EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000000202 (Gene tree)
Gene ID: 105937990
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 29224 bases
Position: chrKN811530.1:597831-627054
Accession: 105937990
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000025517	Npa1	PF11707.8	7.8e-75	1	1
ENSFHEP00000006697	Npa1	PF11707.8	1.2e-48	1	2
ENSFHEP00000006697	Npa1	PF11707.8	1.2e-48	2	2
ENSFHEP00000006613	Npa1	PF11707.8	8.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000005061	-	6372	-	ENSFHEP00000006697	2123 (aa)	-	-
ENSFHET00000005195	-	8616	-	ENSFHEP00000006613	1971 (aa)	-	-
ENSFHET00000005034	-	6507	XM_021325041	ENSFHEP00000025517	2168 (aa)	XP_021180716	-

Gene Model

Click here to download ENSFHEG00000000202's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000000202's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000000202	urb1	98	42.052	ENSG00000142207	URB1	99	41.225	Homo_sapiens
ENSFHEG00000000202	urb1	99	66.869	ENSAPOG00000020308	urb1	100	65.270	Acanthochromis_polyacanthus
ENSFHEG00000000202	urb1	99	42.921	ENSAMEG00000011998	URB1	99	41.950	Ailuropoda_melanoleuca
ENSFHEG00000000202	urb1	96	64.105	ENSACIG00000003248	urb1	95	62.839	Amphilophus_citrinellus
ENSFHEG00000000202	urb1	99	61.982	ENSAOCG00000010364	urb1	100	60.940	Amphiprion_ocellaris
ENSFHEG00000000202	urb1	96	69.800	ENSAPEG00000010758	urb1	100	61.710	Amphiprion_percula
ENSFHEG00000000202	urb1	99	68.867	ENSATEG00000011790	urb1	99	65.717	Anabas_testudineus
ENSFHEG00000000202	urb1	94	53.125	ENSAPLG00000012791	URB1	96	53.125	Anas_platyrhynchos
ENSFHEG00000000202	urb1	99	42.663	ENSACAG00000002817	URB1	99	42.034	Anolis_carolinensis
ENSFHEG00000000202	urb1	99	41.880	ENSANAG00000024617	URB1	99	41.426	Aotus_nancymaae
ENSFHEG00000000202	urb1	99	68.642	ENSACLG00000024865	urb1	100	65.286	Astatotilapia_calliptera
ENSFHEG00000000202	urb1	100	50.640	ENSAMXG00000012306	urb1	100	46.336	Astyanax_mexicanus
ENSFHEG00000000202	urb1	99	41.153	ENSBTAG00000012412	URB1	99	41.022	Bos_taurus
ENSFHEG00000000202	urb1	99	41.863	ENSCJAG00000009118	URB1	99	41.387	Callithrix_jacchus
ENSFHEG00000000202	urb1	99	41.929	ENSCAFG00000008892	URB1	99	41.292	Canis_familiaris
ENSFHEG00000000202	urb1	99	41.395	ENSCAFG00020025994	-	99	40.849	Canis_lupus_dingo
ENSFHEG00000000202	urb1	99	41.947	ENSCAFG00020025987	-	99	41.156	Canis_lupus_dingo
ENSFHEG00000000202	urb1	99	41.633	ENSCHIG00000015645	URB1	99	41.287	Capra_hircus
ENSFHEG00000000202	urb1	99	42.261	ENSTSYG00000013286	URB1	99	41.313	Carlito_syrichta
ENSFHEG00000000202	urb1	99	42.391	ENSCAPG00000015589	URB1	97	41.233	Cavia_aperea
ENSFHEG00000000202	urb1	99	42.290	ENSCPOG00000006748	URB1	99	41.437	Cavia_porcellus
ENSFHEG00000000202	urb1	99	41.910	ENSCCAG00000021299	URB1	99	41.514	Cebus_capucinus
ENSFHEG00000000202	urb1	99	42.190	ENSCATG00000042630	URB1	99	41.805	Cercocebus_atys
ENSFHEG00000000202	urb1	99	43.328	ENSCLAG00000005262	URB1	99	42.377	Chinchilla_lanigera
ENSFHEG00000000202	urb1	99	42.290	ENSCSAG00000009584	URB1	99	41.358	Chlorocebus_sabaeus
ENSFHEG00000000202	urb1	99	44.367	ENSCPBG00000006454	URB1	99	43.522	Chrysemys_picta_bellii
ENSFHEG00000000202	urb1	99	42.499	ENSCANG00000031088	URB1	99	42.082	Colobus_angolensis_palliatus
ENSFHEG00000000202	urb1	99	42.177	ENSCGRG00001010616	Urb1	99	41.151	Cricetulus_griseus_chok1gshd
ENSFHEG00000000202	urb1	99	42.089	ENSCGRG00000015840	Urb1	98	41.818	Cricetulus_griseus_crigri
ENSFHEG00000000202	urb1	99	61.701	ENSCSEG00000012616	urb1	99	60.738	Cynoglossus_semilaevis
ENSFHEG00000000202	urb1	91	81.076	ENSCVAG00000009076	urb1	99	75.630	Cyprinodon_variegatus
ENSFHEG00000000202	urb1	99	50.557	ENSDARG00000060308	urb1	99	50.419	Danio_rerio
ENSFHEG00000000202	urb1	85	44.359	ENSDNOG00000015586	URB1	99	44.308	Dasypus_novemcinctus
ENSFHEG00000000202	urb1	99	42.285	ENSDORG00000006735	Urb1	99	41.550	Dipodomys_ordii
ENSFHEG00000000202	urb1	91	53.160	ENSETEG00000009080	URB1	87	53.160	Echinops_telfairi
ENSFHEG00000000202	urb1	94	48.993	ENSEASG00005007711	URB1	99	41.705	Equus_asinus_asinus
ENSFHEG00000000202	urb1	92	54.905	ENSECAG00000013206	URB1	99	49.943	Equus_caballus
ENSFHEG00000000202	urb1	52	57.917	ENSEEUG00000003626	-	53	57.917	Erinaceus_europaeus
ENSFHEG00000000202	urb1	99	54.719	ENSELUG00000020516	urb1	99	54.941	Esox_lucius
ENSFHEG00000000202	urb1	99	42.470	ENSFCAG00000002177	URB1	99	41.714	Felis_catus
ENSFHEG00000000202	urb1	99	40.030	ENSFALG00000004636	URB1	98	39.532	Ficedula_albicollis
ENSFHEG00000000202	urb1	99	42.757	ENSFDAG00000007288	URB1	95	41.822	Fukomys_damarensis
ENSFHEG00000000202	urb1	93	55.023	ENSGMOG00000001838	urb1	94	53.111	Gadus_morhua
ENSFHEG00000000202	urb1	98	44.754	ENSGALG00000015887	URB1	99	42.404	Gallus_gallus
ENSFHEG00000000202	urb1	99	74.924	ENSGAFG00000020694	urb1	99	73.196	Gambusia_affinis
ENSFHEG00000000202	urb1	99	65.925	ENSGACG00000011703	urb1	99	63.078	Gasterosteus_aculeatus
ENSFHEG00000000202	urb1	99	44.389	ENSGAGG00000022544	URB1	99	43.104	Gopherus_agassizii
ENSFHEG00000000202	urb1	99	42.118	ENSGGOG00000000285	URB1	99	41.575	Gorilla_gorilla
ENSFHEG00000000202	urb1	99	68.541	ENSHBUG00000001904	urb1	100	65.154	Haplochromis_burtoni
ENSFHEG00000000202	urb1	99	42.209	ENSHGLG00000004907	URB1	99	41.501	Heterocephalus_glaber_female
ENSFHEG00000000202	urb1	99	42.543	ENSHGLG00100010749	URB1	99	41.827	Heterocephalus_glaber_male
ENSFHEG00000000202	urb1	66	69.545	ENSHCOG00000018683	urb1	99	63.514	Hippocampus_comes
ENSFHEG00000000202	urb1	99	46.961	ENSIPUG00000014721	urb1	98	46.961	Ictalurus_punctatus
ENSFHEG00000000202	urb1	99	42.296	ENSSTOG00000004539	URB1	99	41.455	Ictidomys_tridecemlineatus
ENSFHEG00000000202	urb1	99	66.650	ENSKMAG00000006001	urb1	98	73.217	Kryptolebias_marmoratus
ENSFHEG00000000202	urb1	97	59.945	ENSLBEG00000027208	urb1	99	59.808	Labrus_bergylta
ENSFHEG00000000202	urb1	96	58.261	ENSLACG00000017059	URB1	93	58.261	Latimeria_chalumnae
ENSFHEG00000000202	urb1	99	50.075	ENSLOCG00000009190	urb1	99	48.780	Lepisosteus_oculatus
ENSFHEG00000000202	urb1	99	42.306	ENSLAFG00000010407	URB1	99	41.783	Loxodonta_africana
ENSFHEG00000000202	urb1	99	42.026	ENSMFAG00000034391	URB1	96	41.689	Macaca_fascicularis
ENSFHEG00000000202	urb1	99	41.989	ENSMMUG00000010295	URB1	99	41.586	Macaca_mulatta
ENSFHEG00000000202	urb1	99	41.416	ENSMNEG00000032981	URB1	99	41.164	Macaca_nemestrina
ENSFHEG00000000202	urb1	99	42.312	ENSMLEG00000041435	URB1	99	41.955	Mandrillus_leucophaeus
ENSFHEG00000000202	urb1	99	63.899	ENSMAMG00000011238	urb1	99	62.378	Mastacembelus_armatus
ENSFHEG00000000202	urb1	99	67.491	ENSMZEG00005011862	urb1	100	65.059	Maylandia_zebra
ENSFHEG00000000202	urb1	95	56.250	ENSMGAG00000014512	URB1	94	56.250	Meleagris_gallopavo
ENSFHEG00000000202	urb1	91	53.351	ENSMAUG00000010516	Urb1	99	45.388	Mesocricetus_auratus
ENSFHEG00000000202	urb1	99	42.263	ENSMICG00000016424	URB1	99	41.554	Microcebus_murinus
ENSFHEG00000000202	urb1	99	41.750	ENSMOCG00000012613	Urb1	99	40.734	Microtus_ochrogaster
ENSFHEG00000000202	urb1	99	41.621	ENSMODG00000021076	URB1	99	41.025	Monodelphis_domestica
ENSFHEG00000000202	urb1	99	62.640	ENSMALG00000017411	urb1	99	61.173	Monopterus_albus
ENSFHEG00000000202	urb1	98	42.265	MGP_CAROLIEiJ_G0020948	Urb1	98	41.161	Mus_caroli
ENSFHEG00000000202	urb1	98	41.895	ENSMUSG00000039929	Urb1	98	40.935	Mus_musculus
ENSFHEG00000000202	urb1	98	42.209	MGP_PahariEiJ_G0016653	Urb1	98	41.408	Mus_pahari
ENSFHEG00000000202	urb1	98	42.116	MGP_SPRETEiJ_G0021854	Urb1	98	41.249	Mus_spretus
ENSFHEG00000000202	urb1	99	42.907	ENSMPUG00000001123	URB1	99	42.032	Mustela_putorius_furo
ENSFHEG00000000202	urb1	99	41.725	ENSNGAG00000001905	Urb1	99	40.809	Nannospalax_galili
ENSFHEG00000000202	urb1	81	63.350	ENSNBRG00000001049	urb1	99	63.280	Neolamprologus_brichardi
ENSFHEG00000000202	urb1	98	40.833	ENSNLEG00000026872	URB1	99	40.149	Nomascus_leucogenys
ENSFHEG00000000202	urb1	92	48.252	ENSMEUG00000010828	URB1	93	48.571	Notamacropus_eugenii
ENSFHEG00000000202	urb1	99	41.310	ENSOPRG00000013482	URB1	99	40.981	Ochotona_princeps
ENSFHEG00000000202	urb1	99	42.427	ENSODEG00000002587	URB1	99	41.327	Octodon_degus
ENSFHEG00000000202	urb1	99	68.943	ENSONIG00000005599	urb1	100	65.551	Oreochromis_niloticus
ENSFHEG00000000202	urb1	99	43.144	ENSOCUG00000009381	URB1	99	42.420	Oryctolagus_cuniculus
ENSFHEG00000000202	urb1	99	67.494	ENSORLG00000003429	urb1	99	64.283	Oryzias_latipes
ENSFHEG00000000202	urb1	99	67.259	ENSORLG00020013785	urb1	99	65.055	Oryzias_latipes_hni
ENSFHEG00000000202	urb1	99	64.014	ENSORLG00015019421	urb1	99	67.218	Oryzias_latipes_hsok
ENSFHEG00000000202	urb1	77	67.421	ENSOMEG00000002094	urb1	97	67.044	Oryzias_melastigma
ENSFHEG00000000202	urb1	99	41.955	ENSOGAG00000017140	URB1	99	41.402	Otolemur_garnettii
ENSFHEG00000000202	urb1	96	44.928	ENSOARG00000013679	URB1	99	43.497	Ovis_aries
ENSFHEG00000000202	urb1	99	41.910	ENSPPAG00000003423	URB1	99	41.349	Pan_paniscus
ENSFHEG00000000202	urb1	99	42.362	ENSPPRG00000023131	URB1	99	41.663	Panthera_pardus
ENSFHEG00000000202	urb1	88	43.208	ENSPTIG00000016125	URB1	89	43.916	Panthera_tigris_altaica
ENSFHEG00000000202	urb1	99	41.859	ENSPTRG00000013852	URB1	99	41.261	Pan_troglodytes
ENSFHEG00000000202	urb1	99	42.362	ENSPANG00000021964	URB1	99	41.911	Papio_anubis
ENSFHEG00000000202	urb1	99	50.277	ENSPKIG00000003683	urb1	98	50.785	Paramormyrops_kingsleyae
ENSFHEG00000000202	urb1	99	41.441	ENSPEMG00000021205	Urb1	98	40.810	Peromyscus_maniculatus_bairdii
ENSFHEG00000000202	urb1	78	44.718	ENSPMAG00000009733	URB1	94	44.366	Petromyzon_marinus
ENSFHEG00000000202	urb1	99	40.503	ENSPCIG00000016350	URB1	99	40.431	Phascolarctos_cinereus
ENSFHEG00000000202	urb1	99	79.442	ENSPLAG00000004371	urb1	99	75.530	Poecilia_latipinna
ENSFHEG00000000202	urb1	99	79.594	ENSPMEG00000006634	urb1	100	74.878	Poecilia_mexicana
ENSFHEG00000000202	urb1	99	79.391	ENSPREG00000013453	urb1	100	74.547	Poecilia_reticulata
ENSFHEG00000000202	urb1	98	42.407	ENSPPYG00000011359	URB1	99	41.405	Pongo_abelii
ENSFHEG00000000202	urb1	99	37.401	ENSPCAG00000007430	URB1	99	37.533	Procavia_capensis
ENSFHEG00000000202	urb1	99	42.055	ENSPCOG00000022695	URB1	99	41.779	Propithecus_coquereli
ENSFHEG00000000202	urb1	99	41.747	ENSPVAG00000000889	URB1	99	41.722	Pteropus_vampyrus
ENSFHEG00000000202	urb1	99	65.132	ENSPNYG00000010589	urb1	100	63.576	Pundamilia_nyererei
ENSFHEG00000000202	urb1	99	46.660	ENSPNAG00000019324	urb1	99	46.323	Pygocentrus_nattereri
ENSFHEG00000000202	urb1	99	41.828	ENSRNOG00000002080	Urb1	99	41.060	Rattus_norvegicus
ENSFHEG00000000202	urb1	99	42.092	ENSRBIG00000033122	URB1	99	41.656	Rhinopithecus_bieti
ENSFHEG00000000202	urb1	99	42.013	ENSRROG00000040237	URB1	99	41.586	Rhinopithecus_roxellana
ENSFHEG00000000202	urb1	99	41.759	ENSSBOG00000027672	URB1	99	41.261	Saimiri_boliviensis_boliviensis
ENSFHEG00000000202	urb1	99	41.504	ENSSHAG00000005140	URB1	99	40.744	Sarcophilus_harrisii
ENSFHEG00000000202	urb1	91	53.664	ENSSFOG00015000339	urb1	99	52.155	Scleropages_formosus
ENSFHEG00000000202	urb1	99	69.040	ENSSMAG00000003782	urb1	100	65.581	Scophthalmus_maximus
ENSFHEG00000000202	urb1	99	71.479	ENSSDUG00000012313	urb1	99	67.506	Seriola_dumerili
ENSFHEG00000000202	urb1	99	70.973	ENSSLDG00000023179	urb1	99	67.152	Seriola_lalandi_dorsalis
ENSFHEG00000000202	urb1	99	43.216	ENSSPUG00000012447	URB1	99	42.346	Sphenodon_punctatus
ENSFHEG00000000202	urb1	99	69.651	ENSSPAG00000006325	urb1	99	66.977	Stegastes_partitus
ENSFHEG00000000202	urb1	99	42.055	ENSSSCG00000032024	URB1	99	41.659	Sus_scrofa
ENSFHEG00000000202	urb1	74	46.467	ENSTGUG00000013442	URB1	100	46.122	Taeniopygia_guttata
ENSFHEG00000000202	urb1	99	62.875	ENSTRUG00000009372	urb1	99	59.601	Takifugu_rubripes
ENSFHEG00000000202	urb1	99	61.094	ENSTNIG00000016277	urb1	99	57.829	Tetraodon_nigroviridis
ENSFHEG00000000202	urb1	61	75.000	ENSTBEG00000010044	URB1	54	75.000	Tupaia_belangeri
ENSFHEG00000000202	urb1	84	56.863	ENSTTRG00000007712	URB1	85	56.863	Tursiops_truncatus
ENSFHEG00000000202	urb1	99	42.622	ENSUAMG00000012231	URB1	99	41.812	Ursus_americanus
ENSFHEG00000000202	urb1	81	55.342	ENSUMAG00000017419	URB1	93	43.690	Ursus_maritimus
ENSFHEG00000000202	urb1	67	69.048	ENSVPAG00000001164	URB1	59	69.048	Vicugna_pacos
ENSFHEG00000000202	urb1	95	49.772	ENSVVUG00000000551	URB1	99	41.623	Vulpes_vulpes
ENSFHEG00000000202	urb1	98	43.814	ENSXETG00000009895	urb1	99	41.997	Xenopus_tropicalis
ENSFHEG00000000202	urb1	99	73.770	ENSXCOG00000005500	urb1	99	73.993	Xiphophorus_couchianus
ENSFHEG00000000202	urb1	99	74.213	ENSXMAG00000007253	urb1	99	74.188	Xiphophorus_maculatus