EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000006349 (Gene tree)
Gene ID: 105936802
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 3428 bases
Position: chrKN811493.1:1020418-1023845
Accession: 105936802
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000024644	LSM	PF01423.22	3.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000007260	-	1358	XM_012877779	ENSFHEP00000024644	112 (aa)	XP_012733233	UPI000644FC91

Gene Model

Click here to download ENSFHEG00000006349's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000006349's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000006349	lsm7	63	38.028	ENSFHEG00000012063	snrpg	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000006349	lsm7	90	96.040	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSFHEG00000006349	lsm7	84	98.936	ENSAPOG00000015573	lsm7	81	98.936	Acanthochromis_polyacanthus
ENSFHEG00000006349	lsm7	90	95.050	ENSAMEG00000005484	LSM7	89	94.565	Ailuropoda_melanoleuca
ENSFHEG00000006349	lsm7	87	97.938	ENSACIG00000006498	lsm7	77	97.938	Amphilophus_citrinellus
ENSFHEG00000006349	lsm7	91	98.039	ENSAOCG00000001077	lsm7	93	98.039	Amphiprion_ocellaris
ENSFHEG00000006349	lsm7	93	96.154	ENSAPEG00000024447	lsm7	93	98.039	Amphiprion_percula
ENSFHEG00000006349	lsm7	90	99.010	ENSAPEG00000000694	lsm7	98	99.010	Amphiprion_percula
ENSFHEG00000006349	lsm7	90	99.010	ENSATEG00000008557	lsm7	98	99.010	Anabas_testudineus
ENSFHEG00000006349	lsm7	90	96.040	ENSANAG00000037196	-	98	96.040	Aotus_nancymaae
ENSFHEG00000006349	lsm7	90	87.129	ENSANAG00000022222	-	89	85.870	Aotus_nancymaae
ENSFHEG00000006349	lsm7	90	98.020	ENSACLG00000021021	lsm7	98	98.020	Astatotilapia_calliptera
ENSFHEG00000006349	lsm7	90	97.030	ENSAMXG00000037622	lsm7	98	97.030	Astyanax_mexicanus
ENSFHEG00000006349	lsm7	90	96.040	ENSBTAG00000004521	LSM7	98	96.040	Bos_taurus
ENSFHEG00000006349	lsm7	91	57.843	WBGene00003081	lsm-7	88	57.143	Caenorhabditis_elegans
ENSFHEG00000006349	lsm7	62	78.261	ENSCJAG00000039713	-	84	78.261	Callithrix_jacchus
ENSFHEG00000006349	lsm7	90	95.050	ENSCAFG00000019409	LSM7	89	94.565	Canis_familiaris
ENSFHEG00000006349	lsm7	90	95.050	ENSCAFG00020018168	LSM7	67	95.604	Canis_lupus_dingo
ENSFHEG00000006349	lsm7	90	96.040	ENSCHIG00000023663	LSM7	98	96.040	Capra_hircus
ENSFHEG00000006349	lsm7	63	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSFHEG00000006349	lsm7	90	96.040	ENSCPOG00000014025	LSM7	100	96.040	Cavia_porcellus
ENSFHEG00000006349	lsm7	90	96.040	ENSCCAG00000035456	LSM7	99	96.040	Cebus_capucinus
ENSFHEG00000006349	lsm7	90	96.040	ENSCATG00000023543	LSM7	98	96.040	Cercocebus_atys
ENSFHEG00000006349	lsm7	90	96.040	ENSCLAG00000011635	LSM7	98	96.040	Chinchilla_lanigera
ENSFHEG00000006349	lsm7	90	96.040	ENSCSAG00000011599	LSM7	98	96.040	Chlorocebus_sabaeus
ENSFHEG00000006349	lsm7	64	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSFHEG00000006349	lsm7	86	79.167	ENSCING00000022134	-	90	79.775	Ciona_intestinalis
ENSFHEG00000006349	lsm7	90	96.040	ENSCANG00000035525	LSM7	98	96.040	Colobus_angolensis_palliatus
ENSFHEG00000006349	lsm7	90	95.050	ENSCGRG00001000807	-	89	94.565	Cricetulus_griseus_chok1gshd
ENSFHEG00000006349	lsm7	80	85.556	ENSCGRG00001016005	-	82	83.951	Cricetulus_griseus_chok1gshd
ENSFHEG00000006349	lsm7	80	85.556	ENSCGRG00000006821	-	82	83.951	Cricetulus_griseus_crigri
ENSFHEG00000006349	lsm7	92	93.204	ENSCGRG00000014355	-	88	94.565	Cricetulus_griseus_crigri
ENSFHEG00000006349	lsm7	95	95.283	ENSCSEG00000014900	lsm7	90	95.283	Cynoglossus_semilaevis
ENSFHEG00000006349	lsm7	96	99.074	ENSCVAG00000021091	lsm7	100	99.074	Cyprinodon_variegatus
ENSFHEG00000006349	lsm7	90	97.030	ENSDARG00000058328	lsm7	98	97.030	Danio_rerio
ENSFHEG00000006349	lsm7	90	94.059	ENSDORG00000024460	Lsm7	90	93.478	Dipodomys_ordii
ENSFHEG00000006349	lsm7	91	71.845	FBgn0261068	LSm7	82	73.333	Drosophila_melanogaster
ENSFHEG00000006349	lsm7	90	93.069	ENSETEG00000012788	LSM7	90	92.391	Echinops_telfairi
ENSFHEG00000006349	lsm7	74	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSFHEG00000006349	lsm7	90	85.149	ENSEBUG00000016992	lsm7	88	86.957	Eptatretus_burgeri
ENSFHEG00000006349	lsm7	94	89.524	ENSECAG00000001440	LSM7	72	84.821	Equus_caballus
ENSFHEG00000006349	lsm7	90	95.050	ENSFCAG00000003445	LSM7	89	94.565	Felis_catus
ENSFHEG00000006349	lsm7	90	98.020	ENSFALG00000011912	LSM7	100	98.020	Ficedula_albicollis
ENSFHEG00000006349	lsm7	86	95.833	ENSFDAG00000007661	LSM7	100	95.833	Fukomys_damarensis
ENSFHEG00000006349	lsm7	90	97.030	ENSGMOG00000013320	lsm7	98	97.030	Gadus_morhua
ENSFHEG00000006349	lsm7	90	100.000	ENSGAFG00000013902	lsm7	98	100.000	Gambusia_affinis
ENSFHEG00000006349	lsm7	90	98.020	ENSGACG00000010390	lsm7	98	98.020	Gasterosteus_aculeatus
ENSFHEG00000006349	lsm7	90	96.040	ENSGGOG00000010172	LSM7	98	96.040	Gorilla_gorilla
ENSFHEG00000006349	lsm7	92	96.117	ENSHBUG00000004616	lsm7	98	98.020	Haplochromis_burtoni
ENSFHEG00000006349	lsm7	90	96.040	ENSHGLG00000010587	LSM7	98	96.040	Heterocephalus_glaber_female
ENSFHEG00000006349	lsm7	90	96.040	ENSHGLG00100000852	LSM7	98	96.040	Heterocephalus_glaber_male
ENSFHEG00000006349	lsm7	90	98.020	ENSHCOG00000020252	lsm7	100	98.020	Hippocampus_comes
ENSFHEG00000006349	lsm7	90	97.030	ENSIPUG00000024724	lsm7	98	97.030	Ictalurus_punctatus
ENSFHEG00000006349	lsm7	90	96.040	ENSSTOG00000028372	LSM7	99	96.040	Ictidomys_tridecemlineatus
ENSFHEG00000006349	lsm7	89	96.000	ENSJJAG00000001936	Lsm7	88	95.604	Jaculus_jaculus
ENSFHEG00000006349	lsm7	90	100.000	ENSKMAG00000022151	lsm7	98	100.000	Kryptolebias_marmoratus
ENSFHEG00000006349	lsm7	90	99.010	ENSLBEG00000005203	lsm7	98	99.010	Labrus_bergylta
ENSFHEG00000006349	lsm7	90	97.030	ENSLACG00000015700	LSM7	98	97.030	Latimeria_chalumnae
ENSFHEG00000006349	lsm7	90	98.020	ENSLOCG00000004356	lsm7	98	98.020	Lepisosteus_oculatus
ENSFHEG00000006349	lsm7	92	95.146	ENSLAFG00000029302	LSM7	100	95.146	Loxodonta_africana
ENSFHEG00000006349	lsm7	90	96.040	ENSMFAG00000044572	LSM7	98	96.040	Macaca_fascicularis
ENSFHEG00000006349	lsm7	90	96.040	ENSMMUG00000000452	LSM7	99	96.040	Macaca_mulatta
ENSFHEG00000006349	lsm7	90	96.040	ENSMNEG00000004393	LSM7	98	96.040	Macaca_nemestrina
ENSFHEG00000006349	lsm7	90	96.040	ENSMLEG00000030852	LSM7	100	96.040	Mandrillus_leucophaeus
ENSFHEG00000006349	lsm7	90	98.020	ENSMAMG00000005410	lsm7	98	98.020	Mastacembelus_armatus
ENSFHEG00000006349	lsm7	90	98.020	ENSMZEG00005028055	lsm7	98	98.020	Maylandia_zebra
ENSFHEG00000006349	lsm7	90	98.020	ENSMGAG00000000750	LSM7	79	97.826	Meleagris_gallopavo
ENSFHEG00000006349	lsm7	90	95.050	ENSMAUG00000009276	Lsm7	89	94.565	Mesocricetus_auratus
ENSFHEG00000006349	lsm7	90	96.040	ENSMICG00000009988	-	98	96.040	Microcebus_murinus
ENSFHEG00000006349	lsm7	90	96.040	ENSMICG00000028619	-	98	96.040	Microcebus_murinus
ENSFHEG00000006349	lsm7	90	95.050	ENSMOCG00000016925	Lsm7	89	94.565	Microtus_ochrogaster
ENSFHEG00000006349	lsm7	90	99.010	ENSMMOG00000019645	lsm7	96	99.010	Mola_mola
ENSFHEG00000006349	lsm7	90	97.030	ENSMODG00000004722	LSM7	98	97.030	Monodelphis_domestica
ENSFHEG00000006349	lsm7	90	98.020	ENSMALG00000014511	lsm7	78	98.020	Monopterus_albus
ENSFHEG00000006349	lsm7	89	95.000	MGP_CAROLIEiJ_G0015607	Lsm7	88	94.505	Mus_caroli
ENSFHEG00000006349	lsm7	89	95.000	ENSMUSG00000035215	Lsm7	88	94.505	Mus_musculus
ENSFHEG00000006349	lsm7	89	95.000	MGP_PahariEiJ_G0031020	Lsm7	88	94.505	Mus_pahari
ENSFHEG00000006349	lsm7	89	95.000	MGP_SPRETEiJ_G0016425	Lsm7	88	94.505	Mus_spretus
ENSFHEG00000006349	lsm7	90	95.050	ENSMLUG00000013097	-	89	94.565	Myotis_lucifugus
ENSFHEG00000006349	lsm7	95	85.849	ENSMLUG00000024002	-	84	90.110	Myotis_lucifugus
ENSFHEG00000006349	lsm7	90	94.059	ENSNGAG00000021637	Lsm7	89	93.478	Nannospalax_galili
ENSFHEG00000006349	lsm7	90	98.020	ENSNBRG00000001237	-	81	98.020	Neolamprologus_brichardi
ENSFHEG00000006349	lsm7	92	96.117	ENSNBRG00000015770	lsm7	89	96.117	Neolamprologus_brichardi
ENSFHEG00000006349	lsm7	90	96.040	ENSNLEG00000002265	LSM7	98	96.040	Nomascus_leucogenys
ENSFHEG00000006349	lsm7	90	75.248	ENSODEG00000008190	-	88	73.913	Octodon_degus
ENSFHEG00000006349	lsm7	90	96.040	ENSODEG00000013590	-	98	96.040	Octodon_degus
ENSFHEG00000006349	lsm7	90	89.109	ENSODEG00000018769	-	89	88.043	Octodon_degus
ENSFHEG00000006349	lsm7	90	98.020	ENSONIG00000001801	lsm7	87	98.020	Oreochromis_niloticus
ENSFHEG00000006349	lsm7	90	99.010	ENSORLG00000023951	lsm7	98	99.010	Oryzias_latipes
ENSFHEG00000006349	lsm7	90	99.010	ENSORLG00020022226	lsm7	98	99.010	Oryzias_latipes_hni
ENSFHEG00000006349	lsm7	92	98.058	ENSORLG00015020044	lsm7	95	98.058	Oryzias_latipes_hsok
ENSFHEG00000006349	lsm7	92	98.058	ENSOMEG00000012806	lsm7	98	99.010	Oryzias_melastigma
ENSFHEG00000006349	lsm7	90	94.059	ENSOGAG00000000144	-	90	93.478	Otolemur_garnettii
ENSFHEG00000006349	lsm7	90	84.158	ENSOGAG00000024373	-	90	83.696	Otolemur_garnettii
ENSFHEG00000006349	lsm7	90	96.040	ENSOARG00000014013	LSM7	98	96.040	Ovis_aries
ENSFHEG00000006349	lsm7	90	96.040	ENSPPAG00000026500	LSM7	98	96.040	Pan_paniscus
ENSFHEG00000006349	lsm7	90	95.050	ENSPPRG00000008624	LSM7	89	94.565	Panthera_pardus
ENSFHEG00000006349	lsm7	90	95.050	ENSPTIG00000016252	LSM7	89	94.565	Panthera_tigris_altaica
ENSFHEG00000006349	lsm7	90	96.040	ENSPTRG00000010233	LSM7	98	96.040	Pan_troglodytes
ENSFHEG00000006349	lsm7	90	96.040	ENSPANG00000020668	LSM7	98	96.040	Papio_anubis
ENSFHEG00000006349	lsm7	92	98.058	ENSPKIG00000011325	lsm7	98	99.010	Paramormyrops_kingsleyae
ENSFHEG00000006349	lsm7	90	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSFHEG00000006349	lsm7	90	99.010	ENSPMGG00000006498	lsm7	98	99.010	Periophthalmus_magnuspinnatus
ENSFHEG00000006349	lsm7	90	97.030	ENSPCIG00000030454	LSM7	99	97.030	Phascolarctos_cinereus
ENSFHEG00000006349	lsm7	96	94.393	ENSPFOG00000012467	lsm7	95	94.393	Poecilia_formosa
ENSFHEG00000006349	lsm7	96	97.222	ENSPLAG00000000252	lsm7	100	97.222	Poecilia_latipinna
ENSFHEG00000006349	lsm7	96	97.222	ENSPMEG00000000587	lsm7	100	97.222	Poecilia_mexicana
ENSFHEG00000006349	lsm7	76	77.907	ENSPREG00000016718	lsm7	66	77.907	Poecilia_reticulata
ENSFHEG00000006349	lsm7	65	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSFHEG00000006349	lsm7	90	96.040	ENSPCOG00000017177	LSM7	99	96.040	Propithecus_coquereli
ENSFHEG00000006349	lsm7	90	98.020	ENSPNYG00000006938	lsm7	98	98.020	Pundamilia_nyererei
ENSFHEG00000006349	lsm7	90	97.030	ENSPNAG00000010141	lsm7	99	97.030	Pygocentrus_nattereri
ENSFHEG00000006349	lsm7	89	96.000	ENSRNOG00000019552	Lsm7	88	95.604	Rattus_norvegicus
ENSFHEG00000006349	lsm7	90	96.040	ENSRBIG00000035978	LSM7	98	96.040	Rhinopithecus_bieti
ENSFHEG00000006349	lsm7	90	96.040	ENSRROG00000034044	LSM7	98	96.040	Rhinopithecus_roxellana
ENSFHEG00000006349	lsm7	79	47.826	YNL147W	-	74	48.235	Saccharomyces_cerevisiae
ENSFHEG00000006349	lsm7	90	96.040	ENSSBOG00000034899	LSM7	98	96.040	Saimiri_boliviensis_boliviensis
ENSFHEG00000006349	lsm7	90	97.030	ENSSFOG00015006728	lsm7	98	97.030	Scleropages_formosus
ENSFHEG00000006349	lsm7	90	99.010	ENSSMAG00000004195	lsm7	93	99.010	Scophthalmus_maximus
ENSFHEG00000006349	lsm7	90	99.010	ENSSDUG00000001863	lsm7	98	99.010	Seriola_dumerili
ENSFHEG00000006349	lsm7	90	99.010	ENSSLDG00000016339	lsm7	98	99.010	Seriola_lalandi_dorsalis
ENSFHEG00000006349	lsm7	95	95.283	ENSSPAG00000015221	lsm7	98	99.010	Stegastes_partitus
ENSFHEG00000006349	lsm7	90	96.040	ENSSSCG00000013463	LSM7	99	96.040	Sus_scrofa
ENSFHEG00000006349	lsm7	90	98.020	ENSTGUG00000000067	LSM7	100	98.020	Taeniopygia_guttata
ENSFHEG00000006349	lsm7	90	98.020	ENSTRUG00000022913	lsm7	98	98.020	Takifugu_rubripes
ENSFHEG00000006349	lsm7	90	98.020	ENSTNIG00000015525	lsm7	98	98.020	Tetraodon_nigroviridis
ENSFHEG00000006349	lsm7	63	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSFHEG00000006349	lsm7	90	95.050	ENSUAMG00000000912	LSM7	77	94.565	Ursus_americanus
ENSFHEG00000006349	lsm7	94	92.381	ENSUMAG00000006556	LSM7	71	95.604	Ursus_maritimus
ENSFHEG00000006349	lsm7	63	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSFHEG00000006349	lsm7	90	95.050	ENSXETG00000022166	lsm7	91	94.565	Xenopus_tropicalis
ENSFHEG00000006349	lsm7	90	100.000	ENSXCOG00000002572	lsm7	99	100.000	Xiphophorus_couchianus
ENSFHEG00000006349	lsm7	90	100.000	ENSXMAG00000018630	lsm7	98	100.000	Xiphophorus_maculatus