EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFDAG00000016478 (Gene tree)
Gene ID: 104849656
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Minus strand
Length: 113505 bases
Position: chrKN123961.1:3065995-3179499
Accession: 104849656
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000008086	R3H	PF01424.22	2.5e-12	1	1
ENSFDAP00000008087	R3H	PF01424.22	5.3e-12	1	1
ENSFDAP00000008090	R3H	PF01424.22	6.1e-12	1	1
ENSFDAP00000008096	R3H	PF01424.22	1.4e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000021224	R3HDM1-202	1455	-	ENSFDAP00000008087	485 (aa)	-	-
ENSFDAT00000021232	R3HDM1-203	3414	XM_010606153	ENSFDAP00000008096	1137 (aa)	XP_010604455	-
ENSFDAT00000021256	R3HDM1-204	4025	XM_019204834	ENSFDAP00000008124	387 (aa)	XP_019060379	-
ENSFDAT00000029667	R3HDM1-205	2094	-	ENSFDAP00000008090	549 (aa)	-	-
ENSFDAT00000021223	R3HDM1-201	1305	-	ENSFDAP00000008086	287 (aa)	-	-

Gene Model

Click here to download ENSFDAG00000016478's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000016478's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFDAG00000016478	R3HDM1	87	60.731	ENSFDAG00000009301	ARPP21	95	44.988
ENSFDAG00000016478	R3HDM1	80	70.085	ENSFDAG00000019385	R3HDM2	98	57.702

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000016478	R3HDM1	99	94.346	ENSG00000048991	R3HDM1	99	94.346	Homo_sapiens
ENSFDAG00000016478	R3HDM1	100	64.548	ENSAPOG00000020850	r3hdm1	97	48.656	Acanthochromis_polyacanthus
ENSFDAG00000016478	R3HDM1	99	95.203	ENSAMEG00000014886	R3HDM1	100	89.719	Ailuropoda_melanoleuca
ENSFDAG00000016478	R3HDM1	90	55.580	ENSACIG00000018791	-	81	58.151	Amphilophus_citrinellus
ENSFDAG00000016478	R3HDM1	100	64.214	ENSAOCG00000005192	r3hdm1	99	48.100	Amphiprion_ocellaris
ENSFDAG00000016478	R3HDM1	100	59.727	ENSAPEG00000016108	r3hdm1	99	46.061	Amphiprion_percula
ENSFDAG00000016478	R3HDM1	100	58.904	ENSATEG00000000232	r3hdm1	99	45.764	Anabas_testudineus
ENSFDAG00000016478	R3HDM1	100	78.073	ENSAPLG00000015231	R3HDM1	100	75.175	Anas_platyrhynchos
ENSFDAG00000016478	R3HDM1	94	83.107	ENSACAG00000001676	R3HDM1	100	76.856	Anolis_carolinensis
ENSFDAG00000016478	R3HDM1	100	93.827	ENSANAG00000035334	R3HDM1	100	89.104	Aotus_nancymaae
ENSFDAG00000016478	R3HDM1	82	65.311	ENSACLG00000027282	r3hdm1	97	47.813	Astatotilapia_calliptera
ENSFDAG00000016478	R3HDM1	79	57.143	ENSAMXG00000020587	arpp21	80	59.109	Astyanax_mexicanus
ENSFDAG00000016478	R3HDM1	99	68.954	ENSAMXG00000012861	R3HDM1	100	71.635	Astyanax_mexicanus
ENSFDAG00000016478	R3HDM1	88	71.191	ENSAMXG00000003536	r3hdm1	100	62.093	Astyanax_mexicanus
ENSFDAG00000016478	R3HDM1	99	94.465	ENSBTAG00000013302	R3HDM1	100	91.484	Bos_taurus
ENSFDAG00000016478	R3HDM1	100	93.827	ENSCJAG00000011718	R3HDM1	100	88.489	Callithrix_jacchus
ENSFDAG00000016478	R3HDM1	99	95.387	ENSCAFG00000005075	R3HDM1	100	90.158	Canis_familiaris
ENSFDAG00000016478	R3HDM1	99	95.387	ENSCAFG00020016119	R3HDM1	100	92.970	Canis_lupus_dingo
ENSFDAG00000016478	R3HDM1	99	94.649	ENSCHIG00000020851	R3HDM1	100	91.308	Capra_hircus
ENSFDAG00000016478	R3HDM1	100	83.275	ENSCAPG00000013043	-	100	83.275	Cavia_aperea
ENSFDAG00000016478	R3HDM1	100	93.755	ENSCPOG00000012784	R3HDM1	100	94.093	Cavia_porcellus
ENSFDAG00000016478	R3HDM1	100	94.033	ENSCCAG00000027199	R3HDM1	100	88.576	Cebus_capucinus
ENSFDAG00000016478	R3HDM1	100	91.396	ENSCATG00000023642	R3HDM1	100	91.308	Cercocebus_atys
ENSFDAG00000016478	R3HDM1	100	95.679	ENSCLAG00000007962	R3HDM1	100	95.679	Chinchilla_lanigera
ENSFDAG00000016478	R3HDM1	100	91.308	ENSCSAG00000016356	R3HDM1	100	91.220	Chlorocebus_sabaeus
ENSFDAG00000016478	R3HDM1	73	92.308	ENSCHOG00000013638	R3HDM1	91	77.255	Choloepus_hoffmanni
ENSFDAG00000016478	R3HDM1	87	81.560	ENSCPBG00000009645	R3HDM1	100	91.513	Chrysemys_picta_bellii
ENSFDAG00000016478	R3HDM1	100	89.369	ENSCANG00000034748	R3HDM1	100	88.401	Colobus_angolensis_palliatus
ENSFDAG00000016478	R3HDM1	99	93.542	ENSCGRG00001012357	R3hdm1	97	90.564	Cricetulus_griseus_chok1gshd
ENSFDAG00000016478	R3HDM1	100	94.077	ENSCGRG00000012080	R3hdm1	100	94.077	Cricetulus_griseus_crigri
ENSFDAG00000016478	R3HDM1	100	58.562	ENSCSEG00000008944	r3hdm1	99	42.110	Cynoglossus_semilaevis
ENSFDAG00000016478	R3HDM1	100	63.545	ENSCVAG00000007582	r3hdm1	99	47.530	Cyprinodon_variegatus
ENSFDAG00000016478	R3HDM1	79	55.702	ENSDARG00000061081	arpp21	82	36.712	Danio_rerio
ENSFDAG00000016478	R3HDM1	99	87.614	ENSDNOG00000000771	R3HDM1	100	84.978	Dasypus_novemcinctus
ENSFDAG00000016478	R3HDM1	100	95.122	ENSDORG00000027689	-	100	95.122	Dipodomys_ordii
ENSFDAG00000016478	R3HDM1	100	86.711	ENSETEG00000013606	R3HDM1	100	77.788	Echinops_telfairi
ENSFDAG00000016478	R3HDM1	87	50.336	ENSEBUG00000014746	arpp21	97	41.379	Eptatretus_burgeri
ENSFDAG00000016478	R3HDM1	99	95.018	ENSEASG00005007392	R3HDM1	100	95.074	Equus_asinus_asinus
ENSFDAG00000016478	R3HDM1	100	94.774	ENSECAG00000019114	R3HDM1	100	95.074	Equus_caballus
ENSFDAG00000016478	R3HDM1	99	85.055	ENSEEUG00000012589	R3HDM1	91	84.686	Erinaceus_europaeus
ENSFDAG00000016478	R3HDM1	77	69.643	ENSELUG00000014413	r3hdm1	100	50.261	Esox_lucius
ENSFDAG00000016478	R3HDM1	80	80.258	ENSELUG00000004909	R3HDM1	99	53.165	Esox_lucius
ENSFDAG00000016478	R3HDM1	100	95.473	ENSFCAG00000027113	R3HDM1	100	96.059	Felis_catus
ENSFDAG00000016478	R3HDM1	99	79.596	ENSFALG00000013731	R3HDM1	93	67.832	Ficedula_albicollis
ENSFDAG00000016478	R3HDM1	100	65.188	ENSFHEG00000018713	r3hdm1	100	47.088	Fundulus_heteroclitus
ENSFDAG00000016478	R3HDM1	78	72.149	ENSGMOG00000006042	-	74	68.026	Gadus_morhua
ENSFDAG00000016478	R3HDM1	100	73.519	ENSGALG00000012246	R3HDM1	99	85.574	Gallus_gallus
ENSFDAG00000016478	R3HDM1	89	62.115	ENSGAFG00000006203	r3hdm1	94	47.308	Gambusia_affinis
ENSFDAG00000016478	R3HDM1	80	72.458	ENSGACG00000014925	r3hdm1	99	48.999	Gasterosteus_aculeatus
ENSFDAG00000016478	R3HDM1	100	84.922	ENSGAGG00000007840	R3HDM1	96	83.208	Gopherus_agassizii
ENSFDAG00000016478	R3HDM1	100	94.425	ENSGGOG00000008156	R3HDM1	100	88.401	Gorilla_gorilla
ENSFDAG00000016478	R3HDM1	100	62.876	ENSHBUG00000015737	R3HDM1	90	59.238	Haplochromis_burtoni
ENSFDAG00000016478	R3HDM1	100	96.701	ENSHGLG00000015718	R3HDM1	100	96.701	Heterocephalus_glaber_female
ENSFDAG00000016478	R3HDM1	99	71.033	ENSHGLG00100015374	-	100	69.745	Heterocephalus_glaber_male
ENSFDAG00000016478	R3HDM1	100	96.701	ENSHGLG00100003184	-	100	96.701	Heterocephalus_glaber_male
ENSFDAG00000016478	R3HDM1	82	60.488	ENSHCOG00000013366	r3hdm1	88	60.500	Hippocampus_comes
ENSFDAG00000016478	R3HDM1	57	66.667	ENSHCOG00000005036	-	55	78.947	Hippocampus_comes
ENSFDAG00000016478	R3HDM1	93	61.555	ENSIPUG00000013629	r3hdm1	95	68.536	Ictalurus_punctatus
ENSFDAG00000016478	R3HDM1	99	69.492	ENSIPUG00000001676	R3HDM1	99	65.550	Ictalurus_punctatus
ENSFDAG00000016478	R3HDM1	100	95.267	ENSSTOG00000007572	R3HDM1	100	95.267	Ictidomys_tridecemlineatus
ENSFDAG00000016478	R3HDM1	100	93.380	ENSJJAG00000018208	-	100	93.380	Jaculus_jaculus
ENSFDAG00000016478	R3HDM1	59	77.193	ENSKMAG00000013373	-	89	77.193	Kryptolebias_marmoratus
ENSFDAG00000016478	R3HDM1	100	58.020	ENSLBEG00000027981	-	87	64.691	Labrus_bergylta
ENSFDAG00000016478	R3HDM1	100	74.026	ENSLACG00000005334	R3HDM1	100	72.127	Latimeria_chalumnae
ENSFDAG00000016478	R3HDM1	99	72.039	ENSLOCG00000001641	r3hdm1	100	64.630	Lepisosteus_oculatus
ENSFDAG00000016478	R3HDM1	99	94.834	ENSLAFG00000009065	R3HDM1	100	91.740	Loxodonta_africana
ENSFDAG00000016478	R3HDM1	100	90.033	ENSMFAG00000030331	R3HDM1	100	95.567	Macaca_fascicularis
ENSFDAG00000016478	R3HDM1	100	90.033	ENSMMUG00000009844	R3HDM1	100	88.576	Macaca_mulatta
ENSFDAG00000016478	R3HDM1	100	90.033	ENSMNEG00000027793	R3HDM1	100	95.567	Macaca_nemestrina
ENSFDAG00000016478	R3HDM1	100	90.033	ENSMLEG00000043189	R3HDM1	100	88.752	Mandrillus_leucophaeus
ENSFDAG00000016478	R3HDM1	100	64.505	ENSMAMG00000004532	r3hdm1	99	47.930	Mastacembelus_armatus
ENSFDAG00000016478	R3HDM1	100	62.542	ENSMZEG00005003157	r3hdm1	99	48.048	Maylandia_zebra
ENSFDAG00000016478	R3HDM1	100	77.409	ENSMGAG00000012461	R3HDM1	100	74.431	Meleagris_gallopavo
ENSFDAG00000016478	R3HDM1	100	94.425	ENSMAUG00000010315	R3hdm1	100	94.425	Mesocricetus_auratus
ENSFDAG00000016478	R3HDM1	100	84.321	ENSMICG00000042655	-	100	85.222	Microcebus_murinus
ENSFDAG00000016478	R3HDM1	100	95.267	ENSMICG00000005900	-	100	88.772	Microcebus_murinus
ENSFDAG00000016478	R3HDM1	100	94.077	ENSMOCG00000019833	-	100	94.077	Microtus_ochrogaster
ENSFDAG00000016478	R3HDM1	99	85.714	ENSMODG00000000923	R3HDM1	97	78.653	Monodelphis_domestica
ENSFDAG00000016478	R3HDM1	100	65.646	ENSMALG00000009000	r3hdm1	99	45.861	Monopterus_albus
ENSFDAG00000016478	R3HDM1	100	94.077	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.077	Mus_caroli
ENSFDAG00000016478	R3HDM1	100	94.077	ENSMUSG00000056211	R3hdm1	100	94.077	Mus_musculus
ENSFDAG00000016478	R3HDM1	100	93.728	MGP_PahariEiJ_G0027779	R3hdm1	100	93.728	Mus_pahari
ENSFDAG00000016478	R3HDM1	100	94.077	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.077	Mus_spretus
ENSFDAG00000016478	R3HDM1	99	95.203	ENSMPUG00000002412	R3HDM1	100	89.367	Mustela_putorius_furo
ENSFDAG00000016478	R3HDM1	99	93.911	ENSMLUG00000013824	R3HDM1	100	88.323	Myotis_lucifugus
ENSFDAG00000016478	R3HDM1	100	93.728	ENSNGAG00000001313	-	100	93.728	Nannospalax_galili
ENSFDAG00000016478	R3HDM1	94	95.643	ENSNLEG00000008622	R3HDM1	100	88.576	Nomascus_leucogenys
ENSFDAG00000016478	R3HDM1	99	74.539	ENSMEUG00000011784	R3HDM1	100	67.878	Notamacropus_eugenii
ENSFDAG00000016478	R3HDM1	100	96.864	ENSODEG00000008607	R3HDM1	100	96.864	Octodon_degus
ENSFDAG00000016478	R3HDM1	91	60.851	ENSONIG00000012017	r3hdm1	98	46.864	Oreochromis_niloticus
ENSFDAG00000016478	R3HDM1	100	85.714	ENSOANG00000007987	R3HDM1	100	77.885	Ornithorhynchus_anatinus
ENSFDAG00000016478	R3HDM1	99	94.649	ENSOCUG00000017366	R3HDM1	98	88.518	Oryctolagus_cuniculus
ENSFDAG00000016478	R3HDM1	100	64.505	ENSORLG00000004297	r3hdm1	99	45.775	Oryzias_latipes
ENSFDAG00000016478	R3HDM1	100	65.188	ENSORLG00020019252	-	93	60.048	Oryzias_latipes_hni
ENSFDAG00000016478	R3HDM1	100	64.164	ENSORLG00015017355	r3hdm1	99	45.868	Oryzias_latipes_hsok
ENSFDAG00000016478	R3HDM1	100	64.333	ENSOMEG00000003882	-	94	58.317	Oryzias_melastigma
ENSFDAG00000016478	R3HDM1	99	95.018	ENSOGAG00000003136	R3HDM1	100	89.279	Otolemur_garnettii
ENSFDAG00000016478	R3HDM1	99	94.649	ENSOARG00000010788	R3HDM1	100	88.401	Ovis_aries
ENSFDAG00000016478	R3HDM1	95	95.671	ENSPPAG00000027858	R3HDM1	100	89.279	Pan_paniscus
ENSFDAG00000016478	R3HDM1	100	95.473	ENSPPRG00000002626	R3HDM1	100	89.104	Panthera_pardus
ENSFDAG00000016478	R3HDM1	100	95.679	ENSPTIG00000016581	R3HDM1	100	89.104	Panthera_tigris_altaica
ENSFDAG00000016478	R3HDM1	95	95.671	ENSPTRG00000012494	R3HDM1	100	89.279	Pan_troglodytes
ENSFDAG00000016478	R3HDM1	100	90.033	ENSPANG00000026448	R3HDM1	100	88.664	Papio_anubis
ENSFDAG00000016478	R3HDM1	100	65.320	ENSPKIG00000011224	R3HDM1	90	64.878	Paramormyrops_kingsleyae
ENSFDAG00000016478	R3HDM1	97	66.901	ENSPKIG00000004328	r3hdm1	91	76.190	Paramormyrops_kingsleyae
ENSFDAG00000016478	R3HDM1	95	84.615	ENSPSIG00000012915	R3HDM1	100	74.759	Pelodiscus_sinensis
ENSFDAG00000016478	R3HDM1	87	55.479	ENSPMGG00000011264	-	92	54.795	Periophthalmus_magnuspinnatus
ENSFDAG00000016478	R3HDM1	100	94.077	ENSPEMG00000015187	R3hdm1	100	94.077	Peromyscus_maniculatus_bairdii
ENSFDAG00000016478	R3HDM1	80	62.857	ENSPMAG00000003369	-	98	42.884	Petromyzon_marinus
ENSFDAG00000016478	R3HDM1	100	89.273	ENSPCIG00000002491	R3HDM1	100	88.971	Phascolarctos_cinereus
ENSFDAG00000016478	R3HDM1	100	62.542	ENSPFOG00000015036	r3hdm1	99	47.922	Poecilia_formosa
ENSFDAG00000016478	R3HDM1	89	62.084	ENSPLAG00000018042	r3hdm1	95	47.395	Poecilia_latipinna
ENSFDAG00000016478	R3HDM1	89	62.306	ENSPMEG00000023947	r3hdm1	95	47.342	Poecilia_mexicana
ENSFDAG00000016478	R3HDM1	100	63.481	ENSPREG00000007902	r3hdm1	94	60.349	Poecilia_reticulata
ENSFDAG00000016478	R3HDM1	100	87.533	ENSPPYG00000012815	R3HDM1	100	87.621	Pongo_abelii
ENSFDAG00000016478	R3HDM1	100	86.711	ENSPCAG00000006208	R3HDM1	100	76.450	Procavia_capensis
ENSFDAG00000016478	R3HDM1	100	89.095	ENSPCOG00000012698	R3HDM1	100	86.140	Propithecus_coquereli
ENSFDAG00000016478	R3HDM1	99	88.745	ENSPVAG00000006098	R3HDM1	100	81.634	Pteropus_vampyrus
ENSFDAG00000016478	R3HDM1	100	62.542	ENSPNYG00000008701	-	97	61.005	Pundamilia_nyererei
ENSFDAG00000016478	R3HDM1	80	75.424	ENSPNAG00000013952	r3hdm1	93	72.269	Pygocentrus_nattereri
ENSFDAG00000016478	R3HDM1	76	76.603	ENSPNAG00000005436	R3HDM1	99	76.527	Pygocentrus_nattereri
ENSFDAG00000016478	R3HDM1	79	55.895	ENSPNAG00000004162	arpp21	77	58.000	Pygocentrus_nattereri
ENSFDAG00000016478	R3HDM1	99	93.358	ENSRNOG00000004099	R3hdm1	100	89.543	Rattus_norvegicus
ENSFDAG00000016478	R3HDM1	100	86.819	ENSRBIG00000033317	R3HDM1	100	98.524	Rhinopithecus_bieti
ENSFDAG00000016478	R3HDM1	100	90.033	ENSRROG00000034534	R3HDM1	100	87.884	Rhinopithecus_roxellana
ENSFDAG00000016478	R3HDM1	94	96.078	ENSSBOG00000020389	R3HDM1	100	88.225	Saimiri_boliviensis_boliviensis
ENSFDAG00000016478	R3HDM1	99	88.398	ENSSHAG00000016999	R3HDM1	100	79.912	Sarcophilus_harrisii
ENSFDAG00000016478	R3HDM1	100	67.427	ENSSFOG00015019851	-	99	56.884	Scleropages_formosus
ENSFDAG00000016478	R3HDM1	100	71.918	ENSSFOG00015014134	r3hdm1	100	71.117	Scleropages_formosus
ENSFDAG00000016478	R3HDM1	100	62.414	ENSSMAG00000001669	r3hdm1	99	43.823	Scophthalmus_maximus
ENSFDAG00000016478	R3HDM1	100	65.306	ENSSDUG00000010749	r3hdm1	99	46.988	Seriola_dumerili
ENSFDAG00000016478	R3HDM1	100	64.000	ENSSLDG00000004499	r3hdm1	99	46.537	Seriola_lalandi_dorsalis
ENSFDAG00000016478	R3HDM1	100	77.741	ENSSARG00000000352	-	69	82.392	Sorex_araneus
ENSFDAG00000016478	R3HDM1	95	85.221	ENSSPUG00000004167	R3HDM1	100	76.182	Sphenodon_punctatus
ENSFDAG00000016478	R3HDM1	100	65.870	ENSSPAG00000004648	r3hdm1	99	47.564	Stegastes_partitus
ENSFDAG00000016478	R3HDM1	100	95.062	ENSSSCG00000015692	R3HDM1	100	92.011	Sus_scrofa
ENSFDAG00000016478	R3HDM1	99	79.044	ENSTGUG00000011750	R3HDM1	100	69.668	Taeniopygia_guttata
ENSFDAG00000016478	R3HDM1	82	63.196	ENSTRUG00000011654	r3hdm1	93	46.543	Takifugu_rubripes
ENSFDAG00000016478	R3HDM1	80	70.588	ENSTNIG00000010362	r3hdm1	95	45.066	Tetraodon_nigroviridis
ENSFDAG00000016478	R3HDM1	94	89.126	ENSTTRG00000003935	R3HDM1	100	82.689	Tursiops_truncatus
ENSFDAG00000016478	R3HDM1	99	95.203	ENSUAMG00000024806	R3HDM1	99	92.620	Ursus_americanus
ENSFDAG00000016478	R3HDM1	91	97.511	ENSUMAG00000005552	R3HDM1	100	85.714	Ursus_maritimus
ENSFDAG00000016478	R3HDM1	85	93.382	ENSVPAG00000007333	R3HDM1	93	84.163	Vicugna_pacos
ENSFDAG00000016478	R3HDM1	100	94.425	ENSVVUG00000006457	R3HDM1	100	92.707	Vulpes_vulpes
ENSFDAG00000016478	R3HDM1	86	82.185	ENSXETG00000019330	r3hdm1	100	64.597	Xenopus_tropicalis
ENSFDAG00000016478	R3HDM1	82	63.702	ENSXCOG00000017448	r3hdm1	96	47.313	Xiphophorus_couchianus
ENSFDAG00000016478	R3HDM1	100	62.207	ENSXMAG00000007885	r3hdm1	99	46.679	Xiphophorus_maculatus