EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFDAG00000019606 (Gene tree)
Gene ID: 104872516
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Minus strand
Length: 1113 bases
Position: chrKN123021.1:739193-740305
Accession: 104872516
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000012227	RRM_5	PF13893.6	6.2e-12	1	2
ENSFDAP00000012227	RRM_5	PF13893.6	6.2e-12	2	2
ENSFDAP00000012227	RRM_1	PF00076.22	1.3e-82	1	4
ENSFDAP00000012227	RRM_1	PF00076.22	1.3e-82	2	4
ENSFDAP00000012227	RRM_1	PF00076.22	1.3e-82	3	4
ENSFDAP00000012227	RRM_1	PF00076.22	1.3e-82	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000024900	PABPC4L-201	1113	XM_010638762	ENSFDAP00000012227	370 (aa)	XP_010637064	A0A091D9V0

Gene Model

Click here to download ENSFDAG00000019606's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000019606's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFDAG00000019606	PABPC4L	98	32.468	ENSFDAG00000014507	ELAVL4	71	32.468
ENSFDAG00000019606	PABPC4L	51	37.879	ENSFDAG00000011452	CELF3	52	37.879
ENSFDAG00000019606	PABPC4L	98	61.708	ENSFDAG00000008291	PABPC1L	63	61.708
ENSFDAG00000019606	PABPC4L	98	31.250	ENSFDAG00000021259	ELAVL1	94	31.250
ENSFDAG00000019606	PABPC4L	99	65.027	ENSFDAG00000018480	PABPC3	60	65.027
ENSFDAG00000019606	PABPC4L	85	39.474	ENSFDAG00000007909	RBM3	55	39.474
ENSFDAG00000019606	PABPC4L	98	59.551	ENSFDAG00000000126	PABPC5	96	59.615
ENSFDAG00000019606	PABPC4L	97	31.599	ENSFDAG00000014427	-	85	30.328
ENSFDAG00000019606	PABPC4L	96	61.735	ENSFDAG00000005484	-	98	61.735
ENSFDAG00000019606	PABPC4L	97	30.597	ENSFDAG00000003933	TIAL1	70	30.597
ENSFDAG00000019606	PABPC4L	98	68.197	ENSFDAG00000005583	PABPC1	56	68.197
ENSFDAG00000019606	PABPC4L	99	71.081	ENSFDAG00000020016	-	58	71.081

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000019606	PABPC4L	99	83.740	ENSG00000254535	PABPC4L	99	83.740	Homo_sapiens
ENSFDAG00000019606	PABPC4L	99	83.198	ENSANAG00000017199	PABPC4L	86	83.198	Aotus_nancymaae
ENSFDAG00000019606	PABPC4L	100	81.081	ENSBTAG00000046902	PABPC4L	100	81.081	Bos_taurus
ENSFDAG00000019606	PABPC4L	99	82.927	ENSCJAG00000045332	PABPC4L	86	82.927	Callithrix_jacchus
ENSFDAG00000019606	PABPC4L	99	73.913	ENSCAFG00020019182	-	54	73.913	Canis_lupus_dingo
ENSFDAG00000019606	PABPC4L	100	81.081	ENSCHIG00000007231	PABPC4L	100	81.081	Capra_hircus
ENSFDAG00000019606	PABPC4L	98	83.234	ENSCAPG00000000555	PABPC4L	100	83.234	Cavia_aperea
ENSFDAG00000019606	PABPC4L	99	80.217	ENSCPOG00000033167	PABPC4L	100	80.217	Cavia_porcellus
ENSFDAG00000019606	PABPC4L	99	82.656	ENSCCAG00000031681	PABPC4L	86	82.656	Cebus_capucinus
ENSFDAG00000019606	PABPC4L	99	82.927	ENSCLAG00000017628	PABPC4L	99	82.927	Chinchilla_lanigera
ENSFDAG00000019606	PABPC4L	99	82.656	ENSCANG00000037677	PABPC4L	99	82.656	Colobus_angolensis_palliatus
ENSFDAG00000019606	PABPC4L	99	74.526	ENSCGRG00001002070	Pabpc4l	99	74.526	Cricetulus_griseus_chok1gshd
ENSFDAG00000019606	PABPC4L	99	74.526	ENSCGRG00000020086	Pabpc4l	99	74.526	Cricetulus_griseus_crigri
ENSFDAG00000019606	PABPC4L	99	82.114	ENSDNOG00000031077	PABPC4L	95	82.114	Dasypus_novemcinctus
ENSFDAG00000019606	PABPC4L	100	79.459	ENSEASG00005007883	PABPC4L	100	79.459	Equus_asinus_asinus
ENSFDAG00000019606	PABPC4L	100	79.730	ENSECAG00000031416	PABPC4L	100	79.730	Equus_caballus
ENSFDAG00000019606	PABPC4L	100	81.351	ENSFCAG00000028270	PABPC4L	100	81.351	Felis_catus
ENSFDAG00000019606	PABPC4L	99	83.469	ENSGGOG00000024991	PABPC4L	99	83.469	Gorilla_gorilla
ENSFDAG00000019606	PABPC4L	100	90.541	ENSHGLG00000020104	PABPC4L	100	90.541	Heterocephalus_glaber_female
ENSFDAG00000019606	PABPC4L	100	90.541	ENSHGLG00100020648	PABPC4L	100	90.541	Heterocephalus_glaber_male
ENSFDAG00000019606	PABPC4L	99	78.108	ENSSTOG00000019472	PABPC4L	99	78.108	Ictidomys_tridecemlineatus
ENSFDAG00000019606	PABPC4L	100	75.405	ENSJJAG00000004090	Pabpc4l	100	75.405	Jaculus_jaculus
ENSFDAG00000019606	PABPC4L	99	74.797	ENSMAUG00000016313	Pabpc4l	99	74.797	Mesocricetus_auratus
ENSFDAG00000019606	PABPC4L	99	84.011	ENSMICG00000029683	PABPC4L	99	84.011	Microcebus_murinus
ENSFDAG00000019606	PABPC4L	99	76.423	ENSMOCG00000007551	Pabpc4l	99	76.423	Microtus_ochrogaster
ENSFDAG00000019606	PABPC4L	99	74.419	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	74.419	Mus_caroli
ENSFDAG00000019606	PABPC4L	99	73.256	ENSMUSG00000090919	Pabpc4l	100	73.256	Mus_musculus
ENSFDAG00000019606	PABPC4L	99	73.837	MGP_PahariEiJ_G0026409	Pabpc4l	100	73.837	Mus_pahari
ENSFDAG00000019606	PABPC4L	99	72.674	MGP_SPRETEiJ_G0025903	Pabpc4l	100	72.674	Mus_spretus
ENSFDAG00000019606	PABPC4L	99	73.984	ENSMLUG00000008254	PABPC4L	99	73.984	Myotis_lucifugus
ENSFDAG00000019606	PABPC4L	99	79.675	ENSNGAG00000001502	Pabpc4l	99	79.675	Nannospalax_galili
ENSFDAG00000019606	PABPC4L	99	83.469	ENSNLEG00000019300	PABPC4L	99	83.469	Nomascus_leucogenys
ENSFDAG00000019606	PABPC4L	99	77.236	ENSOGAG00000026166	PABPC4L	99	77.236	Otolemur_garnettii
ENSFDAG00000019606	PABPC4L	99	84.211	ENSPPAG00000043745	PABPC4L	93	84.211	Pan_paniscus
ENSFDAG00000019606	PABPC4L	100	80.811	ENSPPRG00000018628	PABPC4L	100	80.811	Panthera_pardus
ENSFDAG00000019606	PABPC4L	100	81.351	ENSPTIG00000010106	PABPC4L	100	81.351	Panthera_tigris_altaica
ENSFDAG00000019606	PABPC4L	99	84.211	ENSPTRG00000045513	-	76	84.211	Pan_troglodytes
ENSFDAG00000019606	PABPC4L	99	75.339	ENSPEMG00000012565	Pabpc4l	99	75.339	Peromyscus_maniculatus_bairdii
ENSFDAG00000019606	PABPC4L	99	82.927	ENSPCOG00000025578	PABPC4L	99	82.927	Propithecus_coquereli
ENSFDAG00000019606	PABPC4L	99	73.984	ENSRNOG00000029749	Pabpc4l	99	73.984	Rattus_norvegicus
ENSFDAG00000019606	PABPC4L	99	82.385	ENSRBIG00000030229	PABPC4L	99	82.385	Rhinopithecus_bieti
ENSFDAG00000019606	PABPC4L	99	82.114	ENSRROG00000020367	PABPC4L	99	82.114	Rhinopithecus_roxellana
ENSFDAG00000019606	PABPC4L	99	82.656	ENSSBOG00000016382	PABPC4L	99	82.656	Saimiri_boliviensis_boliviensis
ENSFDAG00000019606	PABPC4L	100	74.054	ENSSSCG00000009067	PABPC4L	100	74.054	Sus_scrofa
ENSFDAG00000019606	PABPC4L	100	79.730	ENSUAMG00000001289	PABPC4L	100	79.730	Ursus_americanus
ENSFDAG00000019606	PABPC4L	100	79.730	ENSUMAG00000014887	PABPC4L	100	79.730	Ursus_maritimus
ENSFDAG00000019606	PABPC4L	96	78.916	ENSVVUG00000011060	-	76	78.916	Vulpes_vulpes