EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000004263 (Gene tree)
Gene ID: 105938107
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Minus strand
Length: 12914 bases
Position: chrKN811533.1:1069317-1082230
Accession: 105938107
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000023298	SRP54	PF00448.22	4.3e-77	1	1
ENSFHEP00000003355	SRP54	PF00448.22	1.8e-57	1	2
ENSFHEP00000003355	SRP54	PF00448.22	1.8e-57	2	2
ENSFHEP00000003355	SRP54_N	PF02881.19	4.3e-20	1	1
ENSFHEP00000023298	SRP54_N	PF02881.19	4.6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000010677	-	2235	XM_012879730	ENSFHEP00000023298	504 (aa)	XP_012735184	UPI000644F869
ENSFHET00000010692	-	1404	-	ENSFHEP00000003355	467 (aa)	-	-

Gene Model

Click here to download ENSFHEG00000004263's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000004263's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000004263	srp54	100	95.437	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSFHEG00000004263	srp54	100	99.603	ENSAPOG00000011314	srp54	100	99.603	Acanthochromis_polyacanthus
ENSFHEG00000004263	srp54	100	95.437	ENSAMEG00000015544	SRP54	100	95.437	Ailuropoda_melanoleuca
ENSFHEG00000004263	srp54	97	92.478	ENSACIG00000022831	srp54	97	97.996	Amphilophus_citrinellus
ENSFHEG00000004263	srp54	100	99.603	ENSAOCG00000019401	srp54	100	99.603	Amphiprion_ocellaris
ENSFHEG00000004263	srp54	100	99.603	ENSAPEG00000001977	srp54	100	99.603	Amphiprion_percula
ENSFHEG00000004263	srp54	100	99.008	ENSATEG00000013877	srp54	100	99.008	Anabas_testudineus
ENSFHEG00000004263	srp54	94	94.726	ENSAPLG00000010125	SRP54	95	94.726	Anas_platyrhynchos
ENSFHEG00000004263	srp54	86	91.935	ENSACAG00000010631	-	100	91.935	Anolis_carolinensis
ENSFHEG00000004263	srp54	100	94.841	ENSACAG00000002103	-	100	94.841	Anolis_carolinensis
ENSFHEG00000004263	srp54	65	79.154	ENSACAG00000001124	-	100	79.154	Anolis_carolinensis
ENSFHEG00000004263	srp54	100	95.437	ENSANAG00000022133	SRP54	100	95.437	Aotus_nancymaae
ENSFHEG00000004263	srp54	100	99.206	ENSACLG00000015866	srp54	100	99.206	Astatotilapia_calliptera
ENSFHEG00000004263	srp54	100	97.619	ENSAMXG00000032669	SRP54	100	97.619	Astyanax_mexicanus
ENSFHEG00000004263	srp54	100	95.437	ENSBTAG00000019085	SRP54	100	95.437	Bos_taurus
ENSFHEG00000004263	srp54	98	72.691	WBGene00009012	F21D5.7	100	72.691	Caenorhabditis_elegans
ENSFHEG00000004263	srp54	100	95.437	ENSCJAG00000006581	SRP54	100	95.437	Callithrix_jacchus
ENSFHEG00000004263	srp54	100	95.437	ENSCAFG00000013331	SRP54	100	95.437	Canis_familiaris
ENSFHEG00000004263	srp54	100	95.437	ENSCAFG00020023427	SRP54	100	95.437	Canis_lupus_dingo
ENSFHEG00000004263	srp54	100	95.437	ENSCHIG00000026345	SRP54	100	95.437	Capra_hircus
ENSFHEG00000004263	srp54	94	83.789	ENSTSYG00000035333	-	93	83.789	Carlito_syrichta
ENSFHEG00000004263	srp54	100	95.238	ENSTSYG00000002680	-	100	95.238	Carlito_syrichta
ENSFHEG00000004263	srp54	94	61.224	ENSCAPG00000008780	SRP54	100	61.224	Cavia_aperea
ENSFHEG00000004263	srp54	100	95.040	ENSCPOG00000003691	SRP54	100	95.040	Cavia_porcellus
ENSFHEG00000004263	srp54	90	95.000	ENSCCAG00000024179	SRP54	100	95.227	Cebus_capucinus
ENSFHEG00000004263	srp54	100	95.437	ENSCATG00000034083	SRP54	100	95.437	Cercocebus_atys
ENSFHEG00000004263	srp54	100	95.437	ENSCLAG00000015076	SRP54	100	95.437	Chinchilla_lanigera
ENSFHEG00000004263	srp54	100	95.437	ENSCSAG00000015575	SRP54	100	95.437	Chlorocebus_sabaeus
ENSFHEG00000004263	srp54	95	84.407	ENSCHOG00000008986	SRP54	100	84.407	Choloepus_hoffmanni
ENSFHEG00000004263	srp54	100	95.437	ENSCPBG00000026195	SRP54	100	95.437	Chrysemys_picta_bellii
ENSFHEG00000004263	srp54	100	82.341	ENSCING00000007380	-	100	82.341	Ciona_intestinalis
ENSFHEG00000004263	srp54	100	95.437	ENSCANG00000028532	SRP54	100	95.437	Colobus_angolensis_palliatus
ENSFHEG00000004263	srp54	100	95.437	ENSCGRG00001009525	-	100	95.437	Cricetulus_griseus_chok1gshd
ENSFHEG00000004263	srp54	84	88.776	ENSCGRG00000009453	-	89	95.844	Cricetulus_griseus_crigri
ENSFHEG00000004263	srp54	100	98.611	ENSCSEG00000012392	srp54	100	98.611	Cynoglossus_semilaevis
ENSFHEG00000004263	srp54	100	99.206	ENSCVAG00000010395	srp54	100	99.206	Cyprinodon_variegatus
ENSFHEG00000004263	srp54	100	98.413	ENSDARG00000098367	srp54	100	98.413	Danio_rerio
ENSFHEG00000004263	srp54	100	95.437	ENSDNOG00000032525	SRP54	100	95.437	Dasypus_novemcinctus
ENSFHEG00000004263	srp54	96	75.388	ENSDORG00000005159	-	98	80.310	Dipodomys_ordii
ENSFHEG00000004263	srp54	96	78.969	FBgn0010747	Srp54k	98	78.514	Drosophila_melanogaster
ENSFHEG00000004263	srp54	100	94.246	ENSETEG00000016307	-	100	94.246	Echinops_telfairi
ENSFHEG00000004263	srp54	83	55.981	ENSETEG00000012102	-	99	55.981	Echinops_telfairi
ENSFHEG00000004263	srp54	100	88.095	ENSEBUG00000009437	-	100	88.095	Eptatretus_burgeri
ENSFHEG00000004263	srp54	100	95.437	ENSEASG00005002057	SRP54	100	95.437	Equus_asinus_asinus
ENSFHEG00000004263	srp54	99	95.181	ENSECAG00000018042	SRP54	98	95.181	Equus_caballus
ENSFHEG00000004263	srp54	100	79.762	ENSEEUG00000001511	SRP54	100	79.762	Erinaceus_europaeus
ENSFHEG00000004263	srp54	100	97.619	ENSELUG00000003395	srp54	100	97.619	Esox_lucius
ENSFHEG00000004263	srp54	100	95.238	ENSFCAG00000032033	SRP54	100	95.238	Felis_catus
ENSFHEG00000004263	srp54	100	95.040	ENSFALG00000005995	SRP54	100	95.040	Ficedula_albicollis
ENSFHEG00000004263	srp54	100	95.437	ENSFDAG00000016767	SRP54	100	95.437	Fukomys_damarensis
ENSFHEG00000004263	srp54	95	92.259	ENSGMOG00000011391	srp54	100	92.259	Gadus_morhua
ENSFHEG00000004263	srp54	100	95.040	ENSGALG00000023135	SRP54	100	95.040	Gallus_gallus
ENSFHEG00000004263	srp54	100	99.405	ENSGAFG00000011586	srp54	100	99.405	Gambusia_affinis
ENSFHEG00000004263	srp54	100	99.206	ENSGACG00000004181	srp54	100	99.309	Gasterosteus_aculeatus
ENSFHEG00000004263	srp54	100	95.437	ENSGAGG00000014766	SRP54	100	95.437	Gopherus_agassizii
ENSFHEG00000004263	srp54	100	95.437	ENSGGOG00000002926	SRP54	100	95.437	Gorilla_gorilla
ENSFHEG00000004263	srp54	100	99.206	ENSHBUG00000005678	srp54	100	99.206	Haplochromis_burtoni
ENSFHEG00000004263	srp54	100	95.437	ENSHGLG00000002850	SRP54	100	95.437	Heterocephalus_glaber_female
ENSFHEG00000004263	srp54	100	95.437	ENSHGLG00100005263	SRP54	100	95.437	Heterocephalus_glaber_male
ENSFHEG00000004263	srp54	100	66.535	ENSHGLG00100007281	-	100	66.535	Heterocephalus_glaber_male
ENSFHEG00000004263	srp54	100	97.817	ENSHCOG00000021127	srp54	100	97.817	Hippocampus_comes
ENSFHEG00000004263	srp54	100	97.619	ENSIPUG00000001420	srp54	100	97.619	Ictalurus_punctatus
ENSFHEG00000004263	srp54	100	95.437	ENSSTOG00000016023	SRP54	100	95.437	Ictidomys_tridecemlineatus
ENSFHEG00000004263	srp54	100	90.675	ENSJJAG00000013417	-	100	90.675	Jaculus_jaculus
ENSFHEG00000004263	srp54	87	73.864	ENSJJAG00000016404	-	100	73.864	Jaculus_jaculus
ENSFHEG00000004263	srp54	100	98.810	ENSKMAG00000007707	srp54	100	98.810	Kryptolebias_marmoratus
ENSFHEG00000004263	srp54	100	99.405	ENSLBEG00000018690	srp54	100	99.405	Labrus_bergylta
ENSFHEG00000004263	srp54	100	99.405	ENSLBEG00000021122	srp54	100	99.405	Labrus_bergylta
ENSFHEG00000004263	srp54	100	95.833	ENSLACG00000017890	SRP54	100	95.833	Latimeria_chalumnae
ENSFHEG00000004263	srp54	100	97.619	ENSLOCG00000009440	srp54	100	97.619	Lepisosteus_oculatus
ENSFHEG00000004263	srp54	100	95.437	ENSLAFG00000012007	SRP54	100	95.437	Loxodonta_africana
ENSFHEG00000004263	srp54	100	95.437	ENSMFAG00000044371	SRP54	100	95.437	Macaca_fascicularis
ENSFHEG00000004263	srp54	100	95.437	ENSMMUG00000015073	FAM177A1	100	95.437	Macaca_mulatta
ENSFHEG00000004263	srp54	100	95.437	ENSMNEG00000006947	SRP54	100	95.437	Macaca_nemestrina
ENSFHEG00000004263	srp54	100	95.437	ENSMLEG00000042251	SRP54	100	95.437	Mandrillus_leucophaeus
ENSFHEG00000004263	srp54	100	99.206	ENSMAMG00000004803	srp54	100	99.206	Mastacembelus_armatus
ENSFHEG00000004263	srp54	100	99.206	ENSMZEG00005027528	srp54	100	99.206	Maylandia_zebra
ENSFHEG00000004263	srp54	100	90.711	ENSMGAG00000012481	SRP54	100	90.711	Meleagris_gallopavo
ENSFHEG00000004263	srp54	100	95.635	ENSMAUG00000014447	-	100	95.635	Mesocricetus_auratus
ENSFHEG00000004263	srp54	100	95.437	ENSMICG00000010270	SRP54	100	95.437	Microcebus_murinus
ENSFHEG00000004263	srp54	87	95.455	ENSMOCG00000000948	-	100	95.455	Microtus_ochrogaster
ENSFHEG00000004263	srp54	97	92.731	ENSMMOG00000020303	srp54	99	96.916	Mola_mola
ENSFHEG00000004263	srp54	100	95.437	ENSMODG00000012925	-	100	95.437	Monodelphis_domestica
ENSFHEG00000004263	srp54	100	95.437	ENSMODG00000023150	-	100	95.437	Monodelphis_domestica
ENSFHEG00000004263	srp54	97	91.868	ENSMALG00000009163	srp54	98	98.871	Monopterus_albus
ENSFHEG00000004263	srp54	100	95.635	MGP_CAROLIEiJ_G0017754	-	100	95.635	Mus_caroli
ENSFHEG00000004263	srp54	100	95.635	ENSMUSG00000112449	Srp54b	100	95.635	Mus_musculus
ENSFHEG00000004263	srp54	100	94.841	ENSMUSG00000079108	Srp54c	100	94.841	Mus_musculus
ENSFHEG00000004263	srp54	100	95.635	ENSMUSG00000073079	Srp54a	100	96.364	Mus_musculus
ENSFHEG00000004263	srp54	100	95.635	MGP_PahariEiJ_G0029510	-	100	95.635	Mus_pahari
ENSFHEG00000004263	srp54	100	95.437	ENSMPUG00000016302	SRP54	100	95.437	Mustela_putorius_furo
ENSFHEG00000004263	srp54	100	94.841	ENSMLUG00000008958	SRP54	100	94.841	Myotis_lucifugus
ENSFHEG00000004263	srp54	100	86.310	ENSNGAG00000019806	-	100	86.310	Nannospalax_galili
ENSFHEG00000004263	srp54	87	99.318	ENSNBRG00000006000	srp54	100	99.318	Neolamprologus_brichardi
ENSFHEG00000004263	srp54	100	95.437	ENSNLEG00000003496	SRP54	100	95.437	Nomascus_leucogenys
ENSFHEG00000004263	srp54	72	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSFHEG00000004263	srp54	58	95.082	ENSOPRG00000014502	-	60	95.082	Ochotona_princeps
ENSFHEG00000004263	srp54	100	95.437	ENSODEG00000004865	SRP54	100	95.437	Octodon_degus
ENSFHEG00000004263	srp54	100	99.206	ENSONIG00000011768	srp54	100	99.206	Oreochromis_niloticus
ENSFHEG00000004263	srp54	100	95.437	ENSOANG00000014051	SRP54	100	95.437	Ornithorhynchus_anatinus
ENSFHEG00000004263	srp54	100	94.841	ENSOCUG00000007838	SRP54	100	94.841	Oryctolagus_cuniculus
ENSFHEG00000004263	srp54	100	99.405	ENSORLG00000010027	srp54	100	99.405	Oryzias_latipes
ENSFHEG00000004263	srp54	100	99.405	ENSORLG00020001878	srp54	100	99.405	Oryzias_latipes_hni
ENSFHEG00000004263	srp54	100	99.405	ENSORLG00015021866	srp54	100	99.405	Oryzias_latipes_hsok
ENSFHEG00000004263	srp54	100	99.206	ENSOMEG00000020952	srp54	100	99.206	Oryzias_melastigma
ENSFHEG00000004263	srp54	100	95.437	ENSOGAG00000012188	SRP54	100	95.437	Otolemur_garnettii
ENSFHEG00000004263	srp54	100	95.437	ENSOARG00000007160	SRP54	100	95.437	Ovis_aries
ENSFHEG00000004263	srp54	100	95.437	ENSPPAG00000017434	SRP54	100	95.437	Pan_paniscus
ENSFHEG00000004263	srp54	100	94.444	ENSPPRG00000014047	SRP54	100	94.444	Panthera_pardus
ENSFHEG00000004263	srp54	100	95.238	ENSPTIG00000000744	SRP54	96	95.238	Panthera_tigris_altaica
ENSFHEG00000004263	srp54	100	95.437	ENSPTRG00000006259	FAM177A1	100	95.437	Pan_troglodytes
ENSFHEG00000004263	srp54	100	95.437	ENSPANG00000023853	SRP54	100	95.437	Papio_anubis
ENSFHEG00000004263	srp54	100	97.817	ENSPKIG00000001953	srp54	100	97.817	Paramormyrops_kingsleyae
ENSFHEG00000004263	srp54	100	95.238	ENSPSIG00000006476	SRP54	100	95.238	Pelodiscus_sinensis
ENSFHEG00000004263	srp54	97	92.461	ENSPMGG00000004127	srp54	99	96.087	Periophthalmus_magnuspinnatus
ENSFHEG00000004263	srp54	100	83.532	ENSPEMG00000019634	-	100	83.532	Peromyscus_maniculatus_bairdii
ENSFHEG00000004263	srp54	100	89.881	ENSPMAG00000006078	-	100	89.881	Petromyzon_marinus
ENSFHEG00000004263	srp54	100	95.437	ENSPCIG00000016175	SRP54	100	95.437	Phascolarctos_cinereus
ENSFHEG00000004263	srp54	100	99.405	ENSPFOG00000008870	srp54	100	99.405	Poecilia_formosa
ENSFHEG00000004263	srp54	100	99.405	ENSPLAG00000009889	srp54	100	99.405	Poecilia_latipinna
ENSFHEG00000004263	srp54	100	99.405	ENSPMEG00000008601	srp54	100	99.405	Poecilia_mexicana
ENSFHEG00000004263	srp54	100	99.405	ENSPREG00000004505	srp54	100	99.405	Poecilia_reticulata
ENSFHEG00000004263	srp54	100	90.675	ENSPPYG00000005739	SRP54	100	90.675	Pongo_abelii
ENSFHEG00000004263	srp54	100	91.865	ENSPCAG00000006268	SRP54	100	91.865	Procavia_capensis
ENSFHEG00000004263	srp54	100	93.465	ENSPCOG00000022473	SRP54	100	93.465	Propithecus_coquereli
ENSFHEG00000004263	srp54	68	96.809	ENSPVAG00000010056	SRP54	82	96.809	Pteropus_vampyrus
ENSFHEG00000004263	srp54	100	99.206	ENSPNYG00000009717	srp54	100	99.206	Pundamilia_nyererei
ENSFHEG00000004263	srp54	100	97.817	ENSPNAG00000008544	srp54	100	97.817	Pygocentrus_nattereri
ENSFHEG00000004263	srp54	100	95.437	ENSRNOG00000032776	Srp54a	100	95.437	Rattus_norvegicus
ENSFHEG00000004263	srp54	100	95.437	ENSRROG00000041292	SRP54	100	95.437	Rhinopithecus_roxellana
ENSFHEG00000004263	srp54	94	46.239	YPR088C	SRP54	95	47.126	Saccharomyces_cerevisiae
ENSFHEG00000004263	srp54	94	95.148	ENSSBOG00000035145	SRP54	100	95.148	Saimiri_boliviensis_boliviensis
ENSFHEG00000004263	srp54	68	94.461	ENSSHAG00000000671	SRP54	100	94.461	Sarcophilus_harrisii
ENSFHEG00000004263	srp54	100	98.214	ENSSFOG00015013920	srp54	100	98.214	Scleropages_formosus
ENSFHEG00000004263	srp54	100	93.446	ENSSMAG00000002441	srp54	100	93.446	Scophthalmus_maximus
ENSFHEG00000004263	srp54	100	99.008	ENSSDUG00000018586	srp54	100	99.008	Seriola_dumerili
ENSFHEG00000004263	srp54	100	99.206	ENSSLDG00000010476	srp54	100	99.206	Seriola_lalandi_dorsalis
ENSFHEG00000004263	srp54	100	95.437	ENSSARG00000002744	SRP54	100	95.437	Sorex_araneus
ENSFHEG00000004263	srp54	100	95.437	ENSSPUG00000013101	SRP54	100	95.437	Sphenodon_punctatus
ENSFHEG00000004263	srp54	100	99.603	ENSSPAG00000002354	srp54	100	99.603	Stegastes_partitus
ENSFHEG00000004263	srp54	100	95.437	ENSSSCG00000001955	SRP54	100	95.437	Sus_scrofa
ENSFHEG00000004263	srp54	94	94.726	ENSTGUG00000011945	-	95	94.726	Taeniopygia_guttata
ENSFHEG00000004263	srp54	100	98.810	ENSTRUG00000007057	srp54	100	98.810	Takifugu_rubripes
ENSFHEG00000004263	srp54	100	98.016	ENSTNIG00000002589	srp54	100	98.016	Tetraodon_nigroviridis
ENSFHEG00000004263	srp54	89	86.577	ENSTBEG00000011409	SRP54	100	86.577	Tupaia_belangeri
ENSFHEG00000004263	srp54	100	86.310	ENSTTRG00000000928	SRP54	100	86.310	Tursiops_truncatus
ENSFHEG00000004263	srp54	52	96.183	ENSUAMG00000012385	SRP54	100	96.183	Ursus_americanus
ENSFHEG00000004263	srp54	100	95.437	ENSUMAG00000011234	SRP54	100	95.437	Ursus_maritimus
ENSFHEG00000004263	srp54	94	94.937	ENSVPAG00000005668	SRP54	100	94.937	Vicugna_pacos
ENSFHEG00000004263	srp54	100	95.437	ENSVVUG00000019962	SRP54	100	95.437	Vulpes_vulpes
ENSFHEG00000004263	srp54	100	80.868	ENSXETG00000012290	srp54	100	80.868	Xenopus_tropicalis
ENSFHEG00000004263	srp54	99	92.026	ENSXCOG00000004658	srp54	96	99.549	Xiphophorus_couchianus
ENSFHEG00000004263	srp54	100	99.405	ENSXMAG00000018315	srp54	100	99.405	Xiphophorus_maculatus