EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFDAG00000020816 (Gene tree)
Gene ID: 104855713
Gene Symbol: HFM1
Alias: FLJ36760|FLJ39011|MER3|SEC63D1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Fukomys_damarensis
Status: putative
Strand: Plus strand
Length: 97899 bases
Position: chrKN125242.1:26932-124830
Accession: 104855713
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFDAP00000022407	ResIII	PF04851.15	8.1e-12	1	1
ENSFDAP00000022407	DEAD	PF00270.29	5.8e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFDAT00000010153	HFM1-201	4858	XM_010614654	ENSFDAP00000022407	1485 (aa)	XP_010612956	UPI00053F9CE9

Gene Model

Click here to download ENSFDAG00000020816's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFDAG00000020816's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFDAG00000020816	HFM1	53	32.273	ENSFDAG00000004683	SNRNP200	66	32.112

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFDAG00000020816	HFM1	100	79.785	ENSG00000162669	HFM1	100	79.785	Homo_sapiens
ENSFDAG00000020816	HFM1	56	65.789	ENSAPOG00000005304	hfm1	94	65.789	Acanthochromis_polyacanthus
ENSFDAG00000020816	HFM1	100	78.725	ENSAMEG00000000432	HFM1	100	78.725	Ailuropoda_melanoleuca
ENSFDAG00000020816	HFM1	73	57.325	ENSACIG00000021553	hfm1	93	57.325	Amphilophus_citrinellus
ENSFDAG00000020816	HFM1	56	65.827	ENSAOCG00000022839	hfm1	96	68.056	Amphiprion_ocellaris
ENSFDAG00000020816	HFM1	56	65.707	ENSAPEG00000014316	hfm1	96	68.354	Amphiprion_percula
ENSFDAG00000020816	HFM1	82	54.452	ENSATEG00000019181	hfm1	99	54.452	Anabas_testudineus
ENSFDAG00000020816	HFM1	100	58.045	ENSAPLG00000013639	HFM1	100	58.045	Anas_platyrhynchos
ENSFDAG00000020816	HFM1	100	76.794	ENSANAG00000029513	HFM1	100	76.794	Aotus_nancymaae
ENSFDAG00000020816	HFM1	65	62.073	ENSACLG00000009033	hfm1	97	64.839	Astatotilapia_calliptera
ENSFDAG00000020816	HFM1	90	52.758	ENSAMXG00000006108	hfm1	92	52.758	Astyanax_mexicanus
ENSFDAG00000020816	HFM1	100	77.934	ENSBTAG00000020856	HFM1	100	77.934	Bos_taurus
ENSFDAG00000020816	HFM1	100	78.039	ENSCJAG00000001843	HFM1	100	78.039	Callithrix_jacchus
ENSFDAG00000020816	HFM1	99	80.586	ENSCAFG00000020187	HFM1	99	80.586	Canis_familiaris
ENSFDAG00000020816	HFM1	100	78.471	ENSTSYG00000014250	HFM1	100	78.471	Carlito_syrichta
ENSFDAG00000020816	HFM1	99	81.898	ENSCPOG00000007421	HFM1	99	81.898	Cavia_porcellus
ENSFDAG00000020816	HFM1	100	77.972	ENSCCAG00000033206	HFM1	100	77.972	Cebus_capucinus
ENSFDAG00000020816	HFM1	100	78.912	ENSCATG00000030987	HFM1	100	78.912	Cercocebus_atys
ENSFDAG00000020816	HFM1	100	88.560	ENSCLAG00000005173	HFM1	99	88.560	Chinchilla_lanigera
ENSFDAG00000020816	HFM1	61	88.158	ENSCHOG00000011824	-	71	88.158	Choloepus_hoffmanni
ENSFDAG00000020816	HFM1	100	69.385	ENSCGRG00001016995	Hfm1	100	69.385	Cricetulus_griseus_chok1gshd
ENSFDAG00000020816	HFM1	100	73.387	ENSCGRG00000017181	Hfm1	100	73.387	Cricetulus_griseus_crigri
ENSFDAG00000020816	HFM1	63	63.302	ENSCSEG00000017659	hfm1	87	63.119	Cynoglossus_semilaevis
ENSFDAG00000020816	HFM1	58	65.167	ENSDARG00000104288	hfm1	78	65.167	Danio_rerio
ENSFDAG00000020816	HFM1	100	78.270	ENSDNOG00000004776	HFM1	100	78.270	Dasypus_novemcinctus
ENSFDAG00000020816	HFM1	100	74.551	ENSDORG00000014661	Hfm1	100	74.551	Dipodomys_ordii
ENSFDAG00000020816	HFM1	71	82.119	ENSEASG00005015424	HFM1	97	82.119	Equus_asinus_asinus
ENSFDAG00000020816	HFM1	100	81.702	ENSECAG00000024039	HFM1	100	81.702	Equus_caballus
ENSFDAG00000020816	HFM1	61	66.593	ENSELUG00000018944	hfm1	97	66.593	Esox_lucius
ENSFDAG00000020816	HFM1	100	79.276	ENSFCAG00000029116	HFM1	100	79.276	Felis_catus
ENSFDAG00000020816	HFM1	100	57.039	ENSFALG00000001781	HFM1	100	57.483	Ficedula_albicollis
ENSFDAG00000020816	HFM1	64	60.187	ENSGMOG00000017436	hfm1	100	60.187	Gadus_morhua
ENSFDAG00000020816	HFM1	71	59.322	ENSGAFG00000018093	hfm1	94	65.472	Gambusia_affinis
ENSFDAG00000020816	HFM1	64	61.929	ENSGACG00000015686	hfm1	100	61.929	Gasterosteus_aculeatus
ENSFDAG00000020816	HFM1	100	79.785	ENSGGOG00000038524	HFM1	100	79.785	Gorilla_gorilla
ENSFDAG00000020816	HFM1	62	64.737	ENSHBUG00000007309	hfm1	94	59.643	Haplochromis_burtoni
ENSFDAG00000020816	HFM1	55	63.882	ENSHCOG00000019632	hfm1	97	63.882	Hippocampus_comes
ENSFDAG00000020816	HFM1	64	64.594	ENSIPUG00000017020	hfm1	92	65.476	Ictalurus_punctatus
ENSFDAG00000020816	HFM1	95	80.754	ENSJJAG00000017198	Hfm1	100	80.754	Jaculus_jaculus
ENSFDAG00000020816	HFM1	60	62.279	ENSKMAG00000002282	hfm1	90	62.348	Kryptolebias_marmoratus
ENSFDAG00000020816	HFM1	66	60.826	ENSLBEG00000006759	hfm1	97	65.595	Labrus_bergylta
ENSFDAG00000020816	HFM1	64	70.041	ENSLACG00000010698	HFM1	99	65.953	Latimeria_chalumnae
ENSFDAG00000020816	HFM1	73	62.477	ENSLOCG00000004931	hfm1	96	62.695	Lepisosteus_oculatus
ENSFDAG00000020816	HFM1	50	87.483	ENSLAFG00000015903	-	99	87.483	Loxodonta_africana
ENSFDAG00000020816	HFM1	100	76.305	ENSMFAG00000003649	HFM1	100	76.305	Macaca_fascicularis
ENSFDAG00000020816	HFM1	100	78.711	ENSMMUG00000006819	HFM1	100	78.711	Macaca_mulatta
ENSFDAG00000020816	HFM1	56	66.063	ENSMAMG00000004623	hfm1	97	66.063	Mastacembelus_armatus
ENSFDAG00000020816	HFM1	65	62.073	ENSMZEG00005004679	hfm1	97	64.839	Maylandia_zebra
ENSFDAG00000020816	HFM1	53	77.296	ENSMGAG00000008437	HFM1	98	77.296	Meleagris_gallopavo
ENSFDAG00000020816	HFM1	100	73.504	ENSMAUG00000018858	Hfm1	100	73.504	Mesocricetus_auratus
ENSFDAG00000020816	HFM1	100	79.195	ENSMICG00000037935	HFM1	100	79.195	Microcebus_murinus
ENSFDAG00000020816	HFM1	100	71.957	ENSMOCG00000014812	Hfm1	100	71.957	Microtus_ochrogaster
ENSFDAG00000020816	HFM1	60	64.126	ENSMMOG00000006148	hfm1	95	64.843	Mola_mola
ENSFDAG00000020816	HFM1	63	63.169	ENSMALG00000002401	hfm1	96	64.569	Monopterus_albus
ENSFDAG00000020816	HFM1	95	72.835	MGP_CAROLIEiJ_G0027496	Hfm1	100	72.835	Mus_caroli
ENSFDAG00000020816	HFM1	100	73.235	ENSMUSG00000043410	Hfm1	100	73.235	Mus_musculus
ENSFDAG00000020816	HFM1	100	73.705	MGP_PahariEiJ_G0017268	Hfm1	100	73.705	Mus_pahari
ENSFDAG00000020816	HFM1	100	72.966	MGP_SPRETEiJ_G0028495	Hfm1	100	72.966	Mus_spretus
ENSFDAG00000020816	HFM1	100	79.558	ENSMPUG00000004594	HFM1	100	79.558	Mustela_putorius_furo
ENSFDAG00000020816	HFM1	100	77.315	ENSMLUG00000010200	HFM1	100	77.315	Myotis_lucifugus
ENSFDAG00000020816	HFM1	66	58.529	ENSNBRG00000002910	hfm1	97	65.333	Neolamprologus_brichardi
ENSFDAG00000020816	HFM1	100	75.703	ENSNLEG00000010285	HFM1	100	75.703	Nomascus_leucogenys
ENSFDAG00000020816	HFM1	84	62.025	ENSMEUG00000015788	HFM1	84	62.025	Notamacropus_eugenii
ENSFDAG00000020816	HFM1	84	76.294	ENSOPRG00000013916	HFM1	84	76.294	Ochotona_princeps
ENSFDAG00000020816	HFM1	67	63.126	ENSONIG00000010590	hfm1	99	59.633	Oreochromis_niloticus
ENSFDAG00000020816	HFM1	55	65.105	ENSORLG00000026844	hfm1	99	65.105	Oryzias_latipes
ENSFDAG00000020816	HFM1	65	55.228	ENSORLG00020002951	hfm1	77	55.228	Oryzias_latipes_hni
ENSFDAG00000020816	HFM1	76	56.206	ENSOMEG00000016474	hfm1	78	56.206	Oryzias_melastigma
ENSFDAG00000020816	HFM1	83	83.077	ENSOGAG00000032369	HFM1	100	83.077	Otolemur_garnettii
ENSFDAG00000020816	HFM1	100	77.934	ENSOARG00000015812	HFM1	100	77.934	Ovis_aries
ENSFDAG00000020816	HFM1	93	81.060	ENSPPAG00000024582	HFM1	100	81.060	Pan_paniscus
ENSFDAG00000020816	HFM1	100	79.343	ENSPPRG00000003270	HFM1	100	79.343	Panthera_pardus
ENSFDAG00000020816	HFM1	100	79.209	ENSPTIG00000018881	HFM1	100	79.209	Panthera_tigris_altaica
ENSFDAG00000020816	HFM1	100	79.718	ENSPTRG00000000948	HFM1	100	79.718	Pan_troglodytes
ENSFDAG00000020816	HFM1	100	78.845	ENSPANG00000009838	HFM1	100	78.845	Papio_anubis
ENSFDAG00000020816	HFM1	60	67.562	ENSPKIG00000003810	hfm1	95	67.874	Paramormyrops_kingsleyae
ENSFDAG00000020816	HFM1	56	65.538	ENSPMGG00000011059	hfm1	100	65.538	Periophthalmus_magnuspinnatus
ENSFDAG00000020816	HFM1	100	74.580	ENSPEMG00000022852	Hfm1	100	74.580	Peromyscus_maniculatus_bairdii
ENSFDAG00000020816	HFM1	100	66.578	ENSPCIG00000014233	HFM1	100	66.578	Phascolarctos_cinereus
ENSFDAG00000020816	HFM1	71	60.967	ENSPFOG00000017194	hfm1	99	60.967	Poecilia_formosa
ENSFDAG00000020816	HFM1	63	65.632	ENSPLAG00000000571	hfm1	85	65.632	Poecilia_latipinna
ENSFDAG00000020816	HFM1	63	65.319	ENSPMEG00000019475	hfm1	86	65.319	Poecilia_mexicana
ENSFDAG00000020816	HFM1	71	59.679	ENSPREG00000007803	hfm1	94	65.072	Poecilia_reticulata
ENSFDAG00000020816	HFM1	100	79.584	ENSPPYG00000001163	HFM1	100	79.584	Pongo_abelii
ENSFDAG00000020816	HFM1	75	78.027	ENSPCAG00000004289	-	74	78.027	Procavia_capensis
ENSFDAG00000020816	HFM1	94	74.882	ENSPVAG00000009713	HFM1	100	68.792	Pteropus_vampyrus
ENSFDAG00000020816	HFM1	62	63.558	ENSPNYG00000001795	hfm1	97	64.839	Pundamilia_nyererei
ENSFDAG00000020816	HFM1	57	66.941	ENSPNAG00000010865	hfm1	84	66.941	Pygocentrus_nattereri
ENSFDAG00000020816	HFM1	100	72.159	ENSRNOG00000023299	Hfm1	100	72.159	Rattus_norvegicus
ENSFDAG00000020816	HFM1	100	78.979	ENSRROG00000045569	HFM1	100	78.979	Rhinopithecus_roxellana
ENSFDAG00000020816	HFM1	95	82.084	ENSSBOG00000027456	HFM1	99	82.084	Saimiri_boliviensis_boliviensis
ENSFDAG00000020816	HFM1	58	70.379	ENSSHAG00000014616	-	98	70.379	Sarcophilus_harrisii
ENSFDAG00000020816	HFM1	83	55.684	ENSSFOG00015020129	hfm1	84	55.684	Scleropages_formosus
ENSFDAG00000020816	HFM1	60	64.693	ENSSMAG00000006907	hfm1	87	64.693	Scophthalmus_maximus
ENSFDAG00000020816	HFM1	58	64.527	ENSSDUG00000011424	hfm1	96	64.527	Seriola_dumerili
ENSFDAG00000020816	HFM1	58	64.808	ENSSLDG00000016386	hfm1	96	64.808	Seriola_lalandi_dorsalis
ENSFDAG00000020816	HFM1	64	59.727	ENSSPAG00000001023	hfm1	94	66.067	Stegastes_partitus
ENSFDAG00000020816	HFM1	100	78.083	ENSSSCG00000006912	HFM1	100	78.083	Sus_scrofa
ENSFDAG00000020816	HFM1	64	75.444	ENSTGUG00000006172	HFM1	100	75.444	Taeniopygia_guttata
ENSFDAG00000020816	HFM1	100	73.790	ENSTTRG00000013933	HFM1	100	73.790	Tursiops_truncatus
ENSFDAG00000020816	HFM1	93	77.820	ENSVPAG00000011331	HFM1	93	77.820	Vicugna_pacos
ENSFDAG00000020816	HFM1	71	82.231	ENSVVUG00000020760	HFM1	99	82.231	Vulpes_vulpes
ENSFDAG00000020816	HFM1	56	66.344	ENSXMAG00000004178	hfm1	92	66.344	Xiphophorus_maculatus