EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000002580 (Gene tree)
Gene ID: 105934566
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Minus strand
Length: 4589 bases
Position: chrKN811434.1:627005-631593
Accession: 105934566
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000022306	RRM_1	PF00076.22	7.9e-26	1	1
ENSFHEP00000001828	RRM_1	PF00076.22	7.9e-26	1	1
ENSFHEP00000001826	RRM_1	PF00076.22	8.1e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000013214	-	1318	-	ENSFHEP00000001828	166 (aa)	-	-
ENSFHET00000013218	-	1396	XM_012874625	ENSFHEP00000022306	166 (aa)	XP_012730079	UPI000644B53E
ENSFHET00000013224	-	1321	XM_012874622	ENSFHEP00000001826	168 (aa)	XP_012730076	-

Gene Model

Click here to download ENSFHEG00000002580's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000002580's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000002580	cirbpa	83	38.889	ENSFHEG00000014715	-	80	38.889
ENSFHEG00000002580	cirbpa	54	34.783	ENSFHEG00000005368	srsf3b	55	36.486
ENSFHEG00000002580	cirbpa	54	34.783	ENSFHEG00000014610	-	55	35.135
ENSFHEG00000002580	cirbpa	54	37.079	ENSFHEG00000007472	srsf4	73	34.211

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000002580	cirbpa	69	81.203	ENSAPOG00000004458	cirbpa	69	80.620	Acanthochromis_polyacanthus
ENSFHEG00000002580	cirbpa	100	84.181	ENSACIG00000016116	cirbpa	99	79.330	Amphilophus_citrinellus
ENSFHEG00000002580	cirbpa	100	71.978	ENSAOCG00000016212	cirbpa	99	72.826	Amphiprion_ocellaris
ENSFHEG00000002580	cirbpa	100	72.131	ENSAPEG00000011989	cirbpa	100	71.053	Amphiprion_percula
ENSFHEG00000002580	cirbpa	100	80.874	ENSATEG00000014985	cirbpa	99	75.824	Anabas_testudineus
ENSFHEG00000002580	cirbpa	100	84.358	ENSACLG00000002094	-	99	79.888	Astatotilapia_calliptera
ENSFHEG00000002580	cirbpa	100	53.140	ENSAMXG00000015612	cirbpb	81	59.016	Astyanax_mexicanus
ENSFHEG00000002580	cirbpa	50	72.289	ENSAMXG00000002894	cirbpa	81	64.062	Astyanax_mexicanus
ENSFHEG00000002580	cirbpa	100	62.371	ENSCSEG00000014344	cirbpa	99	64.433	Cynoglossus_semilaevis
ENSFHEG00000002580	cirbpa	100	82.703	ENSCVAG00000004853	cirbpa	100	82.514	Cyprinodon_variegatus
ENSFHEG00000002580	cirbpa	50	71.084	ENSDARG00000103672	cirbpa	99	54.211	Danio_rerio
ENSFHEG00000002580	cirbpa	100	52.885	ENSDARG00000013351	cirbpb	92	59.901	Danio_rerio
ENSFHEG00000002580	cirbpa	50	73.494	ENSELUG00000019588	cirbpb	100	57.426	Esox_lucius
ENSFHEG00000002580	cirbpa	50	73.494	ENSELUG00000004675	-	83	57.862	Esox_lucius
ENSFHEG00000002580	cirbpa	100	62.500	ENSGMOG00000012137	cirbpa	99	62.500	Gadus_morhua
ENSFHEG00000002580	cirbpa	100	55.440	ENSGMOG00000007179	cirbpb	98	48.731	Gadus_morhua
ENSFHEG00000002580	cirbpa	100	82.258	ENSGAFG00000008654	cirbpa	99	77.957	Gambusia_affinis
ENSFHEG00000002580	cirbpa	100	65.241	ENSGACG00000015206	cirbpa	99	68.783	Gasterosteus_aculeatus
ENSFHEG00000002580	cirbpa	100	63.253	ENSGACG00000014978	-	98	63.253	Gasterosteus_aculeatus
ENSFHEG00000002580	cirbpa	100	80.645	ENSHBUG00000022060	cirbpa	100	76.630	Haplochromis_burtoni
ENSFHEG00000002580	cirbpa	50	78.313	ENSIPUG00000000698	cirbpb	100	58.209	Ictalurus_punctatus
ENSFHEG00000002580	cirbpa	100	80.000	ENSKMAG00000005905	cirbpa	100	78.286	Kryptolebias_marmoratus
ENSFHEG00000002580	cirbpa	100	67.760	ENSLBEG00000000292	cirbpa	100	62.222	Labrus_bergylta
ENSFHEG00000002580	cirbpa	51	83.529	ENSLBEG00000027731	-	66	85.185	Labrus_bergylta
ENSFHEG00000002580	cirbpa	100	76.757	ENSMAMG00000010168	cirbpa	99	75.676	Mastacembelus_armatus
ENSFHEG00000002580	cirbpa	100	80.645	ENSMZEG00005025577	-	100	76.630	Maylandia_zebra
ENSFHEG00000002580	cirbpa	100	77.297	ENSMALG00000020092	cirbpa	99	76.374	Monopterus_albus
ENSFHEG00000002580	cirbpa	100	80.645	ENSNBRG00000019658	cirbpa	100	76.630	Neolamprologus_brichardi
ENSFHEG00000002580	cirbpa	100	84.181	ENSONIG00000010169	cirbpa	99	78.771	Oreochromis_niloticus
ENSFHEG00000002580	cirbpa	100	88.000	ENSORLG00000015433	cirbpa	98	83.140	Oryzias_latipes
ENSFHEG00000002580	cirbpa	100	88.000	ENSORLG00020016909	cirbpa	98	83.140	Oryzias_latipes_hni
ENSFHEG00000002580	cirbpa	100	88.000	ENSORLG00015016636	cirbpa	98	83.140	Oryzias_latipes_hsok
ENSFHEG00000002580	cirbpa	100	87.283	ENSOMEG00000021469	cirbpa	72	80.347	Oryzias_melastigma
ENSFHEG00000002580	cirbpa	99	75.138	ENSPMGG00000017342	cirbpa	95	73.913	Periophthalmus_magnuspinnatus
ENSFHEG00000002580	cirbpa	100	83.696	ENSPFOG00000015653	cirbpa	100	81.522	Poecilia_formosa
ENSFHEG00000002580	cirbpa	100	83.871	ENSPLAG00000011125	cirbpa	100	81.720	Poecilia_latipinna
ENSFHEG00000002580	cirbpa	100	83.871	ENSPMEG00000013878	cirbpa	100	81.522	Poecilia_mexicana
ENSFHEG00000002580	cirbpa	100	80.978	ENSPREG00000018042	cirbpa	98	78.495	Poecilia_reticulata
ENSFHEG00000002580	cirbpa	100	80.645	ENSPNYG00000007198	-	99	76.882	Pundamilia_nyererei
ENSFHEG00000002580	cirbpa	100	54.146	ENSPNAG00000019997	cirbpb	99	56.000	Pygocentrus_nattereri
ENSFHEG00000002580	cirbpa	100	55.376	ENSSFOG00015005346	cirbpb	99	64.362	Scleropages_formosus
ENSFHEG00000002580	cirbpa	100	68.020	ENSSMAG00000002412	cirbpa	100	64.615	Scophthalmus_maximus
ENSFHEG00000002580	cirbpa	100	74.699	ENSSDUG00000016099	cirbpa	99	70.833	Seriola_dumerili
ENSFHEG00000002580	cirbpa	100	71.751	ENSSPAG00000023037	cirbpa	98	69.492	Stegastes_partitus
ENSFHEG00000002580	cirbpa	100	74.713	ENSTRUG00000010187	cirbpa	99	70.115	Takifugu_rubripes
ENSFHEG00000002580	cirbpa	100	75.410	ENSTNIG00000000450	cirbpa	99	72.678	Tetraodon_nigroviridis
ENSFHEG00000002580	cirbpa	100	80.978	ENSXCOG00000008262	cirbpa	92	97.260	Xiphophorus_couchianus
ENSFHEG00000002580	cirbpa	100	81.183	ENSXMAG00000019336	cirbpa	99	79.570	Xiphophorus_maculatus