EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFDAG00000020494 (Gene tree)
Gene ID: 104851032
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 124572 bases
Position: chrKN124268.1:2703475-2828046
Accession: 104851032
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000013058	XRN_N	PF03159.18	2.1e-96	1	1
ENSFDAP00000013102	XRN_N	PF03159.18	4.4e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000030574	XRN1-202	10006	XM_010608183	ENSFDAP00000013102	1733 (aa)	XP_010606485	A0A091CUZ0
ENSFDAT00000025824	XRN1-201	2910	-	ENSFDAP00000013058	969 (aa)	-	-

Gene Model

Click here to download ENSFDAG00000020494's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000020494's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFDAG00000020494	XRN1	61	38.710	ENSFDAG00000016311	XRN2	71	38.856

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000020494	XRN1	99	95.563	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSFDAG00000020494	XRN1	99	78.254	ENSAPOG00000000622	xrn1	100	69.492	Acanthochromis_polyacanthus
ENSFDAG00000020494	XRN1	99	95.087	ENSAMEG00000012538	XRN1	100	89.862	Ailuropoda_melanoleuca
ENSFDAG00000020494	XRN1	99	78.288	ENSACIG00000001057	xrn1	98	71.928	Amphilophus_citrinellus
ENSFDAG00000020494	XRN1	99	78.378	ENSAOCG00000014097	xrn1	96	70.654	Amphiprion_ocellaris
ENSFDAG00000020494	XRN1	99	78.378	ENSAPEG00000006620	xrn1	91	71.888	Amphiprion_percula
ENSFDAG00000020494	XRN1	99	76.032	ENSATEG00000009752	xrn1	100	68.213	Anabas_testudineus
ENSFDAG00000020494	XRN1	96	88.079	ENSAPLG00000004905	XRN1	100	75.203	Anas_platyrhynchos
ENSFDAG00000020494	XRN1	99	85.397	ENSACAG00000004985	XRN1	100	71.894	Anolis_carolinensis
ENSFDAG00000020494	XRN1	99	96.184	ENSANAG00000029013	XRN1	99	94.616	Aotus_nancymaae
ENSFDAG00000020494	XRN1	99	76.862	ENSACLG00000004806	xrn1	99	60.147	Astatotilapia_calliptera
ENSFDAG00000020494	XRN1	99	73.810	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSFDAG00000020494	XRN1	99	94.295	ENSBTAG00000011524	XRN1	100	87.342	Bos_taurus
ENSFDAG00000020494	XRN1	93	52.481	WBGene00012730	xrn-1	78	38.700	Caenorhabditis_elegans
ENSFDAG00000020494	XRN1	99	95.563	ENSCJAG00000001872	XRN1	100	88.748	Callithrix_jacchus
ENSFDAG00000020494	XRN1	99	95.087	ENSCAFG00000007783	XRN1	100	90.190	Canis_familiaris
ENSFDAG00000020494	XRN1	99	95.087	ENSCAFG00020009120	XRN1	99	95.796	Canis_lupus_dingo
ENSFDAG00000020494	XRN1	99	94.770	ENSCHIG00000019192	XRN1	99	89.775	Capra_hircus
ENSFDAG00000020494	XRN1	99	95.087	ENSTSYG00000002705	XRN1	100	89.036	Carlito_syrichta
ENSFDAG00000020494	XRN1	97	75.556	ENSCAPG00000004604	-	99	78.109	Cavia_aperea
ENSFDAG00000020494	XRN1	100	95.872	ENSCCAG00000034800	XRN1	100	95.872	Cebus_capucinus
ENSFDAG00000020494	XRN1	99	95.880	ENSCATG00000041794	XRN1	100	89.094	Cercocebus_atys
ENSFDAG00000020494	XRN1	100	97.420	ENSCLAG00000001451	XRN1	100	97.420	Chinchilla_lanigera
ENSFDAG00000020494	XRN1	99	96.038	ENSCSAG00000011265	XRN1	100	88.431	Chlorocebus_sabaeus
ENSFDAG00000020494	XRN1	57	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSFDAG00000020494	XRN1	84	61.538	ENSCSAVG00000008584	-	98	45.093	Ciona_savignyi
ENSFDAG00000020494	XRN1	100	95.975	ENSCANG00000037495	XRN1	100	95.975	Colobus_angolensis_palliatus
ENSFDAG00000020494	XRN1	100	94.737	ENSCGRG00001019411	Xrn1	100	94.737	Cricetulus_griseus_chok1gshd
ENSFDAG00000020494	XRN1	100	94.737	ENSCGRG00000012464	Xrn1	100	94.737	Cricetulus_griseus_crigri
ENSFDAG00000020494	XRN1	99	78.095	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSFDAG00000020494	XRN1	99	76.312	ENSCVAG00000013089	xrn1	99	71.919	Cyprinodon_variegatus
ENSFDAG00000020494	XRN1	99	79.715	ENSDARG00000091652	xrn1	98	79.536	Danio_rerio
ENSFDAG00000020494	XRN1	99	94.754	ENSDORG00000013833	Xrn1	100	86.494	Dipodomys_ordii
ENSFDAG00000020494	XRN1	96	53.997	FBgn0020261	pcm	76	39.782	Drosophila_melanogaster
ENSFDAG00000020494	XRN1	86	99.099	ENSETEG00000003978	XRN1	88	97.581	Echinops_telfairi
ENSFDAG00000020494	XRN1	100	95.150	ENSEASG00005002687	XRN1	100	95.150	Equus_asinus_asinus
ENSFDAG00000020494	XRN1	99	94.929	ENSECAG00000008301	XRN1	100	87.514	Equus_caballus
ENSFDAG00000020494	XRN1	84	95.972	ENSEEUG00000011323	XRN1	92	82.209	Erinaceus_europaeus
ENSFDAG00000020494	XRN1	99	78.639	ENSELUG00000000169	xrn1	95	62.507	Esox_lucius
ENSFDAG00000020494	XRN1	99	90.286	ENSFCAG00000027589	XRN1	99	95.165	Felis_catus
ENSFDAG00000020494	XRN1	99	87.917	ENSFALG00000007021	XRN1	100	73.808	Ficedula_albicollis
ENSFDAG00000020494	XRN1	50	70.686	ENSFHEG00000017356	-	98	70.062	Fundulus_heteroclitus
ENSFDAG00000020494	XRN1	99	76.948	ENSGMOG00000006396	xrn1	80	67.893	Gadus_morhua
ENSFDAG00000020494	XRN1	99	88.871	ENSGALG00000002706	XRN1	100	74.719	Gallus_gallus
ENSFDAG00000020494	XRN1	99	76.498	ENSGACG00000014328	xrn1	100	60.238	Gasterosteus_aculeatus
ENSFDAG00000020494	XRN1	99	88.095	ENSGAGG00000017535	XRN1	99	78.119	Gopherus_agassizii
ENSFDAG00000020494	XRN1	99	95.404	ENSGGOG00000008047	XRN1	100	88.979	Gorilla_gorilla
ENSFDAG00000020494	XRN1	99	75.277	ENSHBUG00000005908	xrn1	98	72.895	Haplochromis_burtoni
ENSFDAG00000020494	XRN1	99	98.140	ENSHGLG00000014476	XRN1	100	98.140	Heterocephalus_glaber_female
ENSFDAG00000020494	XRN1	99	98.140	ENSHGLG00100015130	XRN1	100	98.140	Heterocephalus_glaber_male
ENSFDAG00000020494	XRN1	99	75.846	ENSHCOG00000014062	xrn1	97	68.987	Hippocampus_comes
ENSFDAG00000020494	XRN1	99	79.206	ENSIPUG00000015229	xrn1	96	63.215	Ictalurus_punctatus
ENSFDAG00000020494	XRN1	99	96.066	ENSSTOG00000013552	XRN1	99	96.096	Ictidomys_tridecemlineatus
ENSFDAG00000020494	XRN1	97	93.856	ENSJJAG00000010863	Xrn1	100	93.856	Jaculus_jaculus
ENSFDAG00000020494	XRN1	99	77.583	ENSKMAG00000021356	xrn1	94	76.371	Kryptolebias_marmoratus
ENSFDAG00000020494	XRN1	99	77.901	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSFDAG00000020494	XRN1	99	83.810	ENSLACG00000009020	XRN1	100	68.409	Latimeria_chalumnae
ENSFDAG00000020494	XRN1	99	82.306	ENSLOCG00000007944	xrn1	100	64.229	Lepisosteus_oculatus
ENSFDAG00000020494	XRN1	99	95.072	ENSLAFG00000015426	XRN1	100	94.761	Loxodonta_africana
ENSFDAG00000020494	XRN1	99	95.721	ENSMFAG00000032599	XRN1	100	89.094	Macaca_fascicularis
ENSFDAG00000020494	XRN1	99	95.880	ENSMMUG00000014038	XRN1	100	89.152	Macaca_mulatta
ENSFDAG00000020494	XRN1	99	95.404	ENSMNEG00000034217	XRN1	100	88.921	Macaca_nemestrina
ENSFDAG00000020494	XRN1	99	78.095	ENSMAMG00000013219	xrn1	94	76.495	Mastacembelus_armatus
ENSFDAG00000020494	XRN1	99	77.021	ENSMZEG00005015099	xrn1	99	60.147	Maylandia_zebra
ENSFDAG00000020494	XRN1	97	84.653	ENSMGAG00000006333	XRN1	100	74.869	Meleagris_gallopavo
ENSFDAG00000020494	XRN1	99	95.246	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSFDAG00000020494	XRN1	100	93.602	ENSMOCG00000008665	Xrn1	100	93.602	Microtus_ochrogaster
ENSFDAG00000020494	XRN1	54	68.750	ENSMMOG00000020896	-	96	68.566	Mola_mola
ENSFDAG00000020494	XRN1	99	89.650	ENSMODG00000021236	XRN1	100	79.053	Monodelphis_domestica
ENSFDAG00000020494	XRN1	99	71.111	ENSMALG00000004098	xrn1	98	65.909	Monopterus_albus
ENSFDAG00000020494	XRN1	99	93.905	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSFDAG00000020494	XRN1	99	94.136	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSFDAG00000020494	XRN1	99	93.978	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSFDAG00000020494	XRN1	99	94.136	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSFDAG00000020494	XRN1	99	95.563	ENSMPUG00000012040	XRN1	100	87.743	Mustela_putorius_furo
ENSFDAG00000020494	XRN1	98	94.913	ENSMLUG00000016885	XRN1	100	87.832	Myotis_lucifugus
ENSFDAG00000020494	XRN1	99	91.909	ENSNGAG00000023964	Xrn1	100	91.909	Nannospalax_galili
ENSFDAG00000020494	XRN1	99	96.197	ENSNLEG00000004726	XRN1	100	89.152	Nomascus_leucogenys
ENSFDAG00000020494	XRN1	71	98.969	ENSMEUG00000014473	-	73	99.029	Notamacropus_eugenii
ENSFDAG00000020494	XRN1	74	89.130	ENSOPRG00000007337	-	78	83.573	Ochotona_princeps
ENSFDAG00000020494	XRN1	99	77.778	ENSONIG00000016673	xrn1	99	64.281	Oreochromis_niloticus
ENSFDAG00000020494	XRN1	86	88.306	ENSOANG00000006735	XRN1	100	75.356	Ornithorhynchus_anatinus
ENSFDAG00000020494	XRN1	99	95.880	ENSOCUG00000001861	XRN1	100	89.290	Oryctolagus_cuniculus
ENSFDAG00000020494	XRN1	99	78.145	ENSORLG00000013005	xrn1	97	72.071	Oryzias_latipes
ENSFDAG00000020494	XRN1	99	79.048	ENSORLG00020005559	xrn1	97	71.990	Oryzias_latipes_hni
ENSFDAG00000020494	XRN1	99	78.889	ENSORLG00015022523	xrn1	89	71.910	Oryzias_latipes_hsok
ENSFDAG00000020494	XRN1	99	78.537	ENSOMEG00000015397	xrn1	100	72.209	Oryzias_melastigma
ENSFDAG00000020494	XRN1	99	90.650	ENSOGAG00000000170	XRN1	100	85.452	Otolemur_garnettii
ENSFDAG00000020494	XRN1	99	94.929	ENSOARG00000006343	XRN1	99	89.450	Ovis_aries
ENSFDAG00000020494	XRN1	99	95.246	ENSPPAG00000010180	XRN1	100	88.863	Pan_paniscus
ENSFDAG00000020494	XRN1	99	95.253	ENSPPRG00000007125	XRN1	100	88.466	Panthera_pardus
ENSFDAG00000020494	XRN1	99	95.253	ENSPTIG00000021081	XRN1	100	88.466	Panthera_tigris_altaica
ENSFDAG00000020494	XRN1	99	95.246	ENSPTRG00000015482	XRN1	100	88.863	Pan_troglodytes
ENSFDAG00000020494	XRN1	99	95.880	ENSPANG00000010638	XRN1	100	89.036	Papio_anubis
ENSFDAG00000020494	XRN1	99	87.639	ENSPSIG00000018050	XRN1	100	76.484	Pelodiscus_sinensis
ENSFDAG00000020494	XRN1	99	73.967	ENSPMGG00000002648	xrn1	99	78.481	Periophthalmus_magnuspinnatus
ENSFDAG00000020494	XRN1	100	93.808	ENSPEMG00000020610	Xrn1	100	93.808	Peromyscus_maniculatus_bairdii
ENSFDAG00000020494	XRN1	92	58.962	ENSPMAG00000002975	xrn1	91	77.874	Petromyzon_marinus
ENSFDAG00000020494	XRN1	99	89.507	ENSPCIG00000028735	XRN1	100	88.843	Phascolarctos_cinereus
ENSFDAG00000020494	XRN1	99	78.110	ENSPFOG00000013932	xrn1	99	63.511	Poecilia_formosa
ENSFDAG00000020494	XRN1	99	78.413	ENSPLAG00000021653	xrn1	99	63.456	Poecilia_latipinna
ENSFDAG00000020494	XRN1	99	78.199	ENSPMEG00000003076	xrn1	95	63.625	Poecilia_mexicana
ENSFDAG00000020494	XRN1	99	77.918	ENSPREG00000021147	xrn1	99	69.479	Poecilia_reticulata
ENSFDAG00000020494	XRN1	99	95.880	ENSPPYG00000014172	XRN1	100	88.259	Pongo_abelii
ENSFDAG00000020494	XRN1	92	93.956	ENSPCAG00000005638	XRN1	96	80.435	Procavia_capensis
ENSFDAG00000020494	XRN1	100	95.872	ENSPCOG00000013089	XRN1	99	95.872	Propithecus_coquereli
ENSFDAG00000020494	XRN1	99	93.976	ENSPVAG00000016265	XRN1	93	90.468	Pteropus_vampyrus
ENSFDAG00000020494	XRN1	99	77.179	ENSPNYG00000010570	xrn1	98	70.491	Pundamilia_nyererei
ENSFDAG00000020494	XRN1	99	76.303	ENSPNAG00000023531	xrn1	96	61.345	Pygocentrus_nattereri
ENSFDAG00000020494	XRN1	99	93.978	ENSRNOG00000042951	Xrn1	100	87.205	Rattus_norvegicus
ENSFDAG00000020494	XRN1	99	96.197	ENSRBIG00000041227	XRN1	100	88.402	Rhinopithecus_bieti
ENSFDAG00000020494	XRN1	82	54.768	YGL173C	XRN1	73	54.768	Saccharomyces_cerevisiae
ENSFDAG00000020494	XRN1	99	95.721	ENSSBOG00000029561	XRN1	100	88.575	Saimiri_boliviensis_boliviensis
ENSFDAG00000020494	XRN1	96	89.439	ENSSHAG00000016207	XRN1	100	79.697	Sarcophilus_harrisii
ENSFDAG00000020494	XRN1	99	78.378	ENSSFOG00015024211	xrn1	97	62.954	Scleropages_formosus
ENSFDAG00000020494	XRN1	99	79.873	ENSSMAG00000016534	xrn1	98	72.097	Scophthalmus_maximus
ENSFDAG00000020494	XRN1	99	79.589	ENSSDUG00000010306	xrn1	97	71.776	Seriola_dumerili
ENSFDAG00000020494	XRN1	99	79.589	ENSSLDG00000021543	xrn1	100	70.109	Seriola_lalandi_dorsalis
ENSFDAG00000020494	XRN1	89	91.391	ENSSARG00000007741	-	81	84.401	Sorex_araneus
ENSFDAG00000020494	XRN1	50	76.471	ENSSPAG00000009856	-	96	76.673	Stegastes_partitus
ENSFDAG00000020494	XRN1	99	87.917	ENSTGUG00000008498	XRN1	100	75.243	Taeniopygia_guttata
ENSFDAG00000020494	XRN1	99	77.193	ENSTRUG00000004895	xrn1	96	77.612	Takifugu_rubripes
ENSFDAG00000020494	XRN1	97	76.442	ENSTNIG00000017615	xrn1	97	58.548	Tetraodon_nigroviridis
ENSFDAG00000020494	XRN1	99	86.560	ENSTBEG00000003256	XRN1	84	97.305	Tupaia_belangeri
ENSFDAG00000020494	XRN1	99	94.880	ENSTTRG00000012914	XRN1	100	83.333	Tursiops_truncatus
ENSFDAG00000020494	XRN1	99	92.451	ENSUAMG00000001608	XRN1	99	92.451	Ursus_americanus
ENSFDAG00000020494	XRN1	99	95.404	ENSUMAG00000013625	XRN1	100	90.767	Ursus_maritimus
ENSFDAG00000020494	XRN1	99	95.246	ENSVPAG00000004690	XRN1	100	84.765	Vicugna_pacos
ENSFDAG00000020494	XRN1	99	95.868	ENSVVUG00000024461	XRN1	99	95.868	Vulpes_vulpes
ENSFDAG00000020494	XRN1	99	83.570	ENSXETG00000000619	xrn1	97	88.441	Xenopus_tropicalis
ENSFDAG00000020494	XRN1	99	77.742	ENSXCOG00000007917	xrn1	100	59.864	Xiphophorus_couchianus
ENSFDAG00000020494	XRN1	99	77.266	ENSXMAG00000018320	xrn1	98	71.964	Xiphophorus_maculatus