EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFDAG00000017388 (Gene tree)
Gene ID: 104876084
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 18688 bases
Position: chrKN123483.1:1118006-1136693
Accession: 104876084
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000009278	EST1	PF10374.9	6.2e-24	1	1
ENSFDAP00000009278	EST1_DNA_bind	PF10373.9	4.9e-40	1	1
ENSFDAP00000009278	PIN_4	PF13638.6	1.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000022284	SMG5-201	2979	XM_010643980	ENSFDAP00000009278	992 (aa)	XP_019066149	-

Gene Model

Click here to download ENSFDAG00000017388's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000017388's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000017388	SMG5	100	93.051	ENSG00000198952	SMG5	98	93.152	Homo_sapiens
ENSFDAG00000017388	SMG5	100	66.868	ENSAPOG00000019690	smg5	97	66.499	Acanthochromis_polyacanthus
ENSFDAG00000017388	SMG5	100	90.543	ENSAMEG00000014458	SMG5	99	90.644	Ailuropoda_melanoleuca
ENSFDAG00000017388	SMG5	100	64.418	ENSACIG00000001353	smg5	98	65.815	Amphilophus_citrinellus
ENSFDAG00000017388	SMG5	100	65.050	ENSAOCG00000019483	smg5	96	65.343	Amphiprion_ocellaris
ENSFDAG00000017388	SMG5	100	66.434	ENSAPEG00000022949	smg5	98	65.842	Amphiprion_percula
ENSFDAG00000017388	SMG5	100	65.290	ENSATEG00000005348	smg5	98	65.947	Anabas_testudineus
ENSFDAG00000017388	SMG5	100	77.388	ENSAPLG00000010263	SMG5	99	77.290	Anas_platyrhynchos
ENSFDAG00000017388	SMG5	100	92.649	ENSANAG00000032899	SMG5	99	92.749	Aotus_nancymaae
ENSFDAG00000017388	SMG5	100	64.090	ENSACLG00000009311	smg5	98	65.157	Astatotilapia_calliptera
ENSFDAG00000017388	SMG5	99	43.508	ENSBTAG00000021747	-	97	43.310	Bos_taurus
ENSFDAG00000017388	SMG5	100	92.346	ENSBTAG00000009435	SMG5	98	92.447	Bos_taurus
ENSFDAG00000017388	SMG5	100	92.649	ENSCJAG00000005684	SMG5	98	92.749	Callithrix_jacchus
ENSFDAG00000017388	SMG5	100	91.633	ENSCAFG00000016839	SMG5	98	91.734	Canis_familiaris
ENSFDAG00000017388	SMG5	100	91.633	ENSCAFG00020006061	SMG5	98	91.734	Canis_lupus_dingo
ENSFDAG00000017388	SMG5	99	43.731	ENSCHIG00000006323	-	98	43.435	Capra_hircus
ENSFDAG00000017388	SMG5	100	91.944	ENSCHIG00000007709	SMG5	98	92.044	Capra_hircus
ENSFDAG00000017388	SMG5	100	91.650	ENSTSYG00000004099	SMG5	98	92.656	Carlito_syrichta
ENSFDAG00000017388	SMG5	99	73.022	ENSCAPG00000003631	SMG5	100	72.917	Cavia_aperea
ENSFDAG00000017388	SMG5	100	94.260	ENSCPOG00000015696	SMG5	98	94.260	Cavia_porcellus
ENSFDAG00000017388	SMG5	100	92.649	ENSCCAG00000027409	SMG5	99	92.749	Cebus_capucinus
ENSFDAG00000017388	SMG5	100	93.051	ENSCATG00000030539	SMG5	98	93.152	Cercocebus_atys
ENSFDAG00000017388	SMG5	100	94.763	ENSCLAG00000003983	SMG5	98	94.763	Chinchilla_lanigera
ENSFDAG00000017388	SMG5	100	92.951	ENSCSAG00000002120	SMG5	98	93.051	Chlorocebus_sabaeus
ENSFDAG00000017388	SMG5	56	87.004	ENSCHOG00000008741	-	57	87.004	Choloepus_hoffmanni
ENSFDAG00000017388	SMG5	96	75.862	ENSCPBG00000025848	SMG5	100	76.619	Chrysemys_picta_bellii
ENSFDAG00000017388	SMG5	94	35.036	ENSCING00000008706	-	97	34.304	Ciona_intestinalis
ENSFDAG00000017388	SMG5	100	89.325	ENSCANG00000029208	SMG5	98	89.527	Colobus_angolensis_palliatus
ENSFDAG00000017388	SMG5	100	90.131	ENSCGRG00001006336	Smg5	98	90.332	Cricetulus_griseus_chok1gshd
ENSFDAG00000017388	SMG5	100	90.131	ENSCGRG00000005111	Smg5	100	90.332	Cricetulus_griseus_crigri
ENSFDAG00000017388	SMG5	100	64.665	ENSCSEG00000014220	smg5	98	65.065	Cynoglossus_semilaevis
ENSFDAG00000017388	SMG5	100	59.322	ENSCVAG00000000529	smg5	97	59.661	Cyprinodon_variegatus
ENSFDAG00000017388	SMG5	95	35.813	ENSDNOG00000039862	-	100	34.963	Dasypus_novemcinctus
ENSFDAG00000017388	SMG5	100	89.012	ENSDNOG00000000051	SMG5	98	89.113	Dasypus_novemcinctus
ENSFDAG00000017388	SMG5	100	92.455	ENSDORG00000010382	Smg5	98	92.254	Dipodomys_ordii
ENSFDAG00000017388	SMG5	71	31.771	FBgn0019890	Smg5	64	31.771	Drosophila_melanogaster
ENSFDAG00000017388	SMG5	82	95.146	ENSETEG00000010336	SMG5	88	95.146	Echinops_telfairi
ENSFDAG00000017388	SMG5	93	48.514	ENSEBUG00000003739	smg5	98	48.562	Eptatretus_burgeri
ENSFDAG00000017388	SMG5	100	92.850	ENSEASG00005019122	SMG5	98	92.951	Equus_asinus_asinus
ENSFDAG00000017388	SMG5	100	92.850	ENSECAG00000001389	SMG5	98	92.951	Equus_caballus
ENSFDAG00000017388	SMG5	74	97.406	ENSEEUG00000012690	SMG5	73	97.406	Erinaceus_europaeus
ENSFDAG00000017388	SMG5	100	64.637	ENSELUG00000012585	smg5	98	64.828	Esox_lucius
ENSFDAG00000017388	SMG5	100	91.835	ENSFCAG00000011783	SMG5	98	91.835	Felis_catus
ENSFDAG00000017388	SMG5	60	80.167	ENSFALG00000001166	-	99	80.100	Ficedula_albicollis
ENSFDAG00000017388	SMG5	99	61.818	ENSFHEG00000013939	smg5	95	68.126	Fundulus_heteroclitus
ENSFDAG00000017388	SMG5	100	60.811	ENSGMOG00000007310	smg5	98	60.870	Gadus_morhua
ENSFDAG00000017388	SMG5	100	75.926	ENSGALG00000029918	-	98	75.828	Gallus_gallus
ENSFDAG00000017388	SMG5	52	52.662	ENSGAFG00000021691	smg5	94	65.495	Gambusia_affinis
ENSFDAG00000017388	SMG5	100	77.745	ENSGAGG00000016131	SMG5	98	77.745	Gopherus_agassizii
ENSFDAG00000017388	SMG5	100	92.951	ENSGGOG00000010932	SMG5	98	93.051	Gorilla_gorilla
ENSFDAG00000017388	SMG5	100	63.583	ENSHBUG00000008654	smg5	98	64.202	Haplochromis_burtoni
ENSFDAG00000017388	SMG5	100	94.562	ENSHGLG00000019152	SMG5	98	94.562	Heterocephalus_glaber_female
ENSFDAG00000017388	SMG5	90	94.743	ENSHGLG00100015948	SMG5	97	94.743	Heterocephalus_glaber_male
ENSFDAG00000017388	SMG5	87	73.515	ENSHCOG00000010229	smg5	92	73.020	Hippocampus_comes
ENSFDAG00000017388	SMG5	100	61.538	ENSIPUG00000006624	Smg5	98	62.210	Ictalurus_punctatus
ENSFDAG00000017388	SMG5	100	93.555	ENSSTOG00000001780	SMG5	98	93.863	Ictidomys_tridecemlineatus
ENSFDAG00000017388	SMG5	100	90.754	ENSJJAG00000022763	Smg5	98	91.055	Jaculus_jaculus
ENSFDAG00000017388	SMG5	52	59.124	ENSKMAG00000014586	smg5	98	60.799	Kryptolebias_marmoratus
ENSFDAG00000017388	SMG5	100	65.582	ENSLBEG00000002145	smg5	97	65.582	Labrus_bergylta
ENSFDAG00000017388	SMG5	99	64.907	ENSLACG00000010521	SMG5	97	64.971	Latimeria_chalumnae
ENSFDAG00000017388	SMG5	100	92.548	ENSLAFG00000006241	SMG5	98	92.548	Loxodonta_africana
ENSFDAG00000017388	SMG5	100	92.951	ENSMFAG00000045357	SMG5	98	93.051	Macaca_fascicularis
ENSFDAG00000017388	SMG5	100	92.951	ENSMMUG00000000090	SMG5	98	93.051	Macaca_mulatta
ENSFDAG00000017388	SMG5	100	92.850	ENSMNEG00000044425	SMG5	98	92.951	Macaca_nemestrina
ENSFDAG00000017388	SMG5	100	86.660	ENSMLEG00000041192	SMG5	97	86.861	Mandrillus_leucophaeus
ENSFDAG00000017388	SMG5	100	61.692	ENSMAMG00000010683	smg5	100	61.248	Mastacembelus_armatus
ENSFDAG00000017388	SMG5	100	62.902	ENSMZEG00005015815	smg5	98	63.389	Maylandia_zebra
ENSFDAG00000017388	SMG5	64	58.234	ENSMZEG00005016543	smg5	100	58.974	Maylandia_zebra
ENSFDAG00000017388	SMG5	56	44.406	ENSMAUG00000000043	-	96	44.231	Mesocricetus_auratus
ENSFDAG00000017388	SMG5	100	89.225	ENSMAUG00000010381	Smg5	98	89.627	Mesocricetus_auratus
ENSFDAG00000017388	SMG5	100	93.051	ENSMICG00000002257	SMG5	98	93.152	Microcebus_murinus
ENSFDAG00000017388	SMG5	100	88.330	ENSMOCG00000016590	Smg5	98	88.844	Microtus_ochrogaster
ENSFDAG00000017388	SMG5	100	58.807	ENSMMOG00000017199	smg5	98	59.361	Mola_mola
ENSFDAG00000017388	SMG5	80	39.370	ENSMODG00000004735	-	89	39.467	Monodelphis_domestica
ENSFDAG00000017388	SMG5	87	87.963	ENSMODG00000016901	SMG5	95	87.731	Monodelphis_domestica
ENSFDAG00000017388	SMG5	80	37.280	ENSMODG00000010675	-	86	37.401	Monodelphis_domestica
ENSFDAG00000017388	SMG5	81	37.717	ENSMODG00000004532	-	84	37.600	Monodelphis_domestica
ENSFDAG00000017388	SMG5	99	34.843	ENSMODG00000004511	-	99	34.752	Monodelphis_domestica
ENSFDAG00000017388	SMG5	100	60.419	ENSMALG00000010375	smg5	98	60.291	Monopterus_albus
ENSFDAG00000017388	SMG5	100	90.030	MGP_CAROLIEiJ_G0025163	Smg5	100	98.324	Mus_caroli
ENSFDAG00000017388	SMG5	100	90.232	ENSMUSG00000001415	Smg5	99	98.324	Mus_musculus
ENSFDAG00000017388	SMG5	100	89.839	MGP_PahariEiJ_G0026606	Smg5	100	99.441	Mus_pahari
ENSFDAG00000017388	SMG5	100	90.030	MGP_SPRETEiJ_G0026104	Smg5	100	98.324	Mus_spretus
ENSFDAG00000017388	SMG5	96	90.326	ENSMPUG00000004546	SMG5	100	90.431	Mustela_putorius_furo
ENSFDAG00000017388	SMG5	100	91.775	ENSMLUG00000008518	SMG5	98	91.775	Myotis_lucifugus
ENSFDAG00000017388	SMG5	100	91.339	ENSNGAG00000020706	Smg5	98	91.239	Nannospalax_galili
ENSFDAG00000017388	SMG5	97	62.883	ENSNBRG00000004332	smg5	96	63.804	Neolamprologus_brichardi
ENSFDAG00000017388	SMG5	100	92.649	ENSNLEG00000012439	SMG5	98	92.749	Nomascus_leucogenys
ENSFDAG00000017388	SMG5	100	86.203	ENSMEUG00000012834	SMG5	98	84.693	Notamacropus_eugenii
ENSFDAG00000017388	SMG5	100	91.339	ENSOPRG00000009152	SMG5	98	91.440	Ochotona_princeps
ENSFDAG00000017388	SMG5	100	93.857	ENSODEG00000012237	SMG5	98	93.857	Octodon_degus
ENSFDAG00000017388	SMG5	100	59.692	ENSONIG00000008632	smg5	98	60.834	Oreochromis_niloticus
ENSFDAG00000017388	SMG5	100	92.649	ENSOCUG00000012886	SMG5	99	92.749	Oryctolagus_cuniculus
ENSFDAG00000017388	SMG5	90	40.622	ENSOCUG00000023338	-	97	40.289	Oryctolagus_cuniculus
ENSFDAG00000017388	SMG5	100	64.513	ENSORLG00020013127	smg5	97	65.737	Oryzias_latipes_hni
ENSFDAG00000017388	SMG5	100	64.222	ENSORLG00015019014	smg5	97	65.442	Oryzias_latipes_hsok
ENSFDAG00000017388	SMG5	54	69.762	ENSOMEG00000021330	smg5	90	59.934	Oryzias_melastigma
ENSFDAG00000017388	SMG5	100	92.246	ENSOGAG00000004966	SMG5	98	92.346	Otolemur_garnettii
ENSFDAG00000017388	SMG5	99	43.941	ENSOARG00000011963	-	97	43.251	Ovis_aries
ENSFDAG00000017388	SMG5	100	92.044	ENSOARG00000005778	SMG5	98	92.145	Ovis_aries
ENSFDAG00000017388	SMG5	100	92.850	ENSPPAG00000011996	SMG5	98	92.951	Pan_paniscus
ENSFDAG00000017388	SMG5	100	91.935	ENSPPRG00000011901	SMG5	99	91.935	Panthera_pardus
ENSFDAG00000017388	SMG5	99	85.423	ENSPTIG00000007892	SMG5	98	85.219	Panthera_tigris_altaica
ENSFDAG00000017388	SMG5	100	93.051	ENSPTRG00000023925	SMG5	98	93.152	Pan_troglodytes
ENSFDAG00000017388	SMG5	100	93.051	ENSPTRG00000049282	-	98	93.152	Pan_troglodytes
ENSFDAG00000017388	SMG5	100	93.051	ENSPANG00000011201	SMG5	98	93.152	Papio_anubis
ENSFDAG00000017388	SMG5	100	65.408	ENSPKIG00000009402	smg5	98	65.938	Paramormyrops_kingsleyae
ENSFDAG00000017388	SMG5	100	78.119	ENSPSIG00000015198	SMG5	99	78.515	Pelodiscus_sinensis
ENSFDAG00000017388	SMG5	100	60.918	ENSPMGG00000010465	smg5	98	60.654	Periophthalmus_magnuspinnatus
ENSFDAG00000017388	SMG5	100	90.030	ENSPEMG00000001819	Smg5	98	90.232	Peromyscus_maniculatus_bairdii
ENSFDAG00000017388	SMG5	57	45.423	ENSPEMG00000010022	-	94	44.991	Peromyscus_maniculatus_bairdii
ENSFDAG00000017388	SMG5	100	50.195	ENSPMAG00000000410	smg5	98	50.921	Petromyzon_marinus
ENSFDAG00000017388	SMG5	100	87.525	ENSPCIG00000018938	SMG5	98	87.324	Phascolarctos_cinereus
ENSFDAG00000017388	SMG5	100	65.426	ENSPMEG00000014105	smg5	98	65.561	Poecilia_mexicana
ENSFDAG00000017388	SMG5	93	70.244	ENSPREG00000017713	smg5	98	61.623	Poecilia_reticulata
ENSFDAG00000017388	SMG5	100	93.152	ENSPPYG00000000723	SMG5	98	93.253	Pongo_abelii
ENSFDAG00000017388	SMG5	71	98.883	ENSPCAG00000008412	SMG5	75	98.883	Procavia_capensis
ENSFDAG00000017388	SMG5	100	93.353	ENSPCOG00000004741	SMG5	98	93.454	Propithecus_coquereli
ENSFDAG00000017388	SMG5	100	84.491	ENSPVAG00000016748	SMG5	98	84.391	Pteropus_vampyrus
ENSFDAG00000017388	SMG5	91	65.000	ENSPNYG00000013397	smg5	98	60.614	Pundamilia_nyererei
ENSFDAG00000017388	SMG5	100	62.280	ENSPNAG00000028363	smg5	98	62.732	Pygocentrus_nattereri
ENSFDAG00000017388	SMG5	100	90.131	ENSRNOG00000019590	Smg5	98	90.332	Rattus_norvegicus
ENSFDAG00000017388	SMG5	100	92.951	ENSRBIG00000027428	SMG5	98	93.051	Rhinopithecus_bieti
ENSFDAG00000017388	SMG5	100	92.850	ENSRROG00000030035	SMG5	98	92.951	Rhinopithecus_roxellana
ENSFDAG00000017388	SMG5	100	92.850	ENSSBOG00000033339	SMG5	98	92.951	Saimiri_boliviensis_boliviensis
ENSFDAG00000017388	SMG5	65	39.766	ENSSHAG00000000935	-	91	40.854	Sarcophilus_harrisii
ENSFDAG00000017388	SMG5	99	33.400	ENSSHAG00000009572	-	76	43.850	Sarcophilus_harrisii
ENSFDAG00000017388	SMG5	88	39.108	ENSSHAG00000000561	-	96	39.108	Sarcophilus_harrisii
ENSFDAG00000017388	SMG5	100	86.787	ENSSHAG00000014163	SMG5	99	86.587	Sarcophilus_harrisii
ENSFDAG00000017388	SMG5	100	65.875	ENSSFOG00015024175	smg5	98	65.647	Scleropages_formosus
ENSFDAG00000017388	SMG5	100	60.631	ENSSMAG00000013059	smg5	98	61.328	Scophthalmus_maximus
ENSFDAG00000017388	SMG5	100	60.737	ENSSDUG00000007122	smg5	98	61.462	Seriola_dumerili
ENSFDAG00000017388	SMG5	100	61.066	ENSSLDG00000011418	smg5	98	61.685	Seriola_lalandi_dorsalis
ENSFDAG00000017388	SMG5	90	79.642	ENSSARG00000012484	SMG5	97	79.754	Sorex_araneus
ENSFDAG00000017388	SMG5	96	76.210	ENSSPUG00000002260	SMG5	100	75.907	Sphenodon_punctatus
ENSFDAG00000017388	SMG5	92	76.829	ENSSPAG00000014266	smg5	97	65.059	Stegastes_partitus
ENSFDAG00000017388	SMG5	100	93.454	ENSSSCG00000006490	-	100	93.277	Sus_scrofa
ENSFDAG00000017388	SMG5	100	71.573	ENSSSCG00000039308	-	97	72.407	Sus_scrofa
ENSFDAG00000017388	SMG5	53	35.860	ENSSSCG00000037182	-	82	37.037	Sus_scrofa
ENSFDAG00000017388	SMG5	100	78.800	ENSTGUG00000003748	-	97	78.700	Taeniopygia_guttata
ENSFDAG00000017388	SMG5	100	63.460	ENSTRUG00000012580	smg5	98	63.867	Takifugu_rubripes
ENSFDAG00000017388	SMG5	100	64.321	ENSTNIG00000010303	smg5	98	64.321	Tetraodon_nigroviridis
ENSFDAG00000017388	SMG5	59	99.015	ENSTBEG00000002777	SMG5	57	99.015	Tupaia_belangeri
ENSFDAG00000017388	SMG5	97	90.833	ENSTTRG00000001401	SMG5	94	91.042	Tursiops_truncatus
ENSFDAG00000017388	SMG5	100	91.230	ENSUAMG00000013721	SMG5	98	91.331	Ursus_americanus
ENSFDAG00000017388	SMG5	100	86.734	ENSUMAG00000018041	SMG5	97	86.834	Ursus_maritimus
ENSFDAG00000017388	SMG5	100	83.384	ENSVPAG00000009446	SMG5	99	83.585	Vicugna_pacos
ENSFDAG00000017388	SMG5	100	91.633	ENSVVUG00000005887	SMG5	98	91.734	Vulpes_vulpes
ENSFDAG00000017388	SMG5	79	64.956	ENSXETG00000033791	SMG5	99	65.075	Xenopus_tropicalis
ENSFDAG00000017388	SMG5	100	65.449	ENSXMAG00000013499	smg5	98	65.354	Xiphophorus_maculatus