EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000006160 (Gene tree)
Gene ID: 105926045
Gene Symbol: -
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA-binding protein 38
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 20558 bases
Position: chrKN811292.1:522373-542930
Accession: 105926045
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000024521	RRM_1	PF00076.22	9.1e-17	1	1
ENSFHEP00000024515	RRM_1	PF00076.22	1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000007571	-	3078	XM_012862210	ENSFHEP00000024515	248 (aa)	XP_012717664	UPI0006449BA3
ENSFHET00000007587	-	675	-	ENSFHEP00000024521	224 (aa)	-	-

Gene Model

Click here to download ENSFHEG00000006160's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000006160's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000006160	-	79	64.467	ENSFHEG00000013449	rbm24a	98	61.472
ENSFHEG00000006160	-	66	47.742	ENSFHEG00000015627	rbm24b	98	47.034
ENSFHEG00000006160	-	83	36.471	ENSFHEG00000003560	-	78	36.471
ENSFHEG00000006160	-	100	61.024	ENSFHEG00000017748	rbm38	98	61.355

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000006160	-	92	71.759	ENSG00000132819	RBM38	91	90.179	Homo_sapiens
ENSFHEG00000006160	-	100	89.286	ENSAPOG00000009939	-	100	89.286	Acanthochromis_polyacanthus
ENSFHEG00000006160	-	100	62.353	ENSAPOG00000003301	rbm38	98	61.600	Acanthochromis_polyacanthus
ENSFHEG00000006160	-	100	84.848	ENSACIG00000012502	-	100	90.400	Amphilophus_citrinellus
ENSFHEG00000006160	-	100	62.500	ENSACIG00000000010	rbm38	98	62.500	Amphilophus_citrinellus
ENSFHEG00000006160	-	100	62.353	ENSAOCG00000013497	-	98	61.600	Amphiprion_ocellaris
ENSFHEG00000006160	-	96	89.252	ENSAOCG00000012559	RBM38	100	84.647	Amphiprion_ocellaris
ENSFHEG00000006160	-	100	85.484	ENSAPEG00000023581	-	100	84.274	Amphiprion_percula
ENSFHEG00000006160	-	96	69.124	ENSAPEG00000013137	rbm38	91	69.124	Amphiprion_percula
ENSFHEG00000006160	-	100	60.887	ENSATEG00000016366	rbm38	97	63.596	Anabas_testudineus
ENSFHEG00000006160	-	100	84.677	ENSATEG00000016710	-	100	83.871	Anabas_testudineus
ENSFHEG00000006160	-	92	70.642	ENSACAG00000016238	RBM38	89	70.642	Anolis_carolinensis
ENSFHEG00000006160	-	92	71.759	ENSANAG00000031959	RBM38	78	95.745	Aotus_nancymaae
ENSFHEG00000006160	-	100	84.677	ENSACLG00000019514	-	100	83.197	Astatotilapia_calliptera
ENSFHEG00000006160	-	100	77.824	ENSAMXG00000015601	-	100	76.987	Astyanax_mexicanus
ENSFHEG00000006160	-	96	64.348	ENSAMXG00000038120	rbm38	97	64.348	Astyanax_mexicanus
ENSFHEG00000006160	-	92	71.163	ENSBTAG00000008105	RBM38	89	71.163	Bos_taurus
ENSFHEG00000006160	-	92	72.685	ENSCJAG00000019139	RBM38	78	95.745	Callithrix_jacchus
ENSFHEG00000006160	-	92	73.023	ENSCAFG00020021943	RBM38	89	73.023	Canis_lupus_dingo
ENSFHEG00000006160	-	99	67.965	ENSCHIG00000002609	RBM38	92	67.965	Capra_hircus
ENSFHEG00000006160	-	92	71.296	ENSCPOG00000012781	RBM38	89	71.296	Cavia_porcellus
ENSFHEG00000006160	-	92	72.685	ENSCCAG00000036872	RBM38	78	95.745	Cebus_capucinus
ENSFHEG00000006160	-	92	72.430	ENSCATG00000032133	RBM38	78	95.745	Cercocebus_atys
ENSFHEG00000006160	-	92	70.833	ENSCLAG00000005906	RBM38	92	70.833	Chinchilla_lanigera
ENSFHEG00000006160	-	92	72.430	ENSCSAG00000015503	RBM38	89	72.430	Chlorocebus_sabaeus
ENSFHEG00000006160	-	92	71.759	ENSCPBG00000024059	RBM38	99	71.759	Chrysemys_picta_bellii
ENSFHEG00000006160	-	68	62.733	ENSCING00000025102	-	83	55.392	Ciona_intestinalis
ENSFHEG00000006160	-	67	63.694	ENSCSAVG00000001132	-	76	56.585	Ciona_savignyi
ENSFHEG00000006160	-	92	55.450	ENSCANG00000030105	-	78	55.450	Colobus_angolensis_palliatus
ENSFHEG00000006160	-	92	69.907	ENSCGRG00001012928	Rbm38	89	71.296	Cricetulus_griseus_chok1gshd
ENSFHEG00000006160	-	100	81.452	ENSCSEG00000004701	-	100	81.048	Cynoglossus_semilaevis
ENSFHEG00000006160	-	89	57.921	ENSCSEG00000020943	rbm38	67	59.606	Cynoglossus_semilaevis
ENSFHEG00000006160	-	100	90.726	ENSCVAG00000005472	-	100	89.516	Cyprinodon_variegatus
ENSFHEG00000006160	-	99	61.446	ENSCVAG00000015952	rbm38	98	61.446	Cyprinodon_variegatus
ENSFHEG00000006160	-	92	79.126	ENSDARG00000058818	rbm38	85	79.126	Danio_rerio
ENSFHEG00000006160	-	92	72.857	ENSDNOG00000032004	RBM38	98	72.857	Dasypus_novemcinctus
ENSFHEG00000006160	-	92	71.163	ENSECAG00000007700	RBM38	89	71.163	Equus_caballus
ENSFHEG00000006160	-	92	70.507	ENSEEUG00000013489	RBM38	89	71.429	Erinaceus_europaeus
ENSFHEG00000006160	-	86	69.192	ENSELUG00000000585	-	86	69.192	Esox_lucius
ENSFHEG00000006160	-	100	79.447	ENSELUG00000005849	-	100	79.447	Esox_lucius
ENSFHEG00000006160	-	92	71.163	ENSFCAG00000042916	RBM38	78	94.681	Felis_catus
ENSFHEG00000006160	-	75	75.000	ENSFALG00000010805	RBM38	88	75.000	Ficedula_albicollis
ENSFHEG00000006160	-	79	87.151	ENSGMOG00000016655	-	96	87.151	Gadus_morhua
ENSFHEG00000006160	-	92	71.759	ENSGALG00000026081	RBM38	99	73.148	Gallus_gallus
ENSFHEG00000006160	-	94	82.949	ENSGACG00000009873	-	100	82.949	Gasterosteus_aculeatus
ENSFHEG00000006160	-	94	68.396	ENSGACG00000015224	rbm38	100	68.396	Gasterosteus_aculeatus
ENSFHEG00000006160	-	92	71.759	ENSGAGG00000001187	RBM38	99	71.759	Gopherus_agassizii
ENSFHEG00000006160	-	100	86.580	ENSHBUG00000011778	-	100	86.580	Haplochromis_burtoni
ENSFHEG00000006160	-	100	61.328	ENSHBUG00000012058	rbm38	98	61.328	Haplochromis_burtoni
ENSFHEG00000006160	-	92	68.837	ENSHGLG00000015077	RBM38	89	71.759	Heterocephalus_glaber_female
ENSFHEG00000006160	-	92	86.408	ENSHCOG00000005622	-	59	86.408	Hippocampus_comes
ENSFHEG00000006160	-	96	52.838	ENSHCOG00000019040	rbm38	92	52.838	Hippocampus_comes
ENSFHEG00000006160	-	100	69.959	ENSIPUG00000019349	-	100	69.959	Ictalurus_punctatus
ENSFHEG00000006160	-	92	57.806	ENSKMAG00000012402	rbm38	98	57.456	Kryptolebias_marmoratus
ENSFHEG00000006160	-	100	84.416	ENSLBEG00000016163	RBM38	100	84.416	Labrus_bergylta
ENSFHEG00000006160	-	100	61.328	ENSLBEG00000018878	rbm38	98	61.753	Labrus_bergylta
ENSFHEG00000006160	-	100	74.043	ENSLOCG00000003456	rbm38	100	74.043	Lepisosteus_oculatus
ENSFHEG00000006160	-	92	72.430	ENSMFAG00000043808	RBM38	78	95.745	Macaca_fascicularis
ENSFHEG00000006160	-	92	72.430	ENSMMUG00000031391	RBM38	78	95.745	Macaca_mulatta
ENSFHEG00000006160	-	92	72.430	ENSMNEG00000034683	RBM38	78	95.745	Macaca_nemestrina
ENSFHEG00000006160	-	100	63.672	ENSMAMG00000024135	rbm38	98	62.550	Mastacembelus_armatus
ENSFHEG00000006160	-	100	83.065	ENSMAMG00000020499	RBM38	100	82.258	Mastacembelus_armatus
ENSFHEG00000006160	-	100	86.580	ENSMZEG00005000849	-	100	86.580	Maylandia_zebra
ENSFHEG00000006160	-	100	61.328	ENSMZEG00005026036	rbm38	98	61.328	Maylandia_zebra
ENSFHEG00000006160	-	92	71.759	ENSMAUG00000021211	Rbm38	89	73.148	Mesocricetus_auratus
ENSFHEG00000006160	-	92	73.148	ENSMICG00000038011	RBM38	98	73.148	Microcebus_murinus
ENSFHEG00000006160	-	92	71.296	ENSMOCG00000008715	Rbm38	89	72.685	Microtus_ochrogaster
ENSFHEG00000006160	-	96	89.252	ENSMMOG00000020051	-	94	89.252	Mola_mola
ENSFHEG00000006160	-	92	68.981	ENSMODG00000016458	RBM38	91	69.907	Monodelphis_domestica
ENSFHEG00000006160	-	84	90.476	ENSMALG00000004680	RBM38	77	86.070	Monopterus_albus
ENSFHEG00000006160	-	75	72.353	ENSMALG00000022327	rbm38	98	60.256	Monopterus_albus
ENSFHEG00000006160	-	92	68.837	MGP_CAROLIEiJ_G0024745	Rbm38	89	71.759	Mus_caroli
ENSFHEG00000006160	-	92	68.837	ENSMUSG00000027510	Rbm38	89	71.759	Mus_musculus
ENSFHEG00000006160	-	92	68.837	MGP_PahariEiJ_G0026186	Rbm38	89	71.759	Mus_pahari
ENSFHEG00000006160	-	92	68.837	MGP_SPRETEiJ_G0025665	Rbm38	89	71.759	Mus_spretus
ENSFHEG00000006160	-	79	77.473	ENSMPUG00000006518	RBM38	93	75.263	Mustela_putorius_furo
ENSFHEG00000006160	-	92	70.233	ENSMLUG00000011140	RBM38	98	70.233	Myotis_lucifugus
ENSFHEG00000006160	-	100	84.677	ENSNBRG00000022545	-	100	83.197	Neolamprologus_brichardi
ENSFHEG00000006160	-	100	61.719	ENSNBRG00000022685	rbm38	98	61.719	Neolamprologus_brichardi
ENSFHEG00000006160	-	50	79.464	ENSMEUG00000005475	-	84	79.464	Notamacropus_eugenii
ENSFHEG00000006160	-	92	70.833	ENSODEG00000007980	RBM38	89	70.833	Octodon_degus
ENSFHEG00000006160	-	99	84.615	ENSONIG00000020324	-	100	83.128	Oreochromis_niloticus
ENSFHEG00000006160	-	99	61.569	ENSONIG00000017073	rbm38	100	61.569	Oreochromis_niloticus
ENSFHEG00000006160	-	92	70.755	ENSOANG00000009259	RBM38	81	71.090	Ornithorhynchus_anatinus
ENSFHEG00000006160	-	96	60.081	ENSORLG00000012154	rbm38	98	59.524	Oryzias_latipes
ENSFHEG00000006160	-	100	83.065	ENSORLG00000027180	-	100	82.258	Oryzias_latipes
ENSFHEG00000006160	-	99	58.824	ENSORLG00020017871	rbm38	98	59.127	Oryzias_latipes_hni
ENSFHEG00000006160	-	100	83.065	ENSORLG00020020751	-	100	82.258	Oryzias_latipes_hni
ENSFHEG00000006160	-	100	82.258	ENSORLG00015017040	-	100	81.452	Oryzias_latipes_hsok
ENSFHEG00000006160	-	100	59.302	ENSORLG00015012606	rbm38	98	57.143	Oryzias_latipes_hsok
ENSFHEG00000006160	-	100	82.258	ENSOMEG00000023912	-	100	81.855	Oryzias_melastigma
ENSFHEG00000006160	-	99	59.766	ENSOMEG00000006805	rbm38	84	63.850	Oryzias_melastigma
ENSFHEG00000006160	-	92	72.222	ENSOGAG00000029136	RBM38	88	72.222	Otolemur_garnettii
ENSFHEG00000006160	-	92	71.163	ENSPPRG00000009507	RBM38	78	94.681	Panthera_pardus
ENSFHEG00000006160	-	79	76.374	ENSPTRG00000013661	RBM38	78	95.745	Pan_troglodytes
ENSFHEG00000006160	-	63	79.286	ENSPTRG00000045845	-	75	79.286	Pan_troglodytes
ENSFHEG00000006160	-	92	58.605	ENSPANG00000033127	-	91	58.216	Papio_anubis
ENSFHEG00000006160	-	92	72.430	ENSPANG00000020919	-	78	95.745	Papio_anubis
ENSFHEG00000006160	-	100	69.672	ENSPKIG00000025417	rbm38	100	70.492	Paramormyrops_kingsleyae
ENSFHEG00000006160	-	100	74.459	ENSPKIG00000018122	-	95	90.090	Paramormyrops_kingsleyae
ENSFHEG00000006160	-	92	71.296	ENSPSIG00000011649	RBM38	91	71.296	Pelodiscus_sinensis
ENSFHEG00000006160	-	99	60.159	ENSPMGG00000011343	rbm38	98	61.355	Periophthalmus_magnuspinnatus
ENSFHEG00000006160	-	100	77.291	ENSPMGG00000017094	-	100	76.494	Periophthalmus_magnuspinnatus
ENSFHEG00000006160	-	100	66.807	ENSPCIG00000013648	RBM38	100	66.807	Phascolarctos_cinereus
ENSFHEG00000006160	-	100	59.449	ENSPFOG00000011658	rbm38	98	60.000	Poecilia_formosa
ENSFHEG00000006160	-	100	91.968	ENSPLAG00000002500	-	100	89.157	Poecilia_latipinna
ENSFHEG00000006160	-	100	59.608	ENSPLAG00000005218	rbm38	98	59.608	Poecilia_latipinna
ENSFHEG00000006160	-	100	59.449	ENSPMEG00000015770	rbm38	98	60.000	Poecilia_mexicana
ENSFHEG00000006160	-	100	59.449	ENSPREG00000007398	rbm38	98	60.000	Poecilia_reticulata
ENSFHEG00000006160	-	92	71.759	ENSPCOG00000026201	RBM38	77	95.745	Propithecus_coquereli
ENSFHEG00000006160	-	67	96.154	ENSPVAG00000006457	RBM38	62	96.154	Pteropus_vampyrus
ENSFHEG00000006160	-	100	84.677	ENSPNYG00000019727	-	100	91.200	Pundamilia_nyererei
ENSFHEG00000006160	-	100	60.938	ENSPNYG00000021373	rbm38	98	60.938	Pundamilia_nyererei
ENSFHEG00000006160	-	100	75.314	ENSPNAG00000015123	-	97	82.707	Pygocentrus_nattereri
ENSFHEG00000006160	-	94	72.857	ENSPNAG00000010596	rbm38	88	72.857	Pygocentrus_nattereri
ENSFHEG00000006160	-	92	71.759	ENSRNOG00000006420	Rbm38	89	71.759	Rattus_norvegicus
ENSFHEG00000006160	-	92	58.962	ENSRROG00000036388	-	88	58.962	Rhinopithecus_roxellana
ENSFHEG00000006160	-	92	72.685	ENSSBOG00000031053	RBM38	88	95.745	Saimiri_boliviensis_boliviensis
ENSFHEG00000006160	-	100	70.042	ENSSFOG00015004453	rbm38	100	72.574	Scleropages_formosus
ENSFHEG00000006160	-	100	64.113	ENSSDUG00000022611	rbm38	98	64.683	Seriola_dumerili
ENSFHEG00000006160	-	100	85.887	ENSSDUG00000021082	RBM38	100	85.081	Seriola_dumerili
ENSFHEG00000006160	-	100	85.887	ENSSLDG00000011778	RBM38	100	85.081	Seriola_lalandi_dorsalis
ENSFHEG00000006160	-	100	64.113	ENSSLDG00000010845	rbm38	98	64.683	Seriola_lalandi_dorsalis
ENSFHEG00000006160	-	100	61.719	ENSSPAG00000011113	rbm38	98	62.550	Stegastes_partitus
ENSFHEG00000006160	-	100	86.607	ENSSPAG00000020989	RBM38	100	88.393	Stegastes_partitus
ENSFHEG00000006160	-	92	71.163	ENSSSCG00000007504	RBM38	89	71.163	Sus_scrofa
ENSFHEG00000006160	-	96	62.705	ENSTRUG00000024954	rbm38	94	62.705	Takifugu_rubripes
ENSFHEG00000006160	-	100	84.274	ENSTRUG00000019869	-	100	84.274	Takifugu_rubripes
ENSFHEG00000006160	-	94	85.520	ENSTNIG00000007093	-	100	85.520	Tetraodon_nigroviridis
ENSFHEG00000006160	-	92	70.833	ENSUAMG00000019780	RBM38	89	72.222	Ursus_americanus
ENSFHEG00000006160	-	92	73.023	ENSVVUG00000017246	RBM38	89	73.023	Vulpes_vulpes
ENSFHEG00000006160	-	92	65.455	ENSXETG00000011268	rbm38	97	68.182	Xenopus_tropicalis
ENSFHEG00000006160	-	94	70.776	ENSXCOG00000017324	-	94	70.776	Xiphophorus_couchianus
ENSFHEG00000006160	-	100	60.558	ENSXMAG00000023662	rbm38	98	60.558	Xiphophorus_maculatus