EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000003955 (Gene tree)
Gene ID: 105932930
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Minus strand
Length: 9037 bases
Position: chrKN811398.1:909755-918791
Accession: 105932930
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000023130	RRM_1	PF00076.22	1e-31	1	2
ENSFHEP00000023130	RRM_1	PF00076.22	1e-31	2	2
ENSFHEP00000003119	RRM_1	PF00076.22	2.9e-31	1	2
ENSFHEP00000003119	RRM_1	PF00076.22	2.9e-31	2	2
ENSFHEP00000023230	RRM_1	PF00076.22	5.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000011108	-	1187	-	ENSFHEP00000023230	149 (aa)	-	-
ENSFHET00000011099	-	768	-	ENSFHEP00000023130	255 (aa)	-	-
ENSFHET00000011085	-	4036	XM_012872265	ENSFHEP00000003119	349 (aa)	XP_012727719	A0A146ZXL3

Gene Model

Click here to download ENSFHEG00000003955's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000003955's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000003955	srsf5a	98	39.474	ENSFHEG00000017425	-	91	40.609
ENSFHEG00000003955	srsf5a	96	60.140	ENSFHEG00000007472	srsf4	98	61.538
ENSFHEG00000003955	srsf5a	54	39.286	ENSFHEG00000014610	-	56	40.000
ENSFHEG00000003955	srsf5a	56	39.773	ENSFHEG00000005368	srsf3b	56	41.429
ENSFHEG00000003955	srsf5a	99	36.306	ENSFHEG00000020851	srsf9	75	37.912
ENSFHEG00000003955	srsf5a	95	61.268	ENSFHEG00000009476	srsf5b	60	65.829
ENSFHEG00000003955	srsf5a	95	57.343	ENSFHEG00000023065	srsf6a	73	50.376
ENSFHEG00000003955	srsf5a	98	32.895	ENSFHEG00000003174	srsf1a	70	40.854

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000003955	srsf5a	97	69.655	ENSAPOG00000017395	srsf5a	80	76.357	Acanthochromis_polyacanthus
ENSFHEG00000003955	srsf5a	97	75.862	ENSACIG00000011892	srsf5a	97	73.826	Amphilophus_citrinellus
ENSFHEG00000003955	srsf5a	97	69.655	ENSAOCG00000014967	srsf5a	82	77.132	Amphiprion_ocellaris
ENSFHEG00000003955	srsf5a	97	69.655	ENSAPEG00000009297	srsf5a	82	77.132	Amphiprion_percula
ENSFHEG00000003955	srsf5a	97	74.483	ENSATEG00000000198	srsf5a	83	79.845	Anabas_testudineus
ENSFHEG00000003955	srsf5a	97	61.905	ENSAPLG00000002469	-	70	70.225	Anas_platyrhynchos
ENSFHEG00000003955	srsf5a	97	66.207	ENSACAG00000029015	-	68	71.910	Anolis_carolinensis
ENSFHEG00000003955	srsf5a	97	78.621	ENSACLG00000027166	srsf5a	82	82.171	Astatotilapia_calliptera
ENSFHEG00000003955	srsf5a	97	69.655	ENSAMXG00000030476	srsf5a	57	88.235	Astyanax_mexicanus
ENSFHEG00000003955	srsf5a	97	63.014	ENSCPBG00000021518	-	70	72.067	Chrysemys_picta_bellii
ENSFHEG00000003955	srsf5a	99	57.823	ENSCSAVG00000011376	-	78	56.931	Ciona_savignyi
ENSFHEG00000003955	srsf5a	97	81.379	ENSCSEG00000008109	srsf5a	78	82.946	Cynoglossus_semilaevis
ENSFHEG00000003955	srsf5a	98	91.781	ENSCVAG00000016982	srsf5a	99	91.781	Cyprinodon_variegatus
ENSFHEG00000003955	srsf5a	97	73.103	ENSDARG00000029818	srsf5a	99	67.785	Danio_rerio
ENSFHEG00000003955	srsf5a	97	67.550	ENSELUG00000020439	srsf5a	62	76.000	Esox_lucius
ENSFHEG00000003955	srsf5a	97	62.759	ENSFALG00000005098	-	64	71.023	Ficedula_albicollis
ENSFHEG00000003955	srsf5a	97	70.345	ENSGMOG00000000869	srsf5a	94	78.531	Gadus_morhua
ENSFHEG00000003955	srsf5a	97	62.069	ENSGALG00000033259	SRSF5A	63	71.429	Gallus_gallus
ENSFHEG00000003955	srsf5a	93	78.899	ENSGAFG00000018237	srsf5a	75	79.231	Gambusia_affinis
ENSFHEG00000003955	srsf5a	97	69.655	ENSGACG00000011761	srsf5a	70	79.775	Gasterosteus_aculeatus
ENSFHEG00000003955	srsf5a	97	63.014	ENSGAGG00000007312	-	70	72.067	Gopherus_agassizii
ENSFHEG00000003955	srsf5a	97	80.000	ENSHBUG00000014048	srsf5a	82	81.783	Haplochromis_burtoni
ENSFHEG00000003955	srsf5a	97	73.793	ENSHCOG00000017557	srsf5a	61	78.000	Hippocampus_comes
ENSFHEG00000003955	srsf5a	97	75.862	ENSIPUG00000003439	srsf5a	68	77.000	Ictalurus_punctatus
ENSFHEG00000003955	srsf5a	97	74.483	ENSKMAG00000014937	srsf5a	73	76.062	Kryptolebias_marmoratus
ENSFHEG00000003955	srsf5a	97	75.168	ENSLBEG00000017153	srsf5a	73	81.500	Labrus_bergylta
ENSFHEG00000003955	srsf5a	97	68.276	ENSLACG00000017874	-	72	72.000	Latimeria_chalumnae
ENSFHEG00000003955	srsf5a	97	68.276	ENSLOCG00000014075	srsf5a	71	68.692	Lepisosteus_oculatus
ENSFHEG00000003955	srsf5a	97	68.276	ENSMAMG00000000192	srsf5a	83	75.581	Mastacembelus_armatus
ENSFHEG00000003955	srsf5a	97	80.000	ENSMZEG00005010485	srsf5a	82	81.783	Maylandia_zebra
ENSFHEG00000003955	srsf5a	98	61.644	ENSMGAG00000011888	-	96	71.338	Meleagris_gallopavo
ENSFHEG00000003955	srsf5a	97	70.345	ENSMMOG00000009793	srsf5a	79	75.194	Mola_mola
ENSFHEG00000003955	srsf5a	97	66.207	ENSMALG00000021194	srsf5a	81	71.705	Monopterus_albus
ENSFHEG00000003955	srsf5a	97	79.310	ENSNBRG00000000771	srsf5a	82	81.395	Neolamprologus_brichardi
ENSFHEG00000003955	srsf5a	97	79.310	ENSONIG00000019583	srsf5a	82	81.395	Oreochromis_niloticus
ENSFHEG00000003955	srsf5a	97	77.241	ENSORLG00000009268	srsf5a	85	80.233	Oryzias_latipes
ENSFHEG00000003955	srsf5a	97	77.241	ENSORLG00020003281	srsf5	85	80.233	Oryzias_latipes_hni
ENSFHEG00000003955	srsf5a	97	77.241	ENSORLG00015023075	srsf5	85	80.233	Oryzias_latipes_hsok
ENSFHEG00000003955	srsf5a	97	75.172	ENSOMEG00000000628	srsf5a	85	79.845	Oryzias_melastigma
ENSFHEG00000003955	srsf5a	97	68.966	ENSPKIG00000002054	srsf5a	68	74.000	Paramormyrops_kingsleyae
ENSFHEG00000003955	srsf5a	97	65.068	ENSPSIG00000008238	-	69	71.751	Pelodiscus_sinensis
ENSFHEG00000003955	srsf5a	95	66.901	ENSPMGG00000020125	srsf5a	73	58.015	Periophthalmus_magnuspinnatus
ENSFHEG00000003955	srsf5a	97	90.345	ENSPFOG00000022993	srsf5a	79	91.667	Poecilia_formosa
ENSFHEG00000003955	srsf5a	99	90.476	ENSPLAG00000005508	srsf5a	80	91.729	Poecilia_latipinna
ENSFHEG00000003955	srsf5a	97	90.345	ENSPMEG00000016339	srsf5a	79	92.045	Poecilia_mexicana
ENSFHEG00000003955	srsf5a	97	91.034	ENSPREG00000018091	srsf5a	99	84.986	Poecilia_reticulata
ENSFHEG00000003955	srsf5a	97	80.000	ENSPNYG00000021245	srsf5a	82	81.783	Pundamilia_nyererei
ENSFHEG00000003955	srsf5a	97	72.414	ENSPNAG00000021333	srsf5a	65	74.500	Pygocentrus_nattereri
ENSFHEG00000003955	srsf5a	97	70.345	ENSSFOG00015008377	srsf5	66	74.000	Scleropages_formosus
ENSFHEG00000003955	srsf5a	97	86.897	ENSSMAG00000010899	srsf5a	84	82.558	Scophthalmus_maximus
ENSFHEG00000003955	srsf5a	97	68.276	ENSSDUG00000006103	srsf5a	81	76.357	Seriola_dumerili
ENSFHEG00000003955	srsf5a	97	68.276	ENSSLDG00000004146	srsf5a	81	76.744	Seriola_lalandi_dorsalis
ENSFHEG00000003955	srsf5a	97	62.759	ENSSPUG00000002052	-	68	69.101	Sphenodon_punctatus
ENSFHEG00000003955	srsf5a	97	68.276	ENSSPAG00000002821	srsf5a	81	76.357	Stegastes_partitus
ENSFHEG00000003955	srsf5a	95	62.676	ENSTGUG00000011492	-	84	57.519	Taeniopygia_guttata
ENSFHEG00000003955	srsf5a	97	81.379	ENSTRUG00000022908	srsf5a	82	79.457	Takifugu_rubripes
ENSFHEG00000003955	srsf5a	97	68.966	ENSXETG00000017937	srsf5a	71	70.500	Xenopus_tropicalis
ENSFHEG00000003955	srsf5a	97	86.897	ENSXCOG00000015338	srsf5a	99	73.199	Xiphophorus_couchianus
ENSFHEG00000003955	srsf5a	97	91.724	ENSXMAG00000012823	srsf5a	99	85.185	Xiphophorus_maculatus