EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000001267 (Gene tree)
Gene ID: 105940312
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 11509 bases
Position: chrKN811607.1:535565-547073
Accession: 105940312
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000000557	RRM_1	PF00076.22	1.8e-30	1	2
ENSFHEP00000000557	RRM_1	PF00076.22	1.8e-30	2	2
ENSFHEP00000021493	RRM_1	PF00076.22	1.2e-27	1	2
ENSFHEP00000021493	RRM_1	PF00076.22	1.2e-27	2	2
ENSFHEP00000021490	RRM_1	PF00076.22	9.7e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000015330	-	1861	-	ENSFHEP00000021493	327 (aa)	-	-
ENSFHET00000015332	-	3652	XM_012882811	ENSFHEP00000000557	344 (aa)	XP_012738265	A0A146ZIB1
ENSFHET00000015336	-	1098	-	ENSFHEP00000021490	305 (aa)	-	-

Gene Model

Click here to download ENSFHEG00000001267's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000001267's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000001267	trnau1apb	54	30.178	ENSFHEG00000018979	pabpc1a	54	30.178
ENSFHEG00000001267	trnau1apb	52	31.319	ENSFHEG00000006161	tia1	70	31.319
ENSFHEG00000001267	trnau1apb	75	43.874	ENSFHEG00000018232	trnau1apa	77	48.498
ENSFHEG00000001267	trnau1apb	54	31.361	ENSFHEG00000007548	pabpc4	62	30.726

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000001267	trnau1apb	100	72.477	ENSAPOG00000010086	trnau1apb	100	76.676	Acanthochromis_polyacanthus
ENSFHEG00000001267	trnau1apb	100	78.723	ENSACIG00000001863	trnau1apb	100	79.420	Amphilophus_citrinellus
ENSFHEG00000001267	trnau1apb	100	84.545	ENSAOCG00000011891	trnau1apb	100	84.971	Amphiprion_ocellaris
ENSFHEG00000001267	trnau1apb	99	75.652	ENSAPEG00000008029	trnau1apb	100	83.526	Amphiprion_percula
ENSFHEG00000001267	trnau1apb	100	84.242	ENSATEG00000002196	trnau1apb	100	84.682	Anabas_testudineus
ENSFHEG00000001267	trnau1apb	100	77.778	ENSACLG00000003016	trnau1apb	100	78.000	Astatotilapia_calliptera
ENSFHEG00000001267	trnau1apb	99	61.404	ENSAMXG00000001805	trnau1apb	99	61.988	Astyanax_mexicanus
ENSFHEG00000001267	trnau1apb	99	81.449	ENSCSEG00000018215	trnau1apb	98	82.596	Cynoglossus_semilaevis
ENSFHEG00000001267	trnau1apb	100	89.908	ENSCVAG00000017866	trnau1apb	100	89.908	Cyprinodon_variegatus
ENSFHEG00000001267	trnau1apb	99	57.391	ENSDARG00000056475	trnau1apb	99	60.870	Danio_rerio
ENSFHEG00000001267	trnau1apb	99	60.405	ENSELUG00000016683	trnau1apb	99	61.272	Esox_lucius
ENSFHEG00000001267	trnau1apb	99	67.131	ENSGMOG00000001160	trnau1apb	100	70.809	Gadus_morhua
ENSFHEG00000001267	trnau1apb	99	68.786	ENSGAFG00000006770	trnau1apb	100	76.081	Gambusia_affinis
ENSFHEG00000001267	trnau1apb	100	75.455	ENSGACG00000014944	trnau1apb	100	78.386	Gasterosteus_aculeatus
ENSFHEG00000001267	trnau1apb	75	38.057	ENSGAGG00000022384	-	78	37.751	Gopherus_agassizii
ENSFHEG00000001267	trnau1apb	100	84.726	ENSHBUG00000018944	trnau1apb	100	84.438	Haplochromis_burtoni
ENSFHEG00000001267	trnau1apb	67	82.609	ENSHCOG00000011350	trnau1apb	84	77.186	Hippocampus_comes
ENSFHEG00000001267	trnau1apb	99	59.302	ENSIPUG00000008843	tsp1l	99	62.500	Ictalurus_punctatus
ENSFHEG00000001267	trnau1apb	63	91.818	ENSKMAG00000010082	trnau1apb	100	86.416	Kryptolebias_marmoratus
ENSFHEG00000001267	trnau1apb	100	79.635	ENSLBEG00000020480	trnau1apb	100	79.420	Labrus_bergylta
ENSFHEG00000001267	trnau1apb	99	50.000	ENSLOCG00000013175	trnau1apb	99	50.578	Lepisosteus_oculatus
ENSFHEG00000001267	trnau1apb	100	82.424	ENSMAMG00000012192	trnau1apb	100	82.997	Mastacembelus_armatus
ENSFHEG00000001267	trnau1apb	100	84.726	ENSMZEG00005014852	trnau1apb	100	84.438	Maylandia_zebra
ENSFHEG00000001267	trnau1apb	75	38.153	ENSMGAG00000003234	-	99	37.652	Meleagris_gallopavo
ENSFHEG00000001267	trnau1apb	97	73.639	ENSMMOG00000021521	trnau1apb	100	73.639	Mola_mola
ENSFHEG00000001267	trnau1apb	99	71.720	ENSMALG00000003772	trnau1apb	100	71.720	Monopterus_albus
ENSFHEG00000001267	trnau1apb	97	79.056	ENSNBRG00000000751	trnau1apb	99	78.529	Neolamprologus_brichardi
ENSFHEG00000001267	trnau1apb	100	73.252	ENSONIG00000016639	trnau1apb	100	73.684	Oreochromis_niloticus
ENSFHEG00000001267	trnau1apb	65	87.111	ENSORLG00000013265	trnau1apb	100	80.342	Oryzias_latipes
ENSFHEG00000001267	trnau1apb	100	81.322	ENSORLG00020004464	trnau1apb	100	80.403	Oryzias_latipes_hni
ENSFHEG00000001267	trnau1apb	100	81.322	ENSORLG00015021098	trnau1apb	100	80.403	Oryzias_latipes_hsok
ENSFHEG00000001267	trnau1apb	65	87.556	ENSOMEG00000016531	trnau1apb	100	84.770	Oryzias_melastigma
ENSFHEG00000001267	trnau1apb	99	55.747	ENSPKIG00000007995	trnau1apb	99	58.028	Paramormyrops_kingsleyae
ENSFHEG00000001267	trnau1apb	75	39.676	ENSPSIG00000004189	-	78	38.956	Pelodiscus_sinensis
ENSFHEG00000001267	trnau1apb	77	76.744	ENSPMGG00000018509	trnau1apb	96	77.731	Periophthalmus_magnuspinnatus
ENSFHEG00000001267	trnau1apb	100	91.570	ENSPFOG00000003938	trnau1apb	100	91.570	Poecilia_formosa
ENSFHEG00000001267	trnau1apb	100	91.570	ENSPLAG00000015480	trnau1apb	100	91.570	Poecilia_latipinna
ENSFHEG00000001267	trnau1apb	100	91.570	ENSPMEG00000012743	trnau1apb	100	91.570	Poecilia_mexicana
ENSFHEG00000001267	trnau1apb	100	90.698	ENSPREG00000015035	trnau1apb	100	90.698	Poecilia_reticulata
ENSFHEG00000001267	trnau1apb	100	77.778	ENSPNYG00000012127	trnau1apb	100	75.714	Pundamilia_nyererei
ENSFHEG00000001267	trnau1apb	99	62.319	ENSPNAG00000019138	trnau1apb	98	62.609	Pygocentrus_nattereri
ENSFHEG00000001267	trnau1apb	99	58.239	ENSSFOG00015014158	trnau1apb	99	59.944	Scleropages_formosus
ENSFHEG00000001267	trnau1apb	99	79.942	ENSSMAG00000001745	trnau1apb	99	79.651	Scophthalmus_maximus
ENSFHEG00000001267	trnau1apb	99	84.638	ENSSDUG00000011109	trnau1apb	99	84.638	Seriola_dumerili
ENSFHEG00000001267	trnau1apb	99	84.058	ENSSLDG00000012947	trnau1apb	99	84.058	Seriola_lalandi_dorsalis
ENSFHEG00000001267	trnau1apb	75	35.294	ENSSPUG00000016701	-	82	55.814	Sphenodon_punctatus
ENSFHEG00000001267	trnau1apb	100	85.758	ENSSPAG00000006917	trnau1apb	100	85.057	Stegastes_partitus
ENSFHEG00000001267	trnau1apb	100	74.148	ENSTRUG00000008608	trnau1apb	100	76.657	Takifugu_rubripes
ENSFHEG00000001267	trnau1apb	99	65.689	ENSTNIG00000000916	trnau1apb	100	66.569	Tetraodon_nigroviridis
ENSFHEG00000001267	trnau1apb	99	79.630	ENSXCOG00000007974	trnau1apb	94	79.630	Xiphophorus_couchianus
ENSFHEG00000001267	trnau1apb	100	92.442	ENSXMAG00000029918	trnau1apb	100	92.442	Xiphophorus_maculatus