EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000006428 (Gene tree)
Gene ID: 105933890
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Minus strand
Length: 25770 bases
Position: chrKN811417.1:690962-716731
Accession: 105933890
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000024626	UPF1_Zn_bind	PF09416.10	7.4e-75	1	1
ENSFHEP00000005372	UPF1_Zn_bind	PF09416.10	7.7e-75	1	1
ENSFHEP00000005383	UPF1_Zn_bind	PF09416.10	8.2e-75	1	1
ENSFHEP00000024626	ResIII	PF04851.15	4.4e-05	1	1
ENSFHEP00000005372	ResIII	PF04851.15	4.4e-05	1	1
ENSFHEP00000005383	ResIII	PF04851.15	4.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000007277	-	5860	-	ENSFHEP00000005372	1078 (aa)	-	-
ENSFHET00000007262	-	5956	XM_012873642	ENSFHEP00000005383	1110 (aa)	XP_012729096	UPI000644E465
ENSFHET00000007300	-	5806	-	ENSFHEP00000024626	1060 (aa)	-	-

Gene Model

Click here to download ENSFHEG00000006428's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000006428's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000006428	upf1	86	92.519	ENSFHEG00000016276	-	96	92.519

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000006428	upf1	100	88.319	ENSG00000005007	UPF1	100	88.319	Homo_sapiens
ENSFHEG00000006428	upf1	100	89.267	ENSAPOG00000010916	-	100	89.705	Acanthochromis_polyacanthus
ENSFHEG00000006428	upf1	100	93.119	ENSAPOG00000023773	upf1	100	93.744	Acanthochromis_polyacanthus
ENSFHEG00000006428	upf1	100	87.676	ENSAMEG00000011474	UPF1	100	87.676	Ailuropoda_melanoleuca
ENSFHEG00000006428	upf1	93	89.565	ENSACIG00000010985	-	100	89.961	Amphilophus_citrinellus
ENSFHEG00000006428	upf1	100	92.252	ENSACIG00000019949	upf1	100	93.153	Amphilophus_citrinellus
ENSFHEG00000006428	upf1	100	93.119	ENSAOCG00000018519	upf1	100	93.744	Amphiprion_ocellaris
ENSFHEG00000006428	upf1	100	89.356	ENSAOCG00000006352	-	100	89.794	Amphiprion_ocellaris
ENSFHEG00000006428	upf1	100	89.267	ENSAPEG00000006292	-	100	89.705	Amphiprion_percula
ENSFHEG00000006428	upf1	100	93.119	ENSAPEG00000016344	upf1	100	93.744	Amphiprion_percula
ENSFHEG00000006428	upf1	100	91.533	ENSATEG00000017867	upf1	100	92.692	Anabas_testudineus
ENSFHEG00000006428	upf1	100	89.177	ENSATEG00000016606	-	100	89.615	Anabas_testudineus
ENSFHEG00000006428	upf1	94	90.038	ENSAPLG00000009175	UPF1	100	90.038	Anas_platyrhynchos
ENSFHEG00000006428	upf1	94	88.136	ENSANAG00000024107	UPF1	95	88.136	Aotus_nancymaae
ENSFHEG00000006428	upf1	100	91.982	ENSACLG00000007181	upf1	100	93.063	Astatotilapia_calliptera
ENSFHEG00000006428	upf1	100	89.177	ENSACLG00000022630	-	100	89.535	Astatotilapia_calliptera
ENSFHEG00000006428	upf1	100	90.412	ENSAMXG00000042187	upf1	100	91.367	Astyanax_mexicanus
ENSFHEG00000006428	upf1	100	87.786	ENSBTAG00000020922	UPF1	100	87.786	Bos_taurus
ENSFHEG00000006428	upf1	87	52.058	WBGene00004880	smg-2	99	48.226	Caenorhabditis_elegans
ENSFHEG00000006428	upf1	100	87.467	ENSCJAG00000019627	UPF1	100	87.467	Callithrix_jacchus
ENSFHEG00000006428	upf1	100	87.555	ENSCAFG00000014578	UPF1	100	87.555	Canis_familiaris
ENSFHEG00000006428	upf1	100	88.407	ENSCAFG00020012347	UPF1	100	88.407	Canis_lupus_dingo
ENSFHEG00000006428	upf1	100	88.642	ENSCHIG00000011018	UPF1	100	88.642	Capra_hircus
ENSFHEG00000006428	upf1	94	89.548	ENSTSYG00000008877	UPF1	98	89.548	Carlito_syrichta
ENSFHEG00000006428	upf1	95	88.879	ENSCAPG00000005758	UPF1	95	89.613	Cavia_aperea
ENSFHEG00000006428	upf1	100	88.523	ENSCPOG00000025463	UPF1	100	88.523	Cavia_porcellus
ENSFHEG00000006428	upf1	100	88.319	ENSCCAG00000032175	UPF1	100	88.319	Cebus_capucinus
ENSFHEG00000006428	upf1	94	89.603	ENSCATG00000040306	UPF1	98	89.603	Cercocebus_atys
ENSFHEG00000006428	upf1	95	89.306	ENSCLAG00000004037	UPF1	99	89.548	Chinchilla_lanigera
ENSFHEG00000006428	upf1	100	88.319	ENSCSAG00000005276	UPF1	100	88.407	Chlorocebus_sabaeus
ENSFHEG00000006428	upf1	100	89.127	ENSCPBG00000012513	UPF1	100	89.127	Chrysemys_picta_bellii
ENSFHEG00000006428	upf1	80	78.788	ENSCING00000021399	-	99	78.438	Ciona_intestinalis
ENSFHEG00000006428	upf1	99	71.312	ENSCSAVG00000006533	-	99	71.312	Ciona_savignyi
ENSFHEG00000006428	upf1	94	89.454	ENSCANG00000029819	UPF1	97	89.454	Colobus_angolensis_palliatus
ENSFHEG00000006428	upf1	100	88.711	ENSCGRG00001021067	Upf1	100	88.711	Cricetulus_griseus_chok1gshd
ENSFHEG00000006428	upf1	94	89.380	ENSCGRG00000013480	Upf1	98	89.380	Cricetulus_griseus_crigri
ENSFHEG00000006428	upf1	100	86.882	ENSCSEG00000017239	upf1	100	87.242	Cynoglossus_semilaevis
ENSFHEG00000006428	upf1	100	89.337	ENSCSEG00000016159	-	100	89.337	Cynoglossus_semilaevis
ENSFHEG00000006428	upf1	100	88.998	ENSCVAG00000010561	upf1	100	89.257	Cyprinodon_variegatus
ENSFHEG00000006428	upf1	100	89.964	ENSDARG00000016302	upf1	100	90.917	Danio_rerio
ENSFHEG00000006428	upf1	94	87.206	ENSDORG00000009984	Upf1	95	87.206	Dipodomys_ordii
ENSFHEG00000006428	upf1	89	71.309	FBgn0030354	Upf1	88	67.240	Drosophila_melanogaster
ENSFHEG00000006428	upf1	57	86.755	ENSEBUG00000010069	upf1	96	87.086	Eptatretus_burgeri
ENSFHEG00000006428	upf1	100	88.642	ENSEASG00005006549	UPF1	100	88.642	Equus_asinus_asinus
ENSFHEG00000006428	upf1	100	88.642	ENSECAG00000010639	UPF1	100	88.642	Equus_caballus
ENSFHEG00000006428	upf1	100	89.394	ENSELUG00000012916	-	100	89.750	Esox_lucius
ENSFHEG00000006428	upf1	100	90.493	ENSELUG00000020917	upf1	100	90.942	Esox_lucius
ENSFHEG00000006428	upf1	100	87.555	ENSFCAG00000009757	UPF1	100	87.555	Felis_catus
ENSFHEG00000006428	upf1	95	90.274	ENSFALG00000009312	UPF1	96	90.341	Ficedula_albicollis
ENSFHEG00000006428	upf1	94	89.454	ENSFDAG00000014816	UPF1	99	89.454	Fukomys_damarensis
ENSFHEG00000006428	upf1	100	88.121	ENSGMOG00000007541	upf1	100	88.475	Gadus_morhua
ENSFHEG00000006428	upf1	100	89.175	ENSGALG00000003220	UPF1	100	89.086	Gallus_gallus
ENSFHEG00000006428	upf1	72	89.908	ENSGAFG00000015443	-	87	94.640	Gambusia_affinis
ENSFHEG00000006428	upf1	100	88.988	ENSGAFG00000004831	upf1	100	89.167	Gambusia_affinis
ENSFHEG00000006428	upf1	100	89.714	ENSGAGG00000022217	UPF1	100	89.803	Gopherus_agassizii
ENSFHEG00000006428	upf1	94	90.390	ENSGGOG00000002608	UPF1	99	90.390	Gorilla_gorilla
ENSFHEG00000006428	upf1	100	85.056	ENSHBUG00000008939	upf1	95	93.261	Haplochromis_burtoni
ENSFHEG00000006428	upf1	93	88.608	ENSHBUG00000014694	upf1	100	88.608	Haplochromis_burtoni
ENSFHEG00000006428	upf1	100	87.467	ENSHGLG00000010900	UPF1	100	87.467	Heterocephalus_glaber_female
ENSFHEG00000006428	upf1	94	87.759	ENSHGLG00100005904	UPF1	96	87.759	Heterocephalus_glaber_male
ENSFHEG00000006428	upf1	100	88.819	ENSHCOG00000008918	upf1	100	89.559	Hippocampus_comes
ENSFHEG00000006428	upf1	100	90.412	ENSIPUG00000005108	UPF1	100	91.367	Ictalurus_punctatus
ENSFHEG00000006428	upf1	100	88.319	ENSSTOG00000009196	UPF1	100	88.319	Ictidomys_tridecemlineatus
ENSFHEG00000006428	upf1	100	88.007	ENSJJAG00000023151	Upf1	100	88.007	Jaculus_jaculus
ENSFHEG00000006428	upf1	100	88.909	ENSKMAG00000004962	upf1	100	89.257	Kryptolebias_marmoratus
ENSFHEG00000006428	upf1	100	88.998	ENSLBEG00000027848	-	100	89.535	Labrus_bergylta
ENSFHEG00000006428	upf1	98	94.660	ENSLBEG00000014862	upf1	100	92.672	Labrus_bergylta
ENSFHEG00000006428	upf1	63	90.213	ENSLACG00000008482	UPF1	100	90.213	Latimeria_chalumnae
ENSFHEG00000006428	upf1	100	90.027	ENSLOCG00000002072	upf1	100	90.844	Lepisosteus_oculatus
ENSFHEG00000006428	upf1	100	87.621	ENSLAFG00000014963	UPF1	100	87.533	Loxodonta_africana
ENSFHEG00000006428	upf1	100	88.085	ENSMFAG00000037748	UPF1	100	88.085	Macaca_fascicularis
ENSFHEG00000006428	upf1	100	87.852	ENSMMUG00000023286	UPF1	100	87.852	Macaca_mulatta
ENSFHEG00000006428	upf1	100	88.085	ENSMNEG00000000046	UPF1	100	88.085	Macaca_nemestrina
ENSFHEG00000006428	upf1	94	89.454	ENSMLEG00000028404	UPF1	99	89.454	Mandrillus_leucophaeus
ENSFHEG00000006428	upf1	100	91.436	ENSMAMG00000006229	upf1	100	92.864	Mastacembelus_armatus
ENSFHEG00000006428	upf1	100	89.417	ENSMAMG00000006231	-	100	89.991	Mastacembelus_armatus
ENSFHEG00000006428	upf1	100	91.749	ENSMZEG00005003489	upf1	100	93.011	Maylandia_zebra
ENSFHEG00000006428	upf1	100	89.177	ENSMZEG00005016386	-	100	89.535	Maylandia_zebra
ENSFHEG00000006428	upf1	94	89.642	ENSMGAG00000004745	UPF1	100	89.642	Meleagris_gallopavo
ENSFHEG00000006428	upf1	94	89.454	ENSMAUG00000011398	Upf1	95	89.454	Mesocricetus_auratus
ENSFHEG00000006428	upf1	100	88.407	ENSMICG00000001659	UPF1	100	88.407	Microcebus_murinus
ENSFHEG00000006428	upf1	100	87.940	ENSMOCG00000005699	Upf1	100	87.940	Microtus_ochrogaster
ENSFHEG00000006428	upf1	100	90.909	ENSMMOG00000007881	upf1	100	91.121	Mola_mola
ENSFHEG00000006428	upf1	94	87.311	ENSMMOG00000007537	-	99	87.773	Mola_mola
ENSFHEG00000006428	upf1	100	87.566	ENSMODG00000003689	UPF1	100	87.566	Monodelphis_domestica
ENSFHEG00000006428	upf1	100	91.544	ENSMALG00000000144	upf1	100	91.809	Monopterus_albus
ENSFHEG00000006428	upf1	100	87.790	ENSMALG00000018100	-	100	88.225	Monopterus_albus
ENSFHEG00000006428	upf1	100	88.622	MGP_CAROLIEiJ_G0031142	Upf1	100	88.622	Mus_caroli
ENSFHEG00000006428	upf1	100	88.622	ENSMUSG00000058301	Upf1	100	88.622	Mus_musculus
ENSFHEG00000006428	upf1	100	88.622	MGP_PahariEiJ_G0021607	Upf1	100	88.622	Mus_pahari
ENSFHEG00000006428	upf1	100	88.622	MGP_SPRETEiJ_G0032260	Upf1	100	88.622	Mus_spretus
ENSFHEG00000006428	upf1	100	88.407	ENSMPUG00000015516	UPF1	100	88.407	Mustela_putorius_furo
ENSFHEG00000006428	upf1	99	88.188	ENSMLUG00000012122	UPF1	99	88.188	Myotis_lucifugus
ENSFHEG00000006428	upf1	100	87.621	ENSNGAG00000024107	Upf1	100	87.621	Nannospalax_galili
ENSFHEG00000006428	upf1	100	90.000	ENSNBRG00000000670	upf1	100	91.081	Neolamprologus_brichardi
ENSFHEG00000006428	upf1	100	85.936	ENSNBRG00000022069	-	100	89.519	Neolamprologus_brichardi
ENSFHEG00000006428	upf1	94	83.804	ENSNLEG00000006062	UPF1	99	83.804	Nomascus_leucogenys
ENSFHEG00000006428	upf1	83	83.430	ENSMEUG00000014146	-	83	83.430	Notamacropus_eugenii
ENSFHEG00000006428	upf1	94	83.761	ENSOPRG00000014018	UPF1	99	83.761	Ochotona_princeps
ENSFHEG00000006428	upf1	100	88.110	ENSODEG00000012426	UPF1	100	88.287	Octodon_degus
ENSFHEG00000006428	upf1	100	89.177	ENSONIG00000012729	-	100	89.436	Oreochromis_niloticus
ENSFHEG00000006428	upf1	98	95.253	ENSONIG00000010452	upf1	100	93.100	Oreochromis_niloticus
ENSFHEG00000006428	upf1	100	88.116	ENSOANG00000004568	UPF1	100	88.116	Ornithorhynchus_anatinus
ENSFHEG00000006428	upf1	100	89.257	ENSORLG00000008453	upf1	100	89.257	Oryzias_latipes
ENSFHEG00000006428	upf1	100	89.346	ENSORLG00020014758	upf1	100	89.346	Oryzias_latipes_hni
ENSFHEG00000006428	upf1	100	89.346	ENSORLG00015010165	upf1	100	89.346	Oryzias_latipes_hsok
ENSFHEG00000006428	upf1	100	89.714	ENSOMEG00000003665	upf1	100	89.714	Oryzias_melastigma
ENSFHEG00000006428	upf1	100	88.407	ENSOGAG00000012866	UPF1	100	88.407	Otolemur_garnettii
ENSFHEG00000006428	upf1	96	86.509	ENSOARG00000010739	UPF1	100	86.509	Ovis_aries
ENSFHEG00000006428	upf1	94	89.454	ENSPPAG00000043884	UPF1	96	89.454	Pan_paniscus
ENSFHEG00000006428	upf1	100	87.555	ENSPPRG00000023470	UPF1	100	87.555	Panthera_pardus
ENSFHEG00000006428	upf1	94	88.392	ENSPTIG00000010159	UPF1	99	88.392	Panthera_tigris_altaica
ENSFHEG00000006428	upf1	100	88.085	ENSPTRG00000010721	UPF1	100	88.085	Pan_troglodytes
ENSFHEG00000006428	upf1	100	88.085	ENSPANG00000008847	UPF1	100	88.085	Papio_anubis
ENSFHEG00000006428	upf1	89	94.292	ENSPKIG00000006069	upf1	97	92.201	Paramormyrops_kingsleyae
ENSFHEG00000006428	upf1	70	89.161	ENSPSIG00000009491	UPF1	100	89.161	Pelodiscus_sinensis
ENSFHEG00000006428	upf1	96	95.527	ENSPMGG00000017327	upf1	100	91.039	Periophthalmus_magnuspinnatus
ENSFHEG00000006428	upf1	100	87.852	ENSPEMG00000001085	Upf1	100	87.852	Peromyscus_maniculatus_bairdii
ENSFHEG00000006428	upf1	100	85.192	ENSPMAG00000001206	upf1	100	85.228	Petromyzon_marinus
ENSFHEG00000006428	upf1	100	88.909	ENSPCIG00000006156	UPF1	100	88.909	Phascolarctos_cinereus
ENSFHEG00000006428	upf1	100	93.369	ENSPLAG00000018155	-	100	93.369	Poecilia_latipinna
ENSFHEG00000006428	upf1	100	88.899	ENSPLAG00000016232	-	100	89.167	Poecilia_latipinna
ENSFHEG00000006428	upf1	100	88.819	ENSPMEG00000016319	-	100	89.088	Poecilia_mexicana
ENSFHEG00000006428	upf1	100	93.243	ENSPMEG00000011443	-	100	93.243	Poecilia_mexicana
ENSFHEG00000006428	upf1	100	88.899	ENSPREG00000011247	-	100	89.167	Poecilia_reticulata
ENSFHEG00000006428	upf1	100	93.548	ENSPREG00000009940	upf1	100	93.548	Poecilia_reticulata
ENSFHEG00000006428	upf1	100	82.997	ENSPPYG00000009752	UPF1	100	82.997	Pongo_abelii
ENSFHEG00000006428	upf1	70	97.643	ENSPCAG00000012962	UPF1	68	97.643	Procavia_capensis
ENSFHEG00000006428	upf1	100	88.018	ENSPCOG00000023813	UPF1	100	88.018	Propithecus_coquereli
ENSFHEG00000006428	upf1	71	94.872	ENSPVAG00000003183	UPF1	69	94.872	Pteropus_vampyrus
ENSFHEG00000006428	upf1	100	89.177	ENSPNYG00000016731	-	100	89.535	Pundamilia_nyererei
ENSFHEG00000006428	upf1	100	91.749	ENSPNYG00000003694	upf1	100	93.011	Pundamilia_nyererei
ENSFHEG00000006428	upf1	100	90.412	ENSPNAG00000025614	upf1	100	91.367	Pygocentrus_nattereri
ENSFHEG00000006428	upf1	100	88.622	ENSRNOG00000020134	Upf1	100	88.622	Rattus_norvegicus
ENSFHEG00000006428	upf1	94	87.382	ENSRBIG00000013894	UPF1	98	90.476	Rhinopithecus_bieti
ENSFHEG00000006428	upf1	94	89.454	ENSRROG00000040935	UPF1	98	90.476	Rhinopithecus_roxellana
ENSFHEG00000006428	upf1	77	57.038	YMR080C	NAM7	84	57.038	Saccharomyces_cerevisiae
ENSFHEG00000006428	upf1	94	89.444	ENSSBOG00000023632	UPF1	96	89.444	Saimiri_boliviensis_boliviensis
ENSFHEG00000006428	upf1	94	89.831	ENSSHAG00000010499	UPF1	100	89.831	Sarcophilus_harrisii
ENSFHEG00000006428	upf1	100	89.973	ENSSFOG00015021095	upf1	100	90.689	Scleropages_formosus
ENSFHEG00000006428	upf1	100	89.417	ENSSMAG00000021018	-	100	89.714	Scophthalmus_maximus
ENSFHEG00000006428	upf1	97	94.910	ENSSMAG00000005055	upf1	100	91.964	Scophthalmus_maximus
ENSFHEG00000006428	upf1	100	89.187	ENSSDUG00000009629	-	100	89.624	Seriola_dumerili
ENSFHEG00000006428	upf1	100	91.615	ENSSDUG00000013320	upf1	100	93.131	Seriola_dumerili
ENSFHEG00000006428	upf1	100	92.439	ENSSLDG00000020868	upf1	100	93.184	Seriola_lalandi_dorsalis
ENSFHEG00000006428	upf1	100	89.187	ENSSLDG00000006878	-	100	89.624	Seriola_lalandi_dorsalis
ENSFHEG00000006428	upf1	100	89.991	ENSSPUG00000010538	UPF1	100	89.991	Sphenodon_punctatus
ENSFHEG00000006428	upf1	100	89.078	ENSSPAG00000011521	-	100	89.526	Stegastes_partitus
ENSFHEG00000006428	upf1	100	90.746	ENSSPAG00000000003	upf1	100	91.375	Stegastes_partitus
ENSFHEG00000006428	upf1	100	88.642	ENSSSCG00000039301	UPF1	99	90.485	Sus_scrofa
ENSFHEG00000006428	upf1	86	85.426	ENSTGUG00000001057	UPF1	100	89.349	Taeniopygia_guttata
ENSFHEG00000006428	upf1	100	88.183	ENSTRUG00000005131	-	100	88.809	Takifugu_rubripes
ENSFHEG00000006428	upf1	97	95.440	ENSTRUG00000000150	upf1	100	92.225	Takifugu_rubripes
ENSFHEG00000006428	upf1	100	84.916	ENSTTRG00000011544	UPF1	100	84.916	Tursiops_truncatus
ENSFHEG00000006428	upf1	100	88.407	ENSUAMG00000007093	UPF1	100	88.407	Ursus_americanus
ENSFHEG00000006428	upf1	95	90.237	ENSUMAG00000006652	UPF1	99	91.179	Ursus_maritimus
ENSFHEG00000006428	upf1	100	88.407	ENSVVUG00000007797	UPF1	100	88.407	Vulpes_vulpes
ENSFHEG00000006428	upf1	100	76.178	ENSXETG00000013602	upf1	100	76.465	Xenopus_tropicalis
ENSFHEG00000006428	upf1	93	90.010	ENSXCOG00000005764	-	99	90.202	Xiphophorus_couchianus
ENSFHEG00000006428	upf1	97	92.458	ENSXCOG00000015275	-	96	92.458	Xiphophorus_couchianus
ENSFHEG00000006428	upf1	100	88.998	ENSXMAG00000002540	-	100	89.177	Xiphophorus_maculatus
ENSFHEG00000006428	upf1	100	92.613	ENSXMAG00000001703	-	100	92.613	Xiphophorus_maculatus