EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000004016 (Gene tree)
Gene ID: 105935712
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Minus strand
Length: 9804 bases
Position: chrKN811461.1:527746-537549
Accession: 105935712
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000023176	TruB_N	PF01509.18	1e-46	1	1
ENSFHEP00000023181	TruB_N	PF01509.18	1.4e-41	1	2
ENSFHEP00000023181	TruB_N	PF01509.18	1.4e-41	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000010992	-	2871	-	ENSFHEP00000023181	332 (aa)	-	-
ENSFHET00000010999	-	2748	XM_012876263	ENSFHEP00000023176	291 (aa)	XP_012731717	UPI0006447D37

Gene Model

Click here to download ENSFHEG00000004016's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000004016's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000004016	trub1	67	31.658	ENSFHEG00000014655	trub2	57	31.658

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000004016	trub1	84	66.531	ENSG00000165832	TRUB1	70	66.531	Homo_sapiens
ENSFHEG00000004016	trub1	90	82.443	ENSAPOG00000020565	trub1	99	80.220	Acanthochromis_polyacanthus
ENSFHEG00000004016	trub1	84	66.397	ENSAMEG00000014931	TRUB1	70	66.397	Ailuropoda_melanoleuca
ENSFHEG00000004016	trub1	94	77.899	ENSACIG00000003060	trub1	92	77.899	Amphilophus_citrinellus
ENSFHEG00000004016	trub1	90	83.206	ENSAOCG00000017188	trub1	99	80.952	Amphiprion_ocellaris
ENSFHEG00000004016	trub1	90	83.588	ENSAPEG00000015209	trub1	99	81.319	Amphiprion_percula
ENSFHEG00000004016	trub1	84	86.122	ENSATEG00000023291	trub1	88	86.122	Anabas_testudineus
ENSFHEG00000004016	trub1	84	68.852	ENSAPLG00000006808	TRUB1	87	68.852	Anas_platyrhynchos
ENSFHEG00000004016	trub1	84	64.082	ENSACAG00000009282	TRUB1	88	64.082	Anolis_carolinensis
ENSFHEG00000004016	trub1	84	66.531	ENSANAG00000022870	TRUB1	70	66.531	Aotus_nancymaae
ENSFHEG00000004016	trub1	93	82.721	ENSACLG00000000823	trub1	98	82.721	Astatotilapia_calliptera
ENSFHEG00000004016	trub1	92	71.111	ENSAMXG00000015845	trub1	87	73.077	Astyanax_mexicanus
ENSFHEG00000004016	trub1	89	63.846	ENSBTAG00000012955	TRUB1	70	66.531	Bos_taurus
ENSFHEG00000004016	trub1	84	66.531	ENSCJAG00000047815	TRUB1	70	66.531	Callithrix_jacchus
ENSFHEG00000004016	trub1	84	66.939	ENSCAFG00000011688	TRUB1	70	66.939	Canis_familiaris
ENSFHEG00000004016	trub1	84	66.939	ENSCAFG00020013237	TRUB1	70	66.939	Canis_lupus_dingo
ENSFHEG00000004016	trub1	89	63.846	ENSCHIG00000020884	TRUB1	73	66.531	Capra_hircus
ENSFHEG00000004016	trub1	84	65.714	ENSTSYG00000000446	TRUB1	70	65.714	Carlito_syrichta
ENSFHEG00000004016	trub1	73	60.377	ENSCAPG00000017088	TRUB1	82	60.377	Cavia_aperea
ENSFHEG00000004016	trub1	67	63.590	ENSCPOG00000030129	-	75	63.590	Cavia_porcellus
ENSFHEG00000004016	trub1	66	64.583	ENSCPOG00000040236	-	77	64.583	Cavia_porcellus
ENSFHEG00000004016	trub1	84	66.531	ENSCCAG00000028842	TRUB1	70	66.531	Cebus_capucinus
ENSFHEG00000004016	trub1	84	66.531	ENSCATG00000033431	TRUB1	70	66.531	Cercocebus_atys
ENSFHEG00000004016	trub1	63	65.385	ENSCLAG00000008664	TRUB1	75	65.385	Chinchilla_lanigera
ENSFHEG00000004016	trub1	84	66.531	ENSCSAG00000004891	TRUB1	70	66.531	Chlorocebus_sabaeus
ENSFHEG00000004016	trub1	83	60.331	ENSCHOG00000011931	TRUB1	62	69.811	Choloepus_hoffmanni
ENSFHEG00000004016	trub1	84	70.204	ENSCPBG00000003051	TRUB1	84	70.204	Chrysemys_picta_bellii
ENSFHEG00000004016	trub1	84	66.531	ENSCANG00000029445	TRUB1	70	66.531	Colobus_angolensis_palliatus
ENSFHEG00000004016	trub1	81	62.185	ENSCGRG00001016772	-	80	62.083	Cricetulus_griseus_chok1gshd
ENSFHEG00000004016	trub1	90	54.167	ENSCGRG00001010322	-	73	54.244	Cricetulus_griseus_chok1gshd
ENSFHEG00000004016	trub1	90	61.742	ENSCGRG00000010806	Trub1	83	61.624	Cricetulus_griseus_crigri
ENSFHEG00000004016	trub1	90	74.046	ENSCSEG00000011261	trub1	85	74.046	Cynoglossus_semilaevis
ENSFHEG00000004016	trub1	97	77.211	ENSCVAG00000008791	trub1	90	77.211	Cyprinodon_variegatus
ENSFHEG00000004016	trub1	85	72.984	ENSDARG00000053805	trub1	99	79.412	Danio_rerio
ENSFHEG00000004016	trub1	84	64.898	ENSDNOG00000001069	TRUB1	70	64.898	Dasypus_novemcinctus
ENSFHEG00000004016	trub1	82	66.109	ENSDORG00000010431	Trub1	71	65.854	Dipodomys_ordii
ENSFHEG00000004016	trub1	61	64.286	ENSETEG00000009183	TRUB1	59	64.286	Echinops_telfairi
ENSFHEG00000004016	trub1	84	66.939	ENSEASG00005014739	TRUB1	70	66.939	Equus_asinus_asinus
ENSFHEG00000004016	trub1	84	66.939	ENSECAG00000007177	TRUB1	70	66.939	Equus_caballus
ENSFHEG00000004016	trub1	84	58.776	ENSEEUG00000013993	TRUB1	61	66.972	Erinaceus_europaeus
ENSFHEG00000004016	trub1	90	75.479	ENSELUG00000000502	trub1	91	75.479	Esox_lucius
ENSFHEG00000004016	trub1	84	66.939	ENSFCAG00000031927	TRUB1	70	66.939	Felis_catus
ENSFHEG00000004016	trub1	74	68.519	ENSFALG00000002232	TRUB1	83	68.519	Ficedula_albicollis
ENSFHEG00000004016	trub1	63	67.033	ENSFDAG00000008140	TRUB1	75	67.033	Fukomys_damarensis
ENSFHEG00000004016	trub1	93	63.704	ENSGALG00000009091	TRUB1	94	63.704	Gallus_gallus
ENSFHEG00000004016	trub1	88	84.884	ENSGAFG00000009193	trub1	90	83.721	Gambusia_affinis
ENSFHEG00000004016	trub1	67	83.163	ENSGACG00000015387	trub1	96	83.163	Gasterosteus_aculeatus
ENSFHEG00000004016	trub1	89	67.954	ENSGAGG00000009758	TRUB1	73	67.954	Gopherus_agassizii
ENSFHEG00000004016	trub1	84	66.531	ENSGGOG00000004583	TRUB1	70	66.531	Gorilla_gorilla
ENSFHEG00000004016	trub1	93	82.353	ENSHBUG00000016787	trub1	98	82.353	Haplochromis_burtoni
ENSFHEG00000004016	trub1	84	66.531	ENSHGLG00000015314	TRUB1	70	66.531	Heterocephalus_glaber_female
ENSFHEG00000004016	trub1	63	66.484	ENSHGLG00100009183	TRUB1	77	66.484	Heterocephalus_glaber_male
ENSFHEG00000004016	trub1	92	79.926	ENSHCOG00000017877	trub1	97	79.926	Hippocampus_comes
ENSFHEG00000004016	trub1	96	69.504	ENSIPUG00000017559	trub1	99	69.504	Ictalurus_punctatus
ENSFHEG00000004016	trub1	86	65.079	ENSSTOG00000003641	TRUB1	73	66.122	Ictidomys_tridecemlineatus
ENSFHEG00000004016	trub1	91	62.172	ENSJJAG00000011800	Trub1	79	62.172	Jaculus_jaculus
ENSFHEG00000004016	trub1	95	83.333	ENSKMAG00000006232	trub1	99	83.333	Kryptolebias_marmoratus
ENSFHEG00000004016	trub1	98	77.817	ENSLBEG00000026722	trub1	99	77.817	Labrus_bergylta
ENSFHEG00000004016	trub1	89	70.000	ENSLACG00000014885	TRUB1	86	70.000	Latimeria_chalumnae
ENSFHEG00000004016	trub1	97	68.794	ENSLOCG00000012979	trub1	95	68.794	Lepisosteus_oculatus
ENSFHEG00000004016	trub1	84	67.347	ENSLAFG00000015452	TRUB1	70	67.347	Loxodonta_africana
ENSFHEG00000004016	trub1	84	66.531	ENSMFAG00000031767	TRUB1	70	66.531	Macaca_fascicularis
ENSFHEG00000004016	trub1	84	66.531	ENSMMUG00000001902	TRUB1	70	66.531	Macaca_mulatta
ENSFHEG00000004016	trub1	84	62.041	ENSMNEG00000044646	TRUB1	69	62.041	Macaca_nemestrina
ENSFHEG00000004016	trub1	84	66.531	ENSMLEG00000042655	TRUB1	70	66.531	Mandrillus_leucophaeus
ENSFHEG00000004016	trub1	93	82.721	ENSMZEG00005024095	trub1	98	82.721	Maylandia_zebra
ENSFHEG00000004016	trub1	93	63.704	ENSMGAG00000011135	TRUB1	92	63.704	Meleagris_gallopavo
ENSFHEG00000004016	trub1	90	59.470	ENSMAUG00000011101	Trub1	80	59.410	Mesocricetus_auratus
ENSFHEG00000004016	trub1	84	66.122	ENSMICG00000016324	TRUB1	70	66.122	Microcebus_murinus
ENSFHEG00000004016	trub1	82	65.966	ENSMOCG00000017759	Trub1	74	65.714	Microtus_ochrogaster
ENSFHEG00000004016	trub1	84	67.623	ENSMODG00000009676	TRUB1	71	64.729	Monodelphis_domestica
ENSFHEG00000004016	trub1	83	66.116	MGP_CAROLIEiJ_G0023100	Trub1	76	66.310	Mus_caroli
ENSFHEG00000004016	trub1	83	65.289	ENSMUSG00000025086	Trub1	76	65.241	Mus_musculus
ENSFHEG00000004016	trub1	85	65.447	MGP_PahariEiJ_G0014588	Trub1	73	65.447	Mus_pahari
ENSFHEG00000004016	trub1	83	65.289	MGP_SPRETEiJ_G0024021	Trub1	76	65.241	Mus_spretus
ENSFHEG00000004016	trub1	84	66.939	ENSMPUG00000003556	TRUB1	70	66.939	Mustela_putorius_furo
ENSFHEG00000004016	trub1	84	66.122	ENSMLUG00000017686	TRUB1	72	66.122	Myotis_lucifugus
ENSFHEG00000004016	trub1	84	67.347	ENSNGAG00000018682	Trub1	70	67.347	Nannospalax_galili
ENSFHEG00000004016	trub1	88	83.984	ENSNBRG00000023393	trub1	91	83.984	Neolamprologus_brichardi
ENSFHEG00000004016	trub1	84	66.531	ENSNLEG00000016345	TRUB1	70	66.531	Nomascus_leucogenys
ENSFHEG00000004016	trub1	69	69.652	ENSMEUG00000006603	TRUB1	76	68.447	Notamacropus_eugenii
ENSFHEG00000004016	trub1	85	65.854	ENSOPRG00000009371	TRUB1	72	65.854	Ochotona_princeps
ENSFHEG00000004016	trub1	86	64.800	ENSODEG00000010854	TRUB1	72	64.800	Octodon_degus
ENSFHEG00000004016	trub1	92	82.900	ENSONIG00000007249	trub1	98	82.900	Oreochromis_niloticus
ENSFHEG00000004016	trub1	86	65.600	ENSOANG00000001556	TRUB1	86	63.602	Ornithorhynchus_anatinus
ENSFHEG00000004016	trub1	84	66.122	ENSOCUG00000009456	TRUB1	71	66.122	Oryctolagus_cuniculus
ENSFHEG00000004016	trub1	93	79.121	ENSORLG00000029719	trub1	98	79.121	Oryzias_latipes
ENSFHEG00000004016	trub1	93	78.755	ENSORLG00020016767	trub1	96	78.755	Oryzias_latipes_hni
ENSFHEG00000004016	trub1	96	75.986	ENSORLG00015014728	trub1	100	75.986	Oryzias_latipes_hsok
ENSFHEG00000004016	trub1	89	82.239	ENSOMEG00000014556	trub1	91	82.239	Oryzias_melastigma
ENSFHEG00000004016	trub1	84	66.531	ENSOGAG00000015895	TRUB1	70	66.531	Otolemur_garnettii
ENSFHEG00000004016	trub1	84	64.683	ENSOARG00000015591	TRUB1	72	64.683	Ovis_aries
ENSFHEG00000004016	trub1	84	66.531	ENSPPAG00000043645	TRUB1	70	66.531	Pan_paniscus
ENSFHEG00000004016	trub1	84	66.531	ENSPPRG00000007096	TRUB1	70	66.531	Panthera_pardus
ENSFHEG00000004016	trub1	84	66.531	ENSPTIG00000006378	TRUB1	70	66.531	Panthera_tigris_altaica
ENSFHEG00000004016	trub1	84	66.531	ENSPTRG00000002964	TRUB1	70	66.531	Pan_troglodytes
ENSFHEG00000004016	trub1	84	66.531	ENSPANG00000020712	TRUB1	70	66.531	Papio_anubis
ENSFHEG00000004016	trub1	57	78.916	ENSPKIG00000003852	trub1	71	78.916	Paramormyrops_kingsleyae
ENSFHEG00000004016	trub1	84	69.796	ENSPSIG00000012877	TRUB1	84	69.796	Pelodiscus_sinensis
ENSFHEG00000004016	trub1	96	73.571	ENSPMGG00000000075	trub1	99	73.571	Periophthalmus_magnuspinnatus
ENSFHEG00000004016	trub1	92	62.362	ENSPEMG00000011156	Trub1	80	62.362	Peromyscus_maniculatus_bairdii
ENSFHEG00000004016	trub1	84	67.213	ENSPCIG00000009729	TRUB1	69	65.000	Phascolarctos_cinereus
ENSFHEG00000004016	trub1	93	86.347	ENSPFOG00000009950	trub1	99	86.347	Poecilia_formosa
ENSFHEG00000004016	trub1	95	86.182	ENSPLAG00000013855	trub1	96	86.182	Poecilia_latipinna
ENSFHEG00000004016	trub1	94	86.447	ENSPMEG00000009064	trub1	98	86.447	Poecilia_mexicana
ENSFHEG00000004016	trub1	95	86.909	ENSPREG00000003343	trub1	99	86.909	Poecilia_reticulata
ENSFHEG00000004016	trub1	84	66.122	ENSPPYG00000002676	TRUB1	70	66.122	Pongo_abelii
ENSFHEG00000004016	trub1	84	61.224	ENSPCAG00000008427	TRUB1	70	61.224	Procavia_capensis
ENSFHEG00000004016	trub1	84	61.224	ENSPCOG00000024360	TRUB1	68	60.408	Propithecus_coquereli
ENSFHEG00000004016	trub1	69	68.657	ENSPVAG00000007575	TRUB1	76	68.657	Pteropus_vampyrus
ENSFHEG00000004016	trub1	93	82.353	ENSPNYG00000018614	trub1	98	82.353	Pundamilia_nyererei
ENSFHEG00000004016	trub1	94	61.818	ENSPNAG00000006881	trub1	90	61.091	Pygocentrus_nattereri
ENSFHEG00000004016	trub1	85	64.634	ENSRNOG00000017321	Trub1	72	64.634	Rattus_norvegicus
ENSFHEG00000004016	trub1	84	57.490	ENSRBIG00000033423	TRUB1	66	64.865	Rhinopithecus_bieti
ENSFHEG00000004016	trub1	84	66.531	ENSRROG00000033902	TRUB1	70	66.531	Rhinopithecus_roxellana
ENSFHEG00000004016	trub1	84	66.531	ENSSBOG00000024237	TRUB1	70	66.531	Saimiri_boliviensis_boliviensis
ENSFHEG00000004016	trub1	73	68.837	ENSSHAG00000009346	TRUB1	72	68.837	Sarcophilus_harrisii
ENSFHEG00000004016	trub1	89	76.062	ENSSFOG00015022124	trub1	88	76.062	Scleropages_formosus
ENSFHEG00000004016	trub1	93	81.250	ENSSMAG00000001020	trub1	97	81.250	Scophthalmus_maximus
ENSFHEG00000004016	trub1	95	81.818	ENSSDUG00000016414	trub1	99	81.818	Seriola_dumerili
ENSFHEG00000004016	trub1	92	83.271	ENSSLDG00000015486	trub1	97	83.271	Seriola_lalandi_dorsalis
ENSFHEG00000004016	trub1	90	65.152	ENSSPUG00000001642	TRUB1	91	65.152	Sphenodon_punctatus
ENSFHEG00000004016	trub1	95	80.797	ENSSPAG00000001217	trub1	99	80.797	Stegastes_partitus
ENSFHEG00000004016	trub1	89	63.320	ENSSSCG00000010653	TRUB1	71	65.984	Sus_scrofa
ENSFHEG00000004016	trub1	84	68.163	ENSTGUG00000010971	TRUB1	90	66.142	Taeniopygia_guttata
ENSFHEG00000004016	trub1	73	57.075	ENSTBEG00000002880	TRUB1	83	57.075	Tupaia_belangeri
ENSFHEG00000004016	trub1	74	65.278	ENSTTRG00000005767	TRUB1	77	68.657	Tursiops_truncatus
ENSFHEG00000004016	trub1	84	66.939	ENSUAMG00000024876	TRUB1	70	66.939	Ursus_americanus
ENSFHEG00000004016	trub1	84	66.531	ENSUMAG00000002411	TRUB1	79	65.174	Ursus_maritimus
ENSFHEG00000004016	trub1	89	64.231	ENSVPAG00000005507	TRUB1	70	66.939	Vicugna_pacos
ENSFHEG00000004016	trub1	84	66.939	ENSVVUG00000010085	TRUB1	59	66.939	Vulpes_vulpes
ENSFHEG00000004016	trub1	85	67.480	ENSXETG00000023828	trub1	89	67.480	Xenopus_tropicalis
ENSFHEG00000004016	trub1	86	88.353	ENSXCOG00000017847	trub1	88	88.353	Xiphophorus_couchianus
ENSFHEG00000004016	trub1	95	85.818	ENSXMAG00000014701	trub1	99	85.818	Xiphophorus_maculatus