EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000004093 (Gene tree)
Gene ID: 105931157
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Minus strand
Length: 226171 bases
Position: chrKN811367.1:1491019-1717189
Accession: 105931157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000003229	TUDOR	PF00567.24	2.1e-26	1	1
ENSFHEP00000003240	TUDOR	PF00567.24	8.7e-20	1	2
ENSFHEP00000003240	TUDOR	PF00567.24	8.7e-20	2	2
ENSFHEP00000003240	SNase	PF00565.17	1.8e-68	1	4
ENSFHEP00000003240	SNase	PF00565.17	1.8e-68	2	4
ENSFHEP00000003240	SNase	PF00565.17	1.8e-68	3	4
ENSFHEP00000003240	SNase	PF00565.17	1.8e-68	4	4
ENSFHEP00000003229	SNase	PF00565.17	7.3e-63	1	4
ENSFHEP00000003229	SNase	PF00565.17	7.3e-63	2	4
ENSFHEP00000003229	SNase	PF00565.17	7.3e-63	3	4
ENSFHEP00000003229	SNase	PF00565.17	7.3e-63	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000010899	-	4486	-	ENSFHEP00000003229	883 (aa)	-	-
ENSFHET00000010878	-	4001	XM_012869710	ENSFHEP00000003240	931 (aa)	XP_012725164	-

Gene Model

Click here to download ENSFHEG00000004093's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000004093's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000004093	snd1	97	84.750	ENSG00000197157	SND1	99	82.201	Homo_sapiens
ENSFHEG00000004093	snd1	99	95.314	ENSAPOG00000017599	snd1	100	93.233	Acanthochromis_polyacanthus
ENSFHEG00000004093	snd1	99	83.620	ENSAMEG00000004664	SND1	94	81.916	Ailuropoda_melanoleuca
ENSFHEG00000004093	snd1	99	91.581	ENSACIG00000003551	snd1	100	90.118	Amphilophus_citrinellus
ENSFHEG00000004093	snd1	99	94.539	ENSAOCG00000014166	snd1	100	92.911	Amphiprion_ocellaris
ENSFHEG00000004093	snd1	99	94.539	ENSAPEG00000007067	snd1	100	92.911	Amphiprion_percula
ENSFHEG00000004093	snd1	99	94.971	ENSATEG00000018475	snd1	87	94.971	Anabas_testudineus
ENSFHEG00000004093	snd1	97	84.633	ENSANAG00000034463	SND1	99	82.892	Aotus_nancymaae
ENSFHEG00000004093	snd1	99	93.970	ENSACLG00000022897	snd1	100	92.374	Astatotilapia_calliptera
ENSFHEG00000004093	snd1	99	89.931	ENSAMXG00000016318	snd1	99	88.172	Astyanax_mexicanus
ENSFHEG00000004093	snd1	97	84.866	ENSBTAG00000010692	SND1	99	82.309	Bos_taurus
ENSFHEG00000004093	snd1	99	47.176	WBGene00006626	tsn-1	99	46.512	Caenorhabditis_elegans
ENSFHEG00000004093	snd1	97	84.517	ENSCJAG00000017668	SND1	99	82.781	Callithrix_jacchus
ENSFHEG00000004093	snd1	99	83.927	ENSCAFG00000001700	SND1	99	82.201	Canis_familiaris
ENSFHEG00000004093	snd1	99	83.927	ENSCAFG00020021639	SND1	99	82.201	Canis_lupus_dingo
ENSFHEG00000004093	snd1	97	84.750	ENSCHIG00000023390	SND1	99	82.201	Capra_hircus
ENSFHEG00000004093	snd1	72	87.895	ENSTSYG00000004979	SND1	96	87.895	Carlito_syrichta
ENSFHEG00000004093	snd1	96	74.061	ENSCAPG00000010677	SND1	97	72.907	Cavia_aperea
ENSFHEG00000004093	snd1	97	84.517	ENSCPOG00000006251	SND1	99	81.985	Cavia_porcellus
ENSFHEG00000004093	snd1	97	84.633	ENSCCAG00000036847	SND1	99	82.093	Cebus_capucinus
ENSFHEG00000004093	snd1	97	84.983	ENSCATG00000035214	SND1	99	83.223	Cercocebus_atys
ENSFHEG00000004093	snd1	97	84.848	ENSCLAG00000011796	SND1	96	86.195	Chinchilla_lanigera
ENSFHEG00000004093	snd1	97	84.983	ENSCSAG00000010182	SND1	99	82.416	Chlorocebus_sabaeus
ENSFHEG00000004093	snd1	80	77.228	ENSCHOG00000002218	SND1	85	77.000	Choloepus_hoffmanni
ENSFHEG00000004093	snd1	99	84.343	ENSCPBG00000018094	SND1	100	82.277	Chrysemys_picta_bellii
ENSFHEG00000004093	snd1	97	56.863	ENSCING00000000524	-	99	54.828	Ciona_intestinalis
ENSFHEG00000004093	snd1	99	56.591	ENSCSAVG00000008807	-	99	55.080	Ciona_savignyi
ENSFHEG00000004093	snd1	97	84.983	ENSCANG00000035119	SND1	99	82.416	Colobus_angolensis_palliatus
ENSFHEG00000004093	snd1	97	84.051	ENSCGRG00001022514	Snd1	97	86.125	Cricetulus_griseus_chok1gshd
ENSFHEG00000004093	snd1	96	84.118	ENSCGRG00000012277	Snd1	99	82.340	Cricetulus_griseus_crigri
ENSFHEG00000004093	snd1	99	93.371	ENSCSEG00000008661	snd1	99	93.371	Cynoglossus_semilaevis
ENSFHEG00000004093	snd1	99	97.042	ENSCVAG00000010316	snd1	100	95.381	Cyprinodon_variegatus
ENSFHEG00000004093	snd1	99	88.309	ENSDARG00000006766	snd1	99	90.653	Danio_rerio
ENSFHEG00000004093	snd1	96	82.532	ENSDNOG00000006795	SND1	100	80.858	Dasypus_novemcinctus
ENSFHEG00000004093	snd1	97	84.517	ENSDORG00000000336	Snd1	99	81.985	Dipodomys_ordii
ENSFHEG00000004093	snd1	98	50.393	FBgn0035121	Tudor-SN	99	49.003	Drosophila_melanogaster
ENSFHEG00000004093	snd1	90	88.889	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSFHEG00000004093	snd1	62	66.846	ENSEBUG00000014201	-	84	76.630	Eptatretus_burgeri
ENSFHEG00000004093	snd1	97	84.633	ENSEASG00005008513	SND1	99	80.892	Equus_asinus_asinus
ENSFHEG00000004093	snd1	97	84.517	ENSECAG00000011451	SND1	99	81.985	Equus_caballus
ENSFHEG00000004093	snd1	97	77.066	ENSEEUG00000014737	SND1	99	72.708	Erinaceus_europaeus
ENSFHEG00000004093	snd1	99	88.182	ENSELUG00000001805	snd1	96	86.574	Esox_lucius
ENSFHEG00000004093	snd1	99	83.812	ENSFCAG00000008289	SND1	99	82.093	Felis_catus
ENSFHEG00000004093	snd1	97	84.284	ENSFDAG00000015881	SND1	99	81.769	Fukomys_damarensis
ENSFHEG00000004093	snd1	73	83.962	ENSGMOG00000018932	snd1	62	83.962	Gadus_morhua
ENSFHEG00000004093	snd1	99	96.587	ENSGAFG00000008421	snd1	100	94.952	Gambusia_affinis
ENSFHEG00000004093	snd1	100	59.915	ENSGACG00000019793	snd1	100	59.766	Gasterosteus_aculeatus
ENSFHEG00000004093	snd1	98	84.046	ENSGGOG00000009614	SND1	99	83.223	Gorilla_gorilla
ENSFHEG00000004093	snd1	99	93.857	ENSHBUG00000019135	snd1	100	92.266	Haplochromis_burtoni
ENSFHEG00000004093	snd1	97	84.284	ENSHGLG00000003618	SND1	97	86.125	Heterocephalus_glaber_female
ENSFHEG00000004093	snd1	99	83.295	ENSHGLG00100012449	SND1	99	81.613	Heterocephalus_glaber_male
ENSFHEG00000004093	snd1	99	92.114	ENSHCOG00000005266	snd1	100	90.226	Hippocampus_comes
ENSFHEG00000004093	snd1	99	88.571	ENSIPUG00000013279	snd1	99	86.896	Ictalurus_punctatus
ENSFHEG00000004093	snd1	97	84.633	ENSSTOG00000002140	SND1	99	82.093	Ictidomys_tridecemlineatus
ENSFHEG00000004093	snd1	97	84.633	ENSJJAG00000009561	Snd1	99	82.093	Jaculus_jaculus
ENSFHEG00000004093	snd1	99	95.563	ENSKMAG00000016997	snd1	100	93.878	Kryptolebias_marmoratus
ENSFHEG00000004093	snd1	99	92.800	ENSLBEG00000013563	snd1	100	90.977	Labrus_bergylta
ENSFHEG00000004093	snd1	97	88.915	ENSLOCG00000015537	snd1	99	86.141	Lepisosteus_oculatus
ENSFHEG00000004093	snd1	99	83.982	ENSLAFG00000009696	SND1	99	82.258	Loxodonta_africana
ENSFHEG00000004093	snd1	97	84.983	ENSMFAG00000038114	SND1	99	83.223	Macaca_fascicularis
ENSFHEG00000004093	snd1	97	84.983	ENSMMUG00000015432	SND1	96	86.565	Macaca_mulatta
ENSFHEG00000004093	snd1	97	84.983	ENSMNEG00000039808	SND1	97	88.007	Macaca_nemestrina
ENSFHEG00000004093	snd1	97	84.866	ENSMLEG00000029040	SND1	97	88.007	Mandrillus_leucophaeus
ENSFHEG00000004093	snd1	99	93.970	ENSMAMG00000011739	snd1	100	92.374	Mastacembelus_armatus
ENSFHEG00000004093	snd1	99	94.400	ENSMZEG00005005681	snd1	98	94.400	Maylandia_zebra
ENSFHEG00000004093	snd1	97	84.866	ENSMICG00000000097	SND1	99	82.309	Microcebus_murinus
ENSFHEG00000004093	snd1	97	84.633	ENSMOCG00000005040	Snd1	99	82.093	Microtus_ochrogaster
ENSFHEG00000004093	snd1	99	92.833	ENSMMOG00000001795	snd1	100	91.407	Mola_mola
ENSFHEG00000004093	snd1	97	83.935	ENSMODG00000015182	SND1	99	81.446	Monodelphis_domestica
ENSFHEG00000004093	snd1	99	93.829	ENSMALG00000012071	snd1	100	91.729	Monopterus_albus
ENSFHEG00000004093	snd1	97	84.168	MGP_CAROLIEiJ_G0028159	Snd1	98	85.666	Mus_caroli
ENSFHEG00000004093	snd1	97	83.935	ENSMUSG00000001424	Snd1	98	83.993	Mus_musculus
ENSFHEG00000004093	snd1	97	84.168	MGP_PahariEiJ_G0021917	Snd1	99	85.666	Mus_pahari
ENSFHEG00000004093	snd1	97	84.168	MGP_SPRETEiJ_G0029159	Snd1	98	84.323	Mus_spretus
ENSFHEG00000004093	snd1	99	83.697	ENSMPUG00000006545	SND1	99	81.985	Mustela_putorius_furo
ENSFHEG00000004093	snd1	96	83.508	ENSMLUG00000017130	SND1	99	81.788	Myotis_lucifugus
ENSFHEG00000004093	snd1	97	84.517	ENSNGAG00000011186	Snd1	99	81.985	Nannospalax_galili
ENSFHEG00000004093	snd1	99	93.970	ENSNBRG00000006681	snd1	100	92.374	Neolamprologus_brichardi
ENSFHEG00000004093	snd1	99	83.982	ENSNLEG00000012263	SND1	98	86.341	Nomascus_leucogenys
ENSFHEG00000004093	snd1	91	88.889	ENSOPRG00000013405	SND1	92	88.889	Ochotona_princeps
ENSFHEG00000004093	snd1	97	84.848	ENSODEG00000011502	SND1	100	81.847	Octodon_degus
ENSFHEG00000004093	snd1	99	93.857	ENSONIG00000011481	snd1	97	92.266	Oreochromis_niloticus
ENSFHEG00000004093	snd1	97	83.607	ENSOANG00000000817	SND1	99	80.538	Ornithorhynchus_anatinus
ENSFHEG00000004093	snd1	99	83.181	ENSOCUG00000001620	SND1	99	81.505	Oryctolagus_cuniculus
ENSFHEG00000004093	snd1	99	93.288	ENSORLG00000015201	snd1	100	91.837	Oryzias_latipes
ENSFHEG00000004093	snd1	99	93.515	ENSORLG00020013991	snd1	100	92.052	Oryzias_latipes_hni
ENSFHEG00000004093	snd1	99	93.515	ENSORLG00015012436	snd1	100	92.052	Oryzias_latipes_hsok
ENSFHEG00000004093	snd1	99	93.629	ENSOMEG00000006406	snd1	100	92.159	Oryzias_melastigma
ENSFHEG00000004093	snd1	97	84.785	ENSOGAG00000013356	SND1	94	82.239	Otolemur_garnettii
ENSFHEG00000004093	snd1	96	82.374	ENSOARG00000002149	SND1	100	80.706	Ovis_aries
ENSFHEG00000004093	snd1	97	84.866	ENSPPAG00000042947	SND1	99	83.113	Pan_paniscus
ENSFHEG00000004093	snd1	99	83.812	ENSPPRG00000004494	SND1	99	82.093	Panthera_pardus
ENSFHEG00000004093	snd1	99	83.697	ENSPTIG00000014214	SND1	99	81.985	Panthera_tigris_altaica
ENSFHEG00000004093	snd1	97	84.866	ENSPTRG00000023911	SND1	99	83.113	Pan_troglodytes
ENSFHEG00000004093	snd1	96	85.059	ENSPANG00000011997	SND1	99	83.223	Papio_anubis
ENSFHEG00000004093	snd1	98	87.026	ENSPKIG00000023494	snd1	99	84.418	Paramormyrops_kingsleyae
ENSFHEG00000004093	snd1	94	94.005	ENSPMGG00000003629	snd1	99	94.005	Periophthalmus_magnuspinnatus
ENSFHEG00000004093	snd1	97	84.400	ENSPEMG00000010240	Snd1	99	81.877	Peromyscus_maniculatus_bairdii
ENSFHEG00000004093	snd1	96	76.202	ENSPMAG00000007915	-	96	76.202	Petromyzon_marinus
ENSFHEG00000004093	snd1	97	84.517	ENSPCIG00000011561	SND1	99	81.985	Phascolarctos_cinereus
ENSFHEG00000004093	snd1	99	96.473	ENSPFOG00000001557	snd1	100	94.844	Poecilia_formosa
ENSFHEG00000004093	snd1	99	96.473	ENSPLAG00000018459	snd1	97	94.844	Poecilia_latipinna
ENSFHEG00000004093	snd1	99	96.701	ENSPMEG00000006803	snd1	100	95.059	Poecilia_mexicana
ENSFHEG00000004093	snd1	100	96.036	ENSPREG00000002189	snd1	100	94.629	Poecilia_reticulata
ENSFHEG00000004093	snd1	91	88.889	ENSPPYG00000017972	SND1	99	88.889	Pongo_abelii
ENSFHEG00000004093	snd1	97	74.040	ENSPCAG00000011305	SND1	99	72.276	Procavia_capensis
ENSFHEG00000004093	snd1	97	84.983	ENSPCOG00000026791	SND1	100	83.241	Propithecus_coquereli
ENSFHEG00000004093	snd1	97	82.538	ENSPVAG00000013945	SND1	99	80.151	Pteropus_vampyrus
ENSFHEG00000004093	snd1	99	93.857	ENSPNYG00000000932	snd1	100	92.266	Pundamilia_nyererei
ENSFHEG00000004093	snd1	99	90.091	ENSPNAG00000001206	snd1	99	88.817	Pygocentrus_nattereri
ENSFHEG00000004093	snd1	97	84.051	ENSRNOG00000031173	Snd1	100	81.203	Rattus_norvegicus
ENSFHEG00000004093	snd1	72	88.447	ENSRBIG00000027782	-	93	88.447	Rhinopithecus_bieti
ENSFHEG00000004093	snd1	98	84.162	ENSRROG00000033020	SND1	99	82.416	Rhinopithecus_roxellana
ENSFHEG00000004093	snd1	97	84.517	ENSSBOG00000032461	SND1	96	85.908	Saimiri_boliviensis_boliviensis
ENSFHEG00000004093	snd1	97	80.796	ENSSHAG00000015359	SND1	100	79.231	Sarcophilus_harrisii
ENSFHEG00000004093	snd1	97	88.439	ENSSFOG00015001103	snd1	99	85.486	Scleropages_formosus
ENSFHEG00000004093	snd1	99	93.288	ENSSMAG00000001932	snd1	95	91.837	Scophthalmus_maximus
ENSFHEG00000004093	snd1	99	94.312	ENSSDUG00000002699	snd1	94	92.696	Seriola_dumerili
ENSFHEG00000004093	snd1	99	86.348	ENSSLDG00000001950	snd1	100	85.177	Seriola_lalandi_dorsalis
ENSFHEG00000004093	snd1	89	80.854	ENSSARG00000004877	SND1	92	80.854	Sorex_araneus
ENSFHEG00000004093	snd1	73	80.272	ENSSPUG00000017586	SND1	97	80.272	Sphenodon_punctatus
ENSFHEG00000004093	snd1	75	94.247	ENSSPAG00000021398	snd1	99	94.247	Stegastes_partitus
ENSFHEG00000004093	snd1	97	84.633	ENSSSCG00000016590	SND1	99	82.093	Sus_scrofa
ENSFHEG00000004093	snd1	99	92.553	ENSTRUG00000014067	snd1	100	90.011	Takifugu_rubripes
ENSFHEG00000004093	snd1	99	92.036	ENSTNIG00000011019	snd1	98	93.289	Tetraodon_nigroviridis
ENSFHEG00000004093	snd1	96	79.176	ENSTBEG00000003999	SND1	100	79.176	Tupaia_belangeri
ENSFHEG00000004093	snd1	97	80.093	ENSTTRG00000006059	SND1	99	77.886	Tursiops_truncatus
ENSFHEG00000004093	snd1	86	83.061	ENSUAMG00000005604	-	93	80.220	Ursus_americanus
ENSFHEG00000004093	snd1	69	77.513	ENSUAMG00000002820	-	87	77.513	Ursus_americanus
ENSFHEG00000004093	snd1	99	83.927	ENSUMAG00000005960	SND1	99	82.201	Ursus_maritimus
ENSFHEG00000004093	snd1	75	88.889	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSFHEG00000004093	snd1	99	83.812	ENSVVUG00000007226	SND1	99	82.093	Vulpes_vulpes
ENSFHEG00000004093	snd1	96	81.808	ENSXETG00000023043	snd1	98	80.653	Xenopus_tropicalis
ENSFHEG00000004093	snd1	94	94.838	ENSXCOG00000013629	snd1	98	94.838	Xiphophorus_couchianus
ENSFHEG00000004093	snd1	99	96.815	ENSXMAG00000011469	snd1	100	95.166	Xiphophorus_maculatus