EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFDAG00000016578 (Gene tree)
Gene ID: 104854437
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein polypeptide N
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 4947 bases
Position: chrKN124938.1:183118-188064
Accession: 104854437
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000008274	LSM	PF01423.22	5.6e-20	1	1
ENSFDAP00000008275	LSM	PF01423.22	5.7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000021386	-	717	-	ENSFDAP00000008274	238 (aa)	-	-
ENSFDAT00000029693	-	943	XM_010612918	ENSFDAP00000008275	240 (aa)	XP_010611220	UPI00033337F7

Gene Model

Click here to download ENSFDAG00000016578's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000016578's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFDAG00000016578	-	77	86.339	ENSFDAG00000010528	-	86	86.339
ENSFDAG00000016578	-	92	92.760	ENSFDAG00000009937	SNRPB	96	92.760

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000016578	-	100	99.583	ENSG00000128739	SNRPN	100	100.000	Homo_sapiens
ENSFDAG00000016578	-	99	99.163	ENSAMEG00000007034	SNRPN	98	99.163	Ailuropoda_melanoleuca
ENSFDAG00000016578	-	100	99.583	ENSANAG00000034241	SNRPN	100	99.583	Aotus_nancymaae
ENSFDAG00000016578	-	100	99.167	ENSBTAG00000008251	SNRPN	100	99.167	Bos_taurus
ENSFDAG00000016578	-	95	99.123	ENSCJAG00000042622	-	95	99.123	Callithrix_jacchus
ENSFDAG00000016578	-	100	99.583	ENSCJAG00000003759	-	100	99.583	Callithrix_jacchus
ENSFDAG00000016578	-	100	99.167	ENSCAFG00000010127	SNRPN	100	99.167	Canis_familiaris
ENSFDAG00000016578	-	100	99.167	ENSCAFG00020024075	SNRPN	100	99.167	Canis_lupus_dingo
ENSFDAG00000016578	-	100	99.167	ENSCHIG00000017477	SNRPN	100	99.167	Capra_hircus
ENSFDAG00000016578	-	100	99.583	ENSTSYG00000005248	SNRPN	100	99.583	Carlito_syrichta
ENSFDAG00000016578	-	100	99.583	ENSCAPG00000003047	SNRPN	100	99.583	Cavia_aperea
ENSFDAG00000016578	-	100	99.583	ENSCPOG00000020270	SNRPN	100	99.583	Cavia_porcellus
ENSFDAG00000016578	-	100	99.583	ENSCCAG00000024231	SNRPN	100	99.583	Cebus_capucinus
ENSFDAG00000016578	-	100	99.583	ENSCATG00000032518	SNRPN	100	99.583	Cercocebus_atys
ENSFDAG00000016578	-	100	99.583	ENSCLAG00000011376	SNRPN	100	99.583	Chinchilla_lanigera
ENSFDAG00000016578	-	100	99.583	ENSCSAG00000006406	SNRPN	100	99.583	Chlorocebus_sabaeus
ENSFDAG00000016578	-	99	98.723	ENSCHOG00000001846	SNRPN	88	99.145	Choloepus_hoffmanni
ENSFDAG00000016578	-	100	99.583	ENSCANG00000041156	SNRPN	100	99.583	Colobus_angolensis_palliatus
ENSFDAG00000016578	-	100	99.167	ENSCGRG00001004136	Snrpn	100	99.167	Cricetulus_griseus_chok1gshd
ENSFDAG00000016578	-	100	99.167	ENSCGRG00000001621	Snrpn	100	99.167	Cricetulus_griseus_crigri
ENSFDAG00000016578	-	72	92.486	ENSCVAG00000014193	SNRPN	69	92.857	Cyprinodon_variegatus
ENSFDAG00000016578	-	99	98.745	ENSDNOG00000037060	SNRPN	98	98.745	Dasypus_novemcinctus
ENSFDAG00000016578	-	100	100.000	ENSDORG00000004527	Snrpn	100	100.000	Dipodomys_ordii
ENSFDAG00000016578	-	100	99.167	ENSEASG00005017871	SNRPN	100	99.167	Equus_asinus_asinus
ENSFDAG00000016578	-	100	99.167	ENSECAG00000018148	SNRPN	100	99.167	Equus_caballus
ENSFDAG00000016578	-	99	98.745	ENSEEUG00000007440	-	100	98.745	Erinaceus_europaeus
ENSFDAG00000016578	-	100	99.167	ENSFCAG00000022298	-	100	99.167	Felis_catus
ENSFDAG00000016578	-	74	76.836	ENSGMOG00000018161	SNRPN	74	76.190	Gadus_morhua
ENSFDAG00000016578	-	90	73.023	ENSGGOG00000024469	-	69	83.942	Gorilla_gorilla
ENSFDAG00000016578	-	100	99.583	ENSGGOG00000003988	SNRPN	100	99.583	Gorilla_gorilla
ENSFDAG00000016578	-	100	85.000	ENSHGLG00000002327	-	88	84.507	Heterocephalus_glaber_female
ENSFDAG00000016578	-	90	80.465	ENSHGLG00000020936	-	88	79.343	Heterocephalus_glaber_female
ENSFDAG00000016578	-	100	99.583	ENSHGLG00000011924	SNRPN	100	99.583	Heterocephalus_glaber_female
ENSFDAG00000016578	-	89	91.080	ENSHGLG00000019812	-	89	90.610	Heterocephalus_glaber_female
ENSFDAG00000016578	-	100	82.500	ENSHGLG00100004881	-	88	82.629	Heterocephalus_glaber_male
ENSFDAG00000016578	-	89	91.080	ENSHGLG00100021056	-	89	90.610	Heterocephalus_glaber_male
ENSFDAG00000016578	-	100	99.583	ENSHGLG00100016559	SNRPN	100	99.583	Heterocephalus_glaber_male
ENSFDAG00000016578	-	100	99.583	ENSSTOG00000001339	SNRPN	100	99.583	Ictidomys_tridecemlineatus
ENSFDAG00000016578	-	99	100.000	ENSLAFG00000009458	SNRPN	99	100.000	Loxodonta_africana
ENSFDAG00000016578	-	100	99.583	ENSMFAG00000042235	SNRPN	100	99.583	Macaca_fascicularis
ENSFDAG00000016578	-	100	99.583	ENSMMUG00000023139	SNURF	100	99.583	Macaca_mulatta
ENSFDAG00000016578	-	100	99.583	ENSMNEG00000031291	SNRPN	100	99.583	Macaca_nemestrina
ENSFDAG00000016578	-	100	99.583	ENSMLEG00000038837	SNRPN	100	99.583	Mandrillus_leucophaeus
ENSFDAG00000016578	-	92	85.909	ENSMGAG00000008696	SNRPN	92	85.909	Meleagris_gallopavo
ENSFDAG00000016578	-	100	99.583	ENSMAUG00000000051	Snrpn	100	99.583	Mesocricetus_auratus
ENSFDAG00000016578	-	100	99.583	ENSMICG00000042356	SNRPN	100	99.583	Microcebus_murinus
ENSFDAG00000016578	-	100	99.583	ENSMOCG00000015350	Snrpn	100	99.583	Microtus_ochrogaster
ENSFDAG00000016578	-	92	94.118	ENSMODG00000013926	-	92	94.118	Monodelphis_domestica
ENSFDAG00000016578	-	100	99.583	MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	Mus_caroli
ENSFDAG00000016578	-	100	99.583	ENSMUSG00000102252	Snrpn	100	99.583	Mus_musculus
ENSFDAG00000016578	-	100	99.583	MGP_PahariEiJ_G0013040	Snrpn	100	99.583	Mus_pahari
ENSFDAG00000016578	-	100	99.583	MGP_SPRETEiJ_G0030918	Snrpn	100	99.583	Mus_spretus
ENSFDAG00000016578	-	100	99.167	ENSMPUG00000014638	-	100	99.167	Mustela_putorius_furo
ENSFDAG00000016578	-	88	51.659	ENSMPUG00000007115	-	64	70.423	Mustela_putorius_furo
ENSFDAG00000016578	-	99	99.582	ENSMLUG00000023361	-	98	99.582	Myotis_lucifugus
ENSFDAG00000016578	-	96	62.719	ENSMLUG00000024428	-	62	71.111	Myotis_lucifugus
ENSFDAG00000016578	-	86	61.275	ENSMLUG00000025849	-	73	63.057	Myotis_lucifugus
ENSFDAG00000016578	-	100	99.583	ENSNGAG00000000181	Snrpn	100	99.583	Nannospalax_galili
ENSFDAG00000016578	-	100	83.333	ENSNLEG00000001376	SNRPN	99	83.333	Nomascus_leucogenys
ENSFDAG00000016578	-	98	81.624	ENSODEG00000016065	-	87	86.957	Octodon_degus
ENSFDAG00000016578	-	100	100.000	ENSODEG00000013478	-	100	100.000	Octodon_degus
ENSFDAG00000016578	-	100	99.583	ENSODEG00000020110	-	100	99.583	Octodon_degus
ENSFDAG00000016578	-	95	99.563	ENSODEG00000019708	-	96	99.563	Octodon_degus
ENSFDAG00000016578	-	100	99.170	ENSOCUG00000003532	-	100	99.170	Oryctolagus_cuniculus
ENSFDAG00000016578	-	74	92.090	ENSORLG00020007490	SNRPN	69	93.452	Oryzias_latipes_hni
ENSFDAG00000016578	-	74	92.090	ENSORLG00015003332	SNRPN	69	93.452	Oryzias_latipes_hsok
ENSFDAG00000016578	-	74	92.655	ENSOMEG00000002066	SNRPN	69	94.048	Oryzias_melastigma
ENSFDAG00000016578	-	100	99.583	ENSOGAG00000007392	SNRPN	100	99.583	Otolemur_garnettii
ENSFDAG00000016578	-	100	99.167	ENSOARG00000009080	SNRPN	100	99.167	Ovis_aries
ENSFDAG00000016578	-	97	69.397	ENSPPAG00000034049	-	64	80.851	Pan_paniscus
ENSFDAG00000016578	-	100	99.583	ENSPPAG00000027650	SNRPN	100	99.583	Pan_paniscus
ENSFDAG00000016578	-	100	99.167	ENSPPRG00000019878	-	100	99.167	Panthera_pardus
ENSFDAG00000016578	-	86	63.902	ENSPPRG00000006957	-	73	70.861	Panthera_pardus
ENSFDAG00000016578	-	100	98.750	ENSPTIG00000004537	SNRPN	100	98.750	Panthera_tigris_altaica
ENSFDAG00000016578	-	100	99.583	ENSPTRG00000006826	SNRPN	100	99.583	Pan_troglodytes
ENSFDAG00000016578	-	97	69.828	ENSPTRG00000052400	-	64	81.560	Pan_troglodytes
ENSFDAG00000016578	-	100	99.583	ENSPANG00000020142	SNRPN	100	99.583	Papio_anubis
ENSFDAG00000016578	-	100	99.583	ENSPEMG00000012911	-	100	99.583	Peromyscus_maniculatus_bairdii
ENSFDAG00000016578	-	89	85.915	ENSPEMG00000013920	-	88	86.385	Peromyscus_maniculatus_bairdii
ENSFDAG00000016578	-	89	95.327	ENSPEMG00000020979	-	89	95.305	Peromyscus_maniculatus_bairdii
ENSFDAG00000016578	-	76	97.253	ENSPCIG00000004699	-	68	94.811	Phascolarctos_cinereus
ENSFDAG00000016578	-	72	93.642	ENSPMEG00000020674	SNRPN	69	93.452	Poecilia_mexicana
ENSFDAG00000016578	-	100	99.583	ENSPPYG00000006269	SNURF	100	99.583	Pongo_abelii
ENSFDAG00000016578	-	100	99.583	ENSPCOG00000014231	SNRPN	100	99.583	Propithecus_coquereli
ENSFDAG00000016578	-	100	99.583	ENSRNOG00000059764	Snrpn	100	99.583	Rattus_norvegicus
ENSFDAG00000016578	-	100	99.583	ENSRBIG00000041765	SNRPN	100	99.583	Rhinopithecus_bieti
ENSFDAG00000016578	-	100	99.583	ENSRROG00000035157	SNRPN	100	99.583	Rhinopithecus_roxellana
ENSFDAG00000016578	-	100	98.333	ENSSBOG00000024929	-	100	98.333	Saimiri_boliviensis_boliviensis
ENSFDAG00000016578	-	100	99.583	ENSSBOG00000000110	-	100	99.583	Saimiri_boliviensis_boliviensis
ENSFDAG00000016578	-	76	96.721	ENSSHAG00000010257	-	87	94.366	Sarcophilus_harrisii
ENSFDAG00000016578	-	99	78.243	ENSSARG00000000072	SNRPN	100	78.243	Sorex_araneus
ENSFDAG00000016578	-	100	99.583	ENSSSCG00000028124	SNRPN	100	99.583	Sus_scrofa
ENSFDAG00000016578	-	100	99.167	ENSTTRG00000010966	SNRPN	89	99.167	Tursiops_truncatus
ENSFDAG00000016578	-	94	98.661	ENSUAMG00000016284	SNRPN	78	99.103	Ursus_americanus
ENSFDAG00000016578	-	100	99.167	ENSUMAG00000025589	SNRPN	100	99.167	Ursus_maritimus
ENSFDAG00000016578	-	95	99.127	ENSVVUG00000017971	SNRPN	94	99.127	Vulpes_vulpes