EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000003901 (Gene tree)
Gene ID: 105933566
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Minus strand
Length: 38587 bases
Position: chrKN811409.1:214003-252589
Accession: 105933566
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000003056	RRM_1	PF00076.22	0.00014	1	1
ENSFHEP00000023110	RRM_1	PF00076.22	0.00014	1	1
ENSFHEP00000003071	RRM_1	PF00076.22	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000011199	-	5566	-	ENSFHEP00000003056	1623 (aa)	-	-
ENSFHET00000011169	-	5243	XM_012873160	ENSFHEP00000003071	1734 (aa)	XP_012728614	UPI00064501EA
ENSFHET00000011185	-	5284	-	ENSFHEP00000023110	1623 (aa)	-	-

Gene Model

Click here to download ENSFHEG00000003901's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000003901's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000003901	tnrc6c2	98	52.598	ENSFHEG00000002936	tnrc6c1	99	52.821

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000003901	tnrc6c2	100	83.384	ENSAOCG00000017648	tnrc6c2	91	83.218	Amphiprion_ocellaris
ENSFHEG00000003901	tnrc6c2	96	85.683	ENSATEG00000003656	tnrc6c2	57	83.370	Anabas_testudineus
ENSFHEG00000003901	tnrc6c2	100	83.161	ENSACLG00000006469	tnrc6c2	93	81.462	Astatotilapia_calliptera
ENSFHEG00000003901	tnrc6c2	100	58.388	ENSAMXG00000009579	tnrc6c2	100	56.997	Astyanax_mexicanus
ENSFHEG00000003901	tnrc6c2	100	58.094	ENSDARG00000103851	tnrc6c2	100	56.825	Danio_rerio
ENSFHEG00000003901	tnrc6c2	91	80.556	ENSELUG00000008149	-	92	80.864	Esox_lucius
ENSFHEG00000003901	tnrc6c2	100	60.449	ENSELUG00000007206	tnrc6c2	100	60.563	Esox_lucius
ENSFHEG00000003901	tnrc6c2	100	72.041	ENSGACG00000019401	tnrc6c2	94	72.136	Gasterosteus_aculeatus
ENSFHEG00000003901	tnrc6c2	100	83.161	ENSHBUG00000018310	tnrc6c2	93	81.462	Haplochromis_burtoni
ENSFHEG00000003901	tnrc6c2	100	75.858	ENSHCOG00000017802	tnrc6c2	92	74.269	Hippocampus_comes
ENSFHEG00000003901	tnrc6c2	100	54.310	ENSIPUG00000022767	tnrc6c2	100	52.980	Ictalurus_punctatus
ENSFHEG00000003901	tnrc6c2	100	82.039	ENSMAMG00000001718	tnrc6c2	100	82.199	Mastacembelus_armatus
ENSFHEG00000003901	tnrc6c2	100	83.222	ENSMZEG00005023905	tnrc6c2	93	81.520	Maylandia_zebra
ENSFHEG00000003901	tnrc6c2	100	80.676	ENSMALG00000020932	tnrc6c2	100	81.824	Monopterus_albus
ENSFHEG00000003901	tnrc6c2	96	87.047	ENSNBRG00000000452	tnrc6c2	57	85.951	Neolamprologus_brichardi
ENSFHEG00000003901	tnrc6c2	98	80.842	ENSONIG00000018123	tnrc6c2	100	81.470	Oreochromis_niloticus
ENSFHEG00000003901	tnrc6c2	100	82.569	ENSORLG00000003327	tnrc6c2	92	80.219	Oryzias_latipes
ENSFHEG00000003901	tnrc6c2	100	82.263	ENSORLG00020010730	tnrc6c2	92	80.161	Oryzias_latipes_hni
ENSFHEG00000003901	tnrc6c2	100	82.303	ENSORLG00015009232	tnrc6c2	92	80.485	Oryzias_latipes_hsok
ENSFHEG00000003901	tnrc6c2	100	82.813	ENSOMEG00000017952	tnrc6c2	92	80.681	Oryzias_melastigma
ENSFHEG00000003901	tnrc6c2	95	83.513	ENSPFOG00000011590	tnrc6c2	96	81.967	Poecilia_formosa
ENSFHEG00000003901	tnrc6c2	100	84.435	ENSPLAG00000006992	tnrc6c2	100	84.014	Poecilia_latipinna
ENSFHEG00000003901	tnrc6c2	100	91.958	ENSPMEG00000012946	tnrc6c2	99	90.856	Poecilia_mexicana
ENSFHEG00000003901	tnrc6c2	100	84.498	ENSPREG00000015823	tnrc6c2	100	84.255	Poecilia_reticulata
ENSFHEG00000003901	tnrc6c2	100	82.635	ENSPNYG00000002582	tnrc6c2	100	82.089	Pundamilia_nyererei
ENSFHEG00000003901	tnrc6c2	100	56.433	ENSPNAG00000026838	tnrc6c2	100	57.374	Pygocentrus_nattereri
ENSFHEG00000003901	tnrc6c2	100	79.686	ENSSMAG00000015145	tnrc6c2	100	80.109	Scophthalmus_maximus
ENSFHEG00000003901	tnrc6c2	100	83.718	ENSSDUG00000020741	tnrc6c2	100	82.746	Seriola_dumerili
ENSFHEG00000003901	tnrc6c2	100	83.597	ENSSLDG00000002077	tnrc6c2	100	82.625	Seriola_lalandi_dorsalis
ENSFHEG00000003901	tnrc6c2	100	84.000	ENSSPAG00000013052	tnrc6c2	91	83.631	Stegastes_partitus
ENSFHEG00000003901	tnrc6c2	92	81.987	ENSTNIG00000004178	tnrc6c2	94	81.332	Tetraodon_nigroviridis
ENSFHEG00000003901	tnrc6c2	100	85.526	ENSXCOG00000013252	tnrc6c2	100	85.345	Xiphophorus_couchianus
ENSFHEG00000003901	tnrc6c2	100	91.713	ENSXMAG00000006739	tnrc6c2	100	92.081	Xiphophorus_maculatus