danio_rerio
ENSFDAG00000016060	CPSF1	57	96.232	ENSDNOG00000043654	CPSF1	94	96.232	Dasypus_novemcinctus
ENSFDAG00000016060	CPSF1	97	96.628	ENSDORG00000006278	Cpsf1	99	96.965	Dipodomys_ordii
ENSFDAG00000016060	CPSF1	100	44.923	FBgn0024698	Cpsf160	100	44.966	Drosophila_melanogaster
ENSFDAG00000016060	CPSF1	80	97.987	ENSETEG00000006022	CPSF1	83	97.987	Echinops_telfairi
ENSFDAG00000016060	CPSF1	100	97.091	ENSEASG00005010774	CPSF1	100	97.091	Equus_asinus_asinus
ENSFDAG00000016060	CPSF1	100	97.161	ENSECAG00000022209	CPSF1	100	97.161	Equus_caballus
ENSFDAG00000016060	CPSF1	100	95.017	ENSEEUG00000000471	CPSF1	100	95.017	Erinaceus_europaeus
ENSFDAG00000016060	CPSF1	100	78.410	ENSELUG00000012271	cpsf1	100	78.615	Esox_lucius
ENSFDAG00000016060	CPSF1	100	77.066	ENSFHEG00000016801	cpsf1	100	77.135	Fundulus_heteroclitus
ENSFDAG00000016060	CPSF1	100	78.291	ENSGMOG00000000796	cpsf1	100	78.498	Gadus_morhua
ENSFDAG00000016060	CPSF1	95	83.929	ENSGAFG00000018890	cpsf1	100	83.929	Gambusia_affinis
ENSFDAG00000016060	CPSF1	100	79.020	ENSGACG00000008703	cpsf1	100	79.009	Gasterosteus_aculeatus
ENSFDAG00000016060	CPSF1	100	84.083	ENSGAGG00000004276	CPSF1	98	87.825	Gopherus_agassizii
ENSFDAG00000016060	CPSF1	100	96.600	ENSGGOG00000016185	CPSF1	100	96.600	Gorilla_gorilla
ENSFDAG00000016060	CPSF1	100	80.055	ENSHBUG00000018900	cpsf1	100	80.194	Haplochromis_burtoni
ENSFDAG00000016060	CPSF1	100	99.375	ENSHGLG00000016139	CPSF1	100	99.375	Heterocephalus_glaber_female
ENSFDAG00000016060	CPSF1	100	99.306	ENSHGLG00100009750	CPSF1	100	99.306	Heterocephalus_glaber_male
ENSFDAG00000016060	CPSF1	100	77.273	ENSHCOG00000018509	cpsf1	100	77.393	Hippocampus_comes
ENSFDAG00000016060	CPSF1	100	76.511	ENSIPUG00000011259	cpsf1	100	76.511	Ictalurus_punctatus
ENSFDAG00000016060	CPSF1	97	97.069	ENSSTOG00000009957	CPSF1	99	97.069	Ictidomys_tridecemlineatus
ENSFDAG00000016060	CPSF1	100	97.155	ENSJJAG00000023002	Cpsf1	100	97.155	Jaculus_jaculus
ENSFDAG00000016060	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	99	85.580	Kryptolebias_marmoratus
ENSFDAG00000016060	CPSF1	100	77.236	ENSLBEG00000003601	cpsf1	100	77.710	Labrus_bergylta
ENSFDAG00000016060	CPSF1	88	81.731	ENSLACG00000000233	CPSF1	100	68.107	Latimeria_chalumnae
ENSFDAG00000016060	CPSF1	100	78.177	ENSLOCG00000008484	cpsf1	100	78.522	Lepisosteus_oculatus
ENSFDAG00000016060	CPSF1	97	95.419	ENSLAFG00000022601	CPSF1	100	95.419	Loxodonta_africana
ENSFDAG00000016060	CPSF1	100	96.533	ENSMFAG00000037013	CPSF1	100	96.533	Macaca_fascicularis
ENSFDAG00000016060	CPSF1	100	96.602	ENSMMUG00000007380	CPSF1	100	96.602	Macaca_mulatta
ENSFDAG00000016060	CPSF1	97	96.557	ENSMNEG00000043564	CPSF1	100	96.557	Macaca_nemestrina
ENSFDAG00000016060	CPSF1	100	96.533	ENSMLEG00000043010	CPSF1	100	96.533	Mandrillus_leucophaeus
ENSFDAG00000016060	CPSF1	100	78.634	ENSMAMG00000003803	cpsf1	100	78.702	Mastacembelus_armatus
ENSFDAG00000016060	CPSF1	100	77.963	ENSMZEG00005001168	cpsf1	100	78.101	Maylandia_zebra
ENSFDAG00000016060	CPSF1	100	97.155	ENSMAUG00000003601	Cpsf1	100	97.155	Mesocricetus_auratus
ENSFDAG00000016060	CPSF1	100	97.085	ENSMICG00000015767	CPSF1	100	97.085	Microcebus_murinus
ENSFDAG00000016060	CPSF1	100	97.224	ENSMOCG00000022758	Cpsf1	100	97.224	Microtus_ochrogaster
ENSFDAG00000016060	CPSF1	100	79.239	ENSMMOG00000021245	cpsf1	100	79.377	Mola_mola
ENSFDAG00000016060	CPSF1	100	93.237	ENSMODG00000010755	CPSF1	100	93.237	Monodelphis_domestica
ENSFDAG00000016060	CPSF1	100	78.064	ENSMALG00000020545	cpsf1	100	78.199	Monopterus_albus
ENSFDAG00000016060	CPSF1	100	97.710	MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.710	Mus_caroli
ENSFDAG00000016060	CPSF1	100	97.641	ENSMUSG00000034022	Cpsf1	100	97.641	Mus_musculus
ENSFDAG00000016060	CPSF1	100	97.641	MGP_PahariEiJ_G0019946	Cpsf1	100	97.641	Mus_pahari
ENSFDAG00000016060	CPSF1	100	97.641	MGP_SPRETEiJ_G0020839	Cpsf1	100	97.641	Mus_spretus
ENSFDAG00000016060	CPSF1	94	95.997	ENSMPUG00000006419	CPSF1	93	95.997	Mustela_putorius_furo
ENSFDAG00000016060	CPSF1	100	96.808	ENSNGAG00000022460	Cpsf1	100	96.808	Nannospalax_galili
ENSFDAG00000016060	CPSF1	100	75.069	ENSNBRG00000000813	cpsf1	100	75.069	Neolamprologus_brichardi
ENSFDAG00000016060	CPSF1	86	84.926	ENSNLEG00000010633	-	100	88.889	Nomascus_leucogenys
ENSFDAG00000016060	CPSF1	82	98.256	ENSMEUG00000014922	CPSF1	85	98.256	Notamacropus_eugenii
ENSFDAG00000016060	CPSF1	61	96.429	ENSOPRG00000004693	-	71	96.429	Ochotona_princeps
ENSFDAG00000016060	CPSF1	100	99.375	ENSODEG00000013995	CPSF1	100	99.375	Octodon_degus
ENSFDAG00000016060	CPSF1	100	80.402	ENSONIG00000007676	cpsf1	100	80.540	Oreochromis_niloticus
ENSFDAG00000016060	CPSF1	58	92.143	ENSOANG00000010716	CPSF1	88	92.143	Ornithorhynchus_anatinus
ENSFDAG00000016060	CPSF1	100	77.483	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSFDAG00000016060	CPSF1	100	77.619	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSFDAG00000016060	CPSF1	100	77.551	ENSORLG00015009979	cpsf1	100	77.619	Oryzias_latipes_hsok
ENSFDAG00000016060	CPSF1	100	77.589	ENSOMEG00000011849	cpsf1	100	77.861	Oryzias_melastigma
ENSFDAG00000016060	CPSF1	100	97.087	ENSOGAG00000000315	CPSF1	100	97.087	Otolemur_garnettii
ENSFDAG00000016060	CPSF1	100	96.671	ENSPPAG00000019280	CPSF1	100	96.671	Pan_paniscus
ENSFDAG00000016060	CPSF1	100	96.671	ENSPTRG00000049288	-	100	96.671	Pan_troglodytes
ENSFDAG00000016060	CPSF1	100	95.024	ENSPTRG00000051253	-	100	95.024	Pan_troglodytes
ENSFDAG00000016060	CPSF1	97	96.413	ENSPANG00000015005	CPSF1	100	96.413	Papio_anubis
ENSFDAG00000016060	CPSF1	100	80.969	ENSPKIG00000002582	cpsf1	100	81.411	Paramormyrops_kingsleyae
ENSFDAG00000016060	CPSF1	100	93.168	ENSPCIG00000009035	CPSF1	100	93.168	Phascolarctos_cinereus
ENSFDAG00000016060	CPSF1	100	76.777	ENSPFOG00000012870	cpsf1	100	76.777	Poecilia_formosa
ENSFDAG00000016060	CPSF1	100	76.658	ENSPREG00000016307	cpsf1	100	76.658	Poecilia_reticulata
ENSFDAG00000016060	CPSF1	100	88.558	ENSPPYG00000018973	CPSF1	100	88.558	Pongo_abelii
ENSFDAG00000016060	CPSF1	91	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
ENSFDAG00000016060	CPSF1	100	93.412	ENSPCOG00000020001	CPSF1	100	93.412	Propithecus_coquereli
ENSFDAG00000016060	CPSF1	91	99.143	ENSPVAG00000006761	CPSF1	91	99.143	Pteropus_vampyrus
ENSFDAG00000016060	CPSF1	100	79.016	ENSPNYG00000004906	cpsf1	100	79.152	Pundamilia_nyererei
ENSFDAG00000016060	CPSF1	100	75.519	ENSPNAG00000024395	cpsf1	100	75.519	Pygocentrus_nattereri
ENSFDAG00000016060	CPSF1	100	97.571	ENSRNOG00000030705	Cpsf1	100	97.571	Rattus_norvegicus
ENSFDAG00000016060	CPSF1	100	96.533	ENSRBIG00000044907	CPSF1	100	96.533	Rhinopithecus_bieti
ENSFDAG00000016060	CPSF1	100	96.463	ENSRROG00000044861	CPSF1	100	96.463	Rhinopithecus_roxellana
ENSFDAG00000016060	CPSF1	97	96.557	ENSSBOG00000027177	CPSF1	100	96.557	Saimiri_boliviensis_boliviensis
ENSFDAG00000016060	CPSF1	100	93.099	ENSSHAG00000006500	CPSF1	100	93.099	Sarcophilus_harrisii
ENSFDAG00000016060	CPSF1	100	78.084	ENSSFOG00015004606	cpsf1	100	81.368	Scleropages_formosus
ENSFDAG00000016060	CPSF1	100	78.402	ENSSMAG00000020547	cpsf1	100	78.470	Scophthalmus_maximus
ENSFDAG00000016060	CPSF1	100	79.654	ENSSDUG00000001100	cpsf1	100	80.000	Seriola_dumerili
ENSFDAG00000016060	CPSF1	100	79.778	ENSSLDG00000003619	cpsf1	100	79.917	Seriola_lalandi_dorsalis
ENSFDAG00000016060	CPSF1	89	100.000	ENSSARG00000003643	CPSF1	92	100.000	Sorex_araneus
ENSFDAG00000016060	CPSF1	96	87.743	ENSSPUG00000014396	CPSF1	100	87.743	Sphenodon_punctatus
ENSFDAG00000016060	CPSF1	100	78.484	ENSSPAG00000005349	cpsf1	100	78.620	Stegastes_partitus
ENSFDAG00000016060	CPSF1	100	95.706	ENSSSCG00000005906	CPSF1	100	95.706	Sus_scrofa
ENSFDAG00000016060	CPSF1	96	78.151	ENSTRUG00000013134	cpsf1	99	78.291	Takifugu_rubripes
ENSFDAG00000016060	CPSF1	100	78.900	ENSTNIG00000014027	cpsf1	100	78.969	Tetraodon_nigroviridis
ENSFDAG00000016060	CPSF1	77	89.310	ENSTBEG00000001756	CPSF1	91	89.310	Tupaia_belangeri
ENSFDAG00000016060	CPSF1	90	97.409	ENSTTRG00000001937	CPSF1	90	97.409	Tursiops_truncatus
ENSFDAG00000016060	CPSF1	97	96.638	ENSUAMG00000006476	CPSF1	98	96.638	Ursus_americanus
ENSFDAG00000016060	CPSF1	100	77.909	ENSXCOG00000003608	cpsf1	100	78.186	Xiphophorus_couchianus
ENSFDAG00000016060	CPSF1	100	77.285	ENSXMAG00000005798	cpsf1	100	77.562	Xiphophorus_maculatus