EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSFHEG00000004011 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Fundulus_heteroclitus
Status
putative
Strand
Minus strand
Length
9552 bases
Position
chrKN811600.1:91065-100616
Accession
ZDB-GENE-070822-23
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSFHEP00000003151LSMPF01423.229.5e-1311
ENSFHEP00000003156LSMPF01423.229.6e-1311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSFHET00000011015-267-ENSFHEP0000000315688 (aa)--
ENSFHET00000011030-270-ENSFHEP0000000315189 (aa)--
Gene Model
Click here to download ENSFHEG00000004011's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000004011's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSFHEG00000004011lsm59676.667ENSG00000106355LSM510082.258Homo_sapiens
ENSFHEG00000004011lsm59677.528ENSAPOG00000020779LSM59877.528Acanthochromis_polyacanthus
ENSFHEG00000004011lsm57285.075ENSAPOG00000011743LSM510085.484Acanthochromis_polyacanthus
ENSFHEG00000004011lsm59676.667ENSAMEG00000006700LSM59976.667Ailuropoda_melanoleuca
ENSFHEG00000004011lsm55579.167ENSACIG00000019185lsm58679.167Amphilophus_citrinellus
ENSFHEG00000004011lsm59677.528ENSAOCG00000001636lsm59877.528Amphiprion_ocellaris
ENSFHEG00000004011lsm56685.484ENSAPEG00000008201lsm510085.484Amphiprion_percula
ENSFHEG00000004011lsm59677.528ENSAPEG00000008151lsm59877.528Amphiprion_percula
ENSFHEG00000004011lsm58478.205ENSATEG00000020470lsm58179.167Anabas_testudineus
ENSFHEG00000004011lsm58085.135ENSAPLG00000008171LSM510085.135Anas_platyrhynchos
ENSFHEG00000004011lsm55670.588ENSACAG00000009530LSM58570.588Anolis_carolinensis
ENSFHEG00000004011lsm59479.310ENSANAG00000034409-9976.667Aotus_nancymaae
ENSFHEG00000004011lsm56976.923ENSANAG00000037758-8176.923Aotus_nancymaae
ENSFHEG00000004011lsm510073.118ENSANAG00000024192-9673.118Aotus_nancymaae
ENSFHEG00000004011lsm59779.775ENSACLG00000012891lsm510079.775Astatotilapia_calliptera
ENSFHEG00000004011lsm510065.263ENSAMXG00000035543lsm510066.316Astyanax_mexicanus
ENSFHEG00000004011lsm55265.957ENSBTAG00000052014-6265.957Bos_taurus
ENSFHEG00000004011lsm59680.000ENSBTAG00000002332LSM59980.000Bos_taurus
ENSFHEG00000004011lsm59659.551WBGene00003079lsm-510058.242Caenorhabditis_elegans
ENSFHEG00000004011lsm59876.087ENSCJAG00000047379LSM58470.370Callithrix_jacchus
ENSFHEG00000004011lsm58272.368ENSCJAG00000005678-8472.368Callithrix_jacchus
ENSFHEG00000004011lsm59675.556ENSCAFG00000019261-9975.556Canis_familiaris
ENSFHEG00000004011lsm59676.667ENSCAFG00020004946LSM59976.667Canis_lupus_dingo
ENSFHEG00000004011lsm57262.687ENSCHIG00000021428-8661.728Capra_hircus
ENSFHEG00000004011lsm59675.556ENSCHIG00000004079-9975.556Capra_hircus
ENSFHEG00000004011lsm59676.667ENSCHIG00000024539LSM59976.667Capra_hircus
ENSFHEG00000004011lsm59665.556ENSTSYG00000028728-9965.556Carlito_syrichta
ENSFHEG00000004011lsm59662.921ENSTSYG00000026530-9062.921Carlito_syrichta
ENSFHEG00000004011lsm59676.667ENSTSYG00000006449-9976.667Carlito_syrichta
ENSFHEG00000004011lsm59658.140ENSTSYG00000036637-9958.140Carlito_syrichta
ENSFHEG00000004011lsm58178.667ENSCAPG00000006980LSM510078.667Cavia_aperea
ENSFHEG00000004011lsm59676.667ENSCPOG00000036386LSM59976.667Cavia_porcellus
ENSFHEG00000004011lsm57363.235ENSCCAG00000037334-8863.235Cebus_capucinus
ENSFHEG00000004011lsm59675.556ENSCCAG00000000821-9975.556Cebus_capucinus
ENSFHEG00000004011lsm59180.952ENSCCAG00000032123-9180.952Cebus_capucinus
ENSFHEG00000004011lsm59676.667ENSCCAG00000037808-9976.667Cebus_capucinus
ENSFHEG00000004011lsm56980.000ENSCCAG00000032792-8180.000Cebus_capucinus
ENSFHEG00000004011lsm59676.667ENSCATG00000040218LSM510082.258Cercocebus_atys
ENSFHEG00000004011lsm59670.930ENSCATG00000014790-10070.930Cercocebus_atys
ENSFHEG00000004011lsm59676.667ENSCLAG00000000202LSM59976.667Chinchilla_lanigera
ENSFHEG00000004011lsm59767.778ENSCLAG00000005062-8967.778Chinchilla_lanigera
ENSFHEG00000004011lsm57872.973ENSCHOG00000005335LSM59772.973Choloepus_hoffmanni
ENSFHEG00000004011lsm59676.667ENSCPBG00000013685LSM59976.667Chrysemys_picta_bellii
ENSFHEG00000004011lsm59868.889ENSCING00000020625-10068.889Ciona_intestinalis
ENSFHEG00000004011lsm59871.111ENSCSAVG00000001439-10071.111Ciona_savignyi
ENSFHEG00000004011lsm59676.667ENSCANG00000039909LSM510082.258Colobus_angolensis_palliatus
ENSFHEG00000004011lsm59676.667ENSCGRG00001015461Lsm59976.667Cricetulus_griseus_chok1gshd
ENSFHEG00000004011lsm58185.333ENSCGRG00000007677Lsm510085.333Cricetulus_griseus_crigri
ENSFHEG00000004011lsm55579.167ENSCSEG00000015286lsm58179.167Cynoglossus_semilaevis
ENSFHEG00000004011lsm59481.609ENSCVAG00000004262lsm59581.609Cyprinodon_variegatus
ENSFHEG00000004011lsm510076.087ENSDARG00000071573lsm510083.871Danio_rerio
ENSFHEG00000004011lsm59166.279ENSDNOG00000049495-9466.279Dasypus_novemcinctus
ENSFHEG00000004011lsm59676.667ENSDNOG00000034958LSM59976.667Dasypus_novemcinctus
ENSFHEG00000004011lsm59676.667ENSDORG00000009422Lsm59976.667Dipodomys_ordii
ENSFHEG00000004011lsm58178.667FBgn0035675CG66108278.667Drosophila_melanogaster
ENSFHEG00000004011lsm57748.571ENSETEG00000000777-9745.349Echinops_telfairi
ENSFHEG00000004011lsm58082.857ENSETEG00000016074-9882.857Echinops_telfairi
ENSFHEG00000004011lsm59676.667ENSETEG00000018068LSM59976.667Echinops_telfairi
ENSFHEG00000004011lsm59672.941ENSETEG00000010651-9972.941Echinops_telfairi
ENSFHEG00000004011lsm59773.563ENSETEG00000001469-10073.563Echinops_telfairi
ENSFHEG00000004011lsm59772.222ENSEBUG00000008540lsm59972.222Eptatretus_burgeri
ENSFHEG00000004011lsm59676.667ENSEASG00005003500LSM59976.667Equus_asinus_asinus
ENSFHEG00000004011lsm59677.907ENSECAG00000018445LSM59977.907Equus_caballus
ENSFHEG00000004011lsm56077.193ENSEEUG00000004102LSM59577.193Erinaceus_europaeus
ENSFHEG00000004011lsm59480.460ENSELUG00000007792lsm59580.460Esox_lucius
ENSFHEG00000004011lsm59676.667ENSFCAG00000000230LSM59976.667Felis_catus
ENSFHEG00000004011lsm58285.526ENSFALG00000001892LSM59285.526Ficedula_albicollis
ENSFHEG00000004011lsm58269.444ENSFDAG00000008685-8969.444Fukomys_damarensis
ENSFHEG00000004011lsm59676.667ENSFDAG00000008767LSM59976.667Fukomys_damarensis
ENSFHEG00000004011lsm59381.395ENSGMOG00000018235lsm59481.395Gadus_morhua
ENSFHEG00000004011lsm59676.667ENSGALG00000041625LSM59976.667Gallus_gallus
ENSFHEG00000004011lsm56685.484ENSGAFG00000016824lsm510085.484Gambusia_affinis
ENSFHEG00000004011lsm59677.528ENSGACG00000005528lsm59877.528Gasterosteus_aculeatus
ENSFHEG00000004011lsm59676.667ENSGAGG00000015593LSM59976.667Gopherus_agassizii
ENSFHEG00000004011lsm59676.667ENSGGOG00000043469LSM59976.667Gorilla_gorilla
ENSFHEG00000004011lsm59779.775ENSHBUG00000013773lsm510079.775Haplochromis_burtoni
ENSFHEG00000004011lsm59676.667ENSHGLG00000011765LSM59976.667Heterocephalus_glaber_female
ENSFHEG00000004011lsm59479.310ENSHGLG00100015610LSM59879.310Heterocephalus_glaber_male
ENSFHEG00000004011lsm55577.083ENSHCOG00000008288lsm58177.083Hippocampus_comes
ENSFHEG00000004011lsm59482.558ENSIPUG00000021095LSM59482.558Ictalurus_punctatus
ENSFHEG00000004011lsm59169.412ENSSTOG00000033886-9669.412Ictidomys_tridecemlineatus
ENSFHEG00000004011lsm59676.667ENSSTOG00000012662LSM59976.667Ictidomys_tridecemlineatus
ENSFHEG00000004011lsm56670.000ENSJJAG00000016144-7570.000Jaculus_jaculus
ENSFHEG00000004011lsm56879.688ENSJJAG00000004475-8179.688Jaculus_jaculus
ENSFHEG00000004011lsm58285.526ENSJJAG00000012145-8485.526Jaculus_jaculus
ENSFHEG00000004011lsm59678.022ENSKMAG00000021861lsm59878.022Kryptolebias_marmoratus
ENSFHEG00000004011lsm57285.075ENSLBEG00000009235LSM55385.075Labrus_bergylta
ENSFHEG00000004011lsm56372.727ENSLBEG00000017379lsm58972.727Labrus_bergylta
ENSFHEG00000004011lsm59479.310ENSLACG00000022448LSM59976.667Latimeria_chalumnae
ENSFHEG00000004011lsm59480.460ENSLOCG00000012903lsm59976.667Lepisosteus_oculatus
ENSFHEG00000004011lsm59676.667ENSLAFG00000029579LSM59976.667Loxodonta_africana
ENSFHEG00000004011lsm59756.044ENSLAFG00000027938-10056.044Loxodonta_africana
ENSFHEG00000004011lsm55570.000ENSMFAG00000031187-8570.000Macaca_fascicularis
ENSFHEG00000004011lsm59676.667ENSMFAG00000038508LSM59976.667Macaca_fascicularis
ENSFHEG00000004011lsm58284.211ENSMFAG00000030152-8484.211Macaca_fascicularis
ENSFHEG00000004011lsm58284.211ENSMMUG00000030131-8484.211Macaca_mulatta
ENSFHEG00000004011lsm59672.093ENSMMUG00000039822-10072.093Macaca_mulatta
ENSFHEG00000004011lsm55871.698ENSMMUG00000045129-8371.698Macaca_mulatta
ENSFHEG00000004011lsm59676.667ENSMNEG00000015331LSM510082.258Macaca_nemestrina
ENSFHEG00000004011lsm58284.211ENSMNEG00000037935-8484.211Macaca_nemestrina
ENSFHEG00000004011lsm58279.167ENSMLEG00000034037-8479.167Mandrillus_leucophaeus
ENSFHEG00000004011lsm59676.667ENSMLEG00000024945LSM59976.667Mandrillus_leucophaeus
ENSFHEG00000004011lsm59774.444ENSMAMG00000012869lsm59974.444Mastacembelus_armatus
ENSFHEG00000004011lsm59779.775ENSMZEG00005019554lsm510079.775Maylandia_zebra
ENSFHEG00000004011lsm59676.667ENSMGAG00000012117LSM59976.667Meleagris_gallopavo
ENSFHEG00000004011lsm59676.667ENSMAUG00000012222Lsm59976.667Mesocricetus_auratus
ENSFHEG00000004011lsm59182.143ENSMAUG00000008132-9976.667Mesocricetus_auratus
ENSFHEG00000004011lsm59676.667ENSMICG00000005353LSM59976.667Microcebus_murinus
ENSFHEG00000004011lsm56381.356ENSMICG00000033928-7781.356Microcebus_murinus
ENSFHEG00000004011lsm59676.667ENSMOCG00000012018Lsm59976.667Microtus_ochrogaster
ENSFHEG00000004011lsm58288.158ENSMMOG00000004026lsm59382.716Mola_mola
ENSFHEG00000004011lsm56682.258ENSMODG00000013274-10082.258Monodelphis_domestica
ENSFHEG00000004011lsm56680.645ENSMALG00000010343lsm510080.645Monopterus_albus
ENSFHEG00000004011lsm59676.667MGP_CAROLIEiJ_G0028421Lsm59976.667Mus_caroli
ENSFHEG00000004011lsm59676.667ENSMUSG00000091625Lsm59976.667Mus_musculus
ENSFHEG00000004011lsm59676.667MGP_PahariEiJ_G0022171Lsm59976.667Mus_pahari
ENSFHEG00000004011lsm59676.667MGP_SPRETEiJ_G0029423Lsm59976.667Mus_spretus
ENSFHEG00000004011lsm59676.667ENSMLUG00000017028LSM59976.667Myotis_lucifugus
ENSFHEG00000004011lsm510060.674ENSNGAG00000022569-9960.674Nannospalax_galili
ENSFHEG00000004011lsm59676.667ENSNGAG00000024142Lsm59976.667Nannospalax_galili
ENSFHEG00000004011lsm58274.359ENSNGAG00000017707-8374.359Nannospalax_galili
ENSFHEG00000004011lsm55579.167ENSNBRG00000009964LSM510079.167Neolamprologus_brichardi
ENSFHEG00000004011lsm56082.456ENSNBRG00000011386lsm57682.456Neolamprologus_brichardi
ENSFHEG00000004011lsm59676.667ENSNLEG00000015268LSM59976.667Nomascus_leucogenys
ENSFHEG00000004011lsm58185.333ENSOPRG00000002443LSM510085.333Ochotona_princeps
ENSFHEG00000004011lsm59676.667ENSODEG00000019072-9976.667Octodon_degus
ENSFHEG00000004011lsm59676.667ENSODEG00000008258-9976.667Octodon_degus
ENSFHEG00000004011lsm57650.704ENSOANG00000014540-9550.704Ornithorhynchus_anatinus
ENSFHEG00000004011lsm59676.667ENSOCUG00000029043LSM59976.667Oryctolagus_cuniculus
ENSFHEG00000004011lsm59084.337ENSORLG00020003019lsm58484.337Oryzias_latipes_hni
ENSFHEG00000004011lsm59676.404ENSORLG00015003338lsm59876.404Oryzias_latipes_hsok
ENSFHEG00000004011lsm510075.000ENSOMEG00000001078lsm510075.000Oryzias_melastigma
ENSFHEG00000004011lsm59676.667ENSOGAG00000013892LSM59976.667Otolemur_garnettii
ENSFHEG00000004011lsm59676.667ENSOARG00000006944LSM59976.667Ovis_aries
ENSFHEG00000004011lsm59676.667ENSPPAG00000003697-9976.667Pan_paniscus
ENSFHEG00000004011lsm59676.667ENSPPRG00000002550LSM59976.667Panthera_pardus
ENSFHEG00000004011lsm59676.667ENSPTIG00000015604LSM59976.667Panthera_tigris_altaica
ENSFHEG00000004011lsm59677.907ENSPTRG00000049488-9977.907Pan_troglodytes
ENSFHEG00000004011lsm59677.907ENSPTRG00000019057LSM59977.907Pan_troglodytes
ENSFHEG00000004011lsm59672.093ENSPANG00000032538-10072.093Papio_anubis
ENSFHEG00000004011lsm59676.667ENSPANG00000032179-9976.667Papio_anubis
ENSFHEG00000004011lsm59180.952ENSPANG00000033477-9974.444Papio_anubis
ENSFHEG00000004011lsm510076.087ENSPKIG00000011910lsm510076.087Paramormyrops_kingsleyae
ENSFHEG00000004011lsm58085.135ENSPSIG00000014796LSM510085.135Pelodiscus_sinensis
ENSFHEG00000004011lsm56685.484ENSPMGG00000011699lsm510085.484Periophthalmus_magnuspinnatus
ENSFHEG00000004011lsm55869.811ENSPEMG00000019994-9069.811Peromyscus_maniculatus_bairdii
ENSFHEG00000004011lsm59167.500ENSPEMG00000022375-9067.500Peromyscus_maniculatus_bairdii
ENSFHEG00000004011lsm59481.609ENSPFOG00000001433lsm59581.609Poecilia_formosa
ENSFHEG00000004011lsm59485.057ENSPLAG00000009665lsm59585.057Poecilia_latipinna
ENSFHEG00000004011lsm59481.609ENSPMEG00000022265lsm59581.609Poecilia_mexicana
ENSFHEG00000004011lsm56685.484ENSPREG00000022452lsm510085.484Poecilia_reticulata
ENSFHEG00000004011lsm59678.889ENSPPYG00000017661LSM59978.889Pongo_abelii
ENSFHEG00000004011lsm58079.730ENSPCAG00000013740LSM59975.000Procavia_capensis
ENSFHEG00000004011lsm59676.667ENSPVAG00000009786LSM59976.667Pteropus_vampyrus
ENSFHEG00000004011lsm59779.775ENSPNYG00000022236lsm510079.775Pundamilia_nyererei
ENSFHEG00000004011lsm59480.460ENSPNAG00000001887lsm59580.460Pygocentrus_nattereri
ENSFHEG00000004011lsm59676.667ENSRNOG00000042126Lsm59976.667Rattus_norvegicus
ENSFHEG00000004011lsm59476.667ENSRNOG00000027305AABR07065089.19876.667Rattus_norvegicus
ENSFHEG00000004011lsm59676.667ENSRBIG00000030714-9976.667Rhinopithecus_bieti
ENSFHEG00000004011lsm59676.667ENSRBIG00000027803-10082.258Rhinopithecus_bieti
ENSFHEG00000004011lsm59675.556ENSRBIG00000024431-9975.556Rhinopithecus_bieti
ENSFHEG00000004011lsm59676.667ENSRBIG00000030340-9976.667Rhinopithecus_bieti
ENSFHEG00000004011lsm59676.667ENSRROG00000023884-9976.667Rhinopithecus_roxellana
ENSFHEG00000004011lsm59676.667ENSRROG00000004655-9976.667Rhinopithecus_roxellana
ENSFHEG00000004011lsm59676.667ENSRROG00000042782-10082.258Rhinopithecus_roxellana
ENSFHEG00000004011lsm57742.857YER146W-8342.857Saccharomyces_cerevisiae
ENSFHEG00000004011lsm59676.667ENSSBOG00000012312LSM59976.667Saimiri_boliviensis_boliviensis
ENSFHEG00000004011lsm56975.385ENSSBOG00000034794-8175.385Saimiri_boliviensis_boliviensis
ENSFHEG00000004011lsm59675.556ENSSBOG00000019124-9975.556Saimiri_boliviensis_boliviensis
ENSFHEG00000004011lsm510076.087ENSSFOG00015010099lsm510076.087Scleropages_formosus
ENSFHEG00000004011lsm55579.167ENSSMAG00000007895lsm58179.167Scophthalmus_maximus
ENSFHEG00000004011lsm56685.484ENSSDUG00000010762lsm510085.484Seriola_dumerili
ENSFHEG00000004011lsm57669.014ENSSLDG00000008014-8569.014Seriola_lalandi_dorsalis
ENSFHEG00000004011lsm510077.174ENSSLDG00000025242lsm510077.174Seriola_lalandi_dorsalis
ENSFHEG00000004011lsm58253.947ENSSARG00000003330LSM58453.947Sorex_araneus
ENSFHEG00000004011lsm58284.211ENSSPUG00000002690LSM510080.645Sphenodon_punctatus
ENSFHEG00000004011lsm55579.167ENSSPAG00000005435lsm58179.167Stegastes_partitus
ENSFHEG00000004011lsm59676.667ENSSSCG00000026064-9976.667Sus_scrofa
ENSFHEG00000004011lsm55376.471ENSSSCG00000029661-9467.647Sus_scrofa
ENSFHEG00000004011lsm59875.824ENSTGUG00000017539LSM59975.824Taeniopygia_guttata
ENSFHEG00000004011lsm58970.455ENSTRUG00000017749lsm56770.455Takifugu_rubripes
ENSFHEG00000004011lsm59480.460ENSTNIG00000008695lsm59880.460Tetraodon_nigroviridis
ENSFHEG00000004011lsm59676.667ENSTBEG00000004876LSM59976.667Tupaia_belangeri
ENSFHEG00000004011lsm59676.667ENSTTRG00000004237LSM59976.667Tursiops_truncatus
ENSFHEG00000004011lsm55674.510ENSUAMG00000009786LSM56674.510Ursus_americanus
ENSFHEG00000004011lsm58284.211ENSUMAG00000002625LSM55584.211Ursus_maritimus
ENSFHEG00000004011lsm59676.667ENSVPAG00000009985LSM59976.667Vicugna_pacos
ENSFHEG00000004011lsm59676.667ENSVVUG00000021311LSM59976.667Vulpes_vulpes
ENSFHEG00000004011lsm58178.667ENSXETG00000026465lsm59078.667Xenopus_tropicalis
ENSFHEG00000004011lsm56685.484ENSXCOG00000015348lsm510085.484Xiphophorus_couchianus
ENSFHEG00000004011lsm59485.057ENSXMAG00000029988lsm59585.057Xiphophorus_maculatus

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