EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000007687 (Gene tree)
Gene ID: 105926516
Gene Symbol: smarca5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Minus strand
Length: 13016 bases
Position: chrKN811298.1:2023193-2036208
Accession: 105926516
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000025416	ResIII	PF04851.15	4.4e-11	1	1
ENSFHEP00000025410	ResIII	PF04851.15	5.1e-11	1	1
ENSFHEP00000025410	DEAD	PF00270.29	1.9e-06	1	1
ENSFHEP00000025416	DEAD	PF00270.29	2.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000005301	-	2820	-	ENSFHEP00000025410	939 (aa)	-	-
ENSFHET00000005277	-	3940	XM_012862890	ENSFHEP00000025416	1046 (aa)	XP_012718344	UPI000644DD29

Gene Model

Click here to download ENSFHEG00000007687's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000007687's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000007687	smarca5	58	43.561	ENSFHEG00000022950	hells	87	39.486
ENSFHEG00000007687	smarca5	58	41.209	ENSFHEG00000012420	chd1l	54	41.575

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000007687	smarca5	94	82.828	ENSG00000102038	SMARCA1	99	79.103	Homo_sapiens
ENSFHEG00000007687	smarca5	100	94.365	ENSAPOG00000016035	smarca5	99	97.059	Acanthochromis_polyacanthus
ENSFHEG00000007687	smarca5	94	81.936	ENSAMEG00000015218	SMARCA1	93	82.495	Ailuropoda_melanoleuca
ENSFHEG00000007687	smarca5	90	97.390	ENSACIG00000016982	smarca5	100	97.447	Amphilophus_citrinellus
ENSFHEG00000007687	smarca5	100	94.365	ENSAOCG00000015578	smarca5	100	95.320	Amphiprion_ocellaris
ENSFHEG00000007687	smarca5	100	94.365	ENSAPEG00000011117	smarca5	99	97.400	Amphiprion_percula
ENSFHEG00000007687	smarca5	100	95.411	ENSATEG00000012894	smarca5	100	95.411	Anabas_testudineus
ENSFHEG00000007687	smarca5	94	83.910	ENSAPLG00000013149	SMARCA1	99	83.910	Anas_platyrhynchos
ENSFHEG00000007687	smarca5	94	84.296	ENSACAG00000011376	SMARCA1	94	84.623	Anolis_carolinensis
ENSFHEG00000007687	smarca5	94	78.081	ENSANAG00000023098	SMARCA1	93	78.717	Aotus_nancymaae
ENSFHEG00000007687	smarca5	100	95.415	ENSACLG00000025356	smarca5	100	95.415	Astatotilapia_calliptera
ENSFHEG00000007687	smarca5	100	89.810	ENSAMXG00000005709	smarca5	100	89.714	Astyanax_mexicanus
ENSFHEG00000007687	smarca5	91	85.548	ENSAMXG00000011227	smarca1	99	85.404	Astyanax_mexicanus
ENSFHEG00000007687	smarca5	94	83.180	ENSBTAG00000002292	SMARCA1	96	79.901	Bos_taurus
ENSFHEG00000007687	smarca5	91	66.589	WBGene00002169	isw-1	95	63.261	Caenorhabditis_elegans
ENSFHEG00000007687	smarca5	94	83.503	ENSCJAG00000002868	SMARCA1	99	79.103	Callithrix_jacchus
ENSFHEG00000007687	smarca5	94	73.684	ENSCAFG00000018673	SMARCA1	99	75.176	Canis_familiaris
ENSFHEG00000007687	smarca5	94	83.030	ENSCAFG00020001751	SMARCA1	93	83.605	Canis_lupus_dingo
ENSFHEG00000007687	smarca5	94	82.877	ENSCHIG00000009837	SMARCA1	98	79.749	Capra_hircus
ENSFHEG00000007687	smarca5	94	83.232	ENSTSYG00000004240	SMARCA1	94	84.688	Carlito_syrichta
ENSFHEG00000007687	smarca5	91	84.912	ENSCPOG00000013601	SMARCA1	93	82.186	Cavia_porcellus
ENSFHEG00000007687	smarca5	94	80.101	ENSCCAG00000030817	SMARCA1	99	76.527	Cebus_capucinus
ENSFHEG00000007687	smarca5	91	85.497	ENSCATG00000015921	SMARCA1	99	78.208	Cercocebus_atys
ENSFHEG00000007687	smarca5	94	82.323	ENSCLAG00000002171	SMARCA1	93	82.892	Chinchilla_lanigera
ENSFHEG00000007687	smarca5	94	82.828	ENSCSAG00000008460	SMARCA1	99	79.103	Chlorocebus_sabaeus
ENSFHEG00000007687	smarca5	94	83.891	ENSCPBG00000001146	SMARCA1	93	84.216	Chrysemys_picta_bellii
ENSFHEG00000007687	smarca5	95	73.731	ENSCING00000004110	swi/snf	99	73.731	Ciona_intestinalis
ENSFHEG00000007687	smarca5	95	73.069	ENSCSAVG00000004620	-	99	75.391	Ciona_savignyi
ENSFHEG00000007687	smarca5	94	82.929	ENSCANG00000007183	SMARCA1	99	79.198	Colobus_angolensis_palliatus
ENSFHEG00000007687	smarca5	94	82.121	ENSCGRG00001010776	Smarca1	93	82.688	Cricetulus_griseus_chok1gshd
ENSFHEG00000007687	smarca5	91	84.678	ENSCGRG00000015301	Smarca1	94	83.228	Cricetulus_griseus_crigri
ENSFHEG00000007687	smarca5	100	94.168	ENSCSEG00000000328	smarca5	100	94.551	Cynoglossus_semilaevis
ENSFHEG00000007687	smarca5	100	97.514	ENSCVAG00000008668	smarca5	99	99.055	Cyprinodon_variegatus
ENSFHEG00000007687	smarca5	100	89.323	ENSDARG00000052348	smarca5	100	89.228	Danio_rerio
ENSFHEG00000007687	smarca5	93	82.583	ENSDARG00000012776	smarca1	96	82.583	Danio_rerio
ENSFHEG00000007687	smarca5	91	85.029	ENSDNOG00000004315	SMARCA1	97	79.881	Dasypus_novemcinctus
ENSFHEG00000007687	smarca5	91	85.514	ENSDORG00000009270	Smarca1	90	84.836	Dipodomys_ordii
ENSFHEG00000007687	smarca5	91	78.074	FBgn0011604	Iswi	99	71.714	Drosophila_melanogaster
ENSFHEG00000007687	smarca5	78	81.818	ENSETEG00000017426	SMARCA1	83	81.818	Echinops_telfairi
ENSFHEG00000007687	smarca5	96	80.834	ENSEBUG00000001239	smarca5	99	80.834	Eptatretus_burgeri
ENSFHEG00000007687	smarca5	94	79.150	ENSEASG00005008218	SMARCA1	99	79.757	Equus_asinus_asinus
ENSFHEG00000007687	smarca5	94	82.929	ENSECAG00000012106	SMARCA1	98	80.039	Equus_caballus
ENSFHEG00000007687	smarca5	75	87.347	ENSEEUG00000014927	SMARCA1	80	84.437	Erinaceus_europaeus
ENSFHEG00000007687	smarca5	93	83.759	ENSELUG00000010515	smarca1	96	83.759	Esox_lucius
ENSFHEG00000007687	smarca5	94	82.929	ENSFCAG00000018496	SMARCA1	93	83.503	Felis_catus
ENSFHEG00000007687	smarca5	91	85.614	ENSFALG00000000209	SMARCA1	98	84.902	Ficedula_albicollis
ENSFHEG00000007687	smarca5	91	83.968	ENSFDAG00000009818	SMARCA1	94	83.246	Fukomys_damarensis
ENSFHEG00000007687	smarca5	91	85.848	ENSGALG00000008431	SMARCA1	95	85.057	Gallus_gallus
ENSFHEG00000007687	smarca5	100	97.419	ENSGAFG00000017731	smarca5	100	97.419	Gambusia_affinis
ENSFHEG00000007687	smarca5	93	84.362	ENSGAGG00000023575	SMARCA1	99	84.362	Gopherus_agassizii
ENSFHEG00000007687	smarca5	69	96.000	ENSGGOG00000012841	-	92	79.854	Gorilla_gorilla
ENSFHEG00000007687	smarca5	94	82.020	ENSHGLG00000003080	SMARCA1	93	82.587	Heterocephalus_glaber_female
ENSFHEG00000007687	smarca5	91	84.678	ENSHGLG00100001102	SMARCA1	99	82.085	Heterocephalus_glaber_male
ENSFHEG00000007687	smarca5	97	96.634	ENSHCOG00000005458	smarca5	100	94.747	Hippocampus_comes
ENSFHEG00000007687	smarca5	94	83.469	ENSIPUG00000016905	Smarca1	99	83.809	Ictalurus_punctatus
ENSFHEG00000007687	smarca5	100	89.027	ENSIPUG00000005229	SMARCA5	99	92.315	Ictalurus_punctatus
ENSFHEG00000007687	smarca5	94	82.828	ENSSTOG00000014524	SMARCA1	99	79.883	Ictidomys_tridecemlineatus
ENSFHEG00000007687	smarca5	91	84.795	ENSJJAG00000002593	Smarca1	93	82.270	Jaculus_jaculus
ENSFHEG00000007687	smarca5	100	95.985	ENSKMAG00000003777	smarca5	100	95.985	Kryptolebias_marmoratus
ENSFHEG00000007687	smarca5	100	94.551	ENSLBEG00000018112	smarca5	100	94.646	Labrus_bergylta
ENSFHEG00000007687	smarca5	94	94.534	ENSLBEG00000013295	SMARCA1	100	97.342	Labrus_bergylta
ENSFHEG00000007687	smarca5	94	84.506	ENSLACG00000016697	SMARCA1	95	85.258	Latimeria_chalumnae
ENSFHEG00000007687	smarca5	93	85.670	ENSLOCG00000014591	smarca1	95	85.670	Lepisosteus_oculatus
ENSFHEG00000007687	smarca5	91	84.678	ENSLAFG00000000896	SMARCA1	98	82.186	Loxodonta_africana
ENSFHEG00000007687	smarca5	94	82.828	ENSMFAG00000002117	SMARCA1	94	84.550	Macaca_fascicularis
ENSFHEG00000007687	smarca5	91	85.497	ENSMMUG00000008818	SMARCA1	97	84.665	Macaca_mulatta
ENSFHEG00000007687	smarca5	91	85.497	ENSMNEG00000041768	SMARCA1	94	84.550	Macaca_nemestrina
ENSFHEG00000007687	smarca5	94	82.828	ENSMLEG00000043198	SMARCA1	99	79.103	Mandrillus_leucophaeus
ENSFHEG00000007687	smarca5	100	94.381	ENSMAMG00000014294	smarca5	100	94.952	Mastacembelus_armatus
ENSFHEG00000007687	smarca5	100	95.415	ENSMZEG00005009369	smarca5	100	95.415	Maylandia_zebra
ENSFHEG00000007687	smarca5	94	82.897	ENSMGAG00000007042	SMARCA1	98	82.897	Meleagris_gallopavo
ENSFHEG00000007687	smarca5	91	84.795	ENSMAUG00000008133	Smarca1	91	82.513	Mesocricetus_auratus
ENSFHEG00000007687	smarca5	94	83.232	ENSMICG00000015768	SMARCA1	93	83.809	Microcebus_murinus
ENSFHEG00000007687	smarca5	91	84.795	ENSMOCG00000009464	Smarca1	93	82.067	Microtus_ochrogaster
ENSFHEG00000007687	smarca5	95	95.368	ENSMMOG00000005547	smarca5	100	95.368	Mola_mola
ENSFHEG00000007687	smarca5	94	83.894	ENSMODG00000013187	-	94	83.894	Monodelphis_domestica
ENSFHEG00000007687	smarca5	100	94.359	ENSMALG00000002081	smarca5	100	94.752	Monopterus_albus
ENSFHEG00000007687	smarca5	91	84.912	MGP_CAROLIEiJ_G0033034	Smarca1	93	82.168	Mus_caroli
ENSFHEG00000007687	smarca5	91	84.912	ENSMUSG00000031099	Smarca1	93	82.270	Mus_musculus
ENSFHEG00000007687	smarca5	91	84.912	MGP_PahariEiJ_G0031579	Smarca1	92	82.551	Mus_pahari
ENSFHEG00000007687	smarca5	91	84.912	MGP_SPRETEiJ_G0034192	Smarca1	93	82.270	Mus_spretus
ENSFHEG00000007687	smarca5	94	82.036	ENSMPUG00000017423	SMARCA1	88	82.596	Mustela_putorius_furo
ENSFHEG00000007687	smarca5	94	80.777	ENSMLUG00000029614	SMARCA1	93	81.024	Myotis_lucifugus
ENSFHEG00000007687	smarca5	91	85.146	ENSNGAG00000006492	Smarca1	91	83.037	Nannospalax_galili
ENSFHEG00000007687	smarca5	95	97.487	ENSNBRG00000004463	smarca5	100	97.487	Neolamprologus_brichardi
ENSFHEG00000007687	smarca5	91	84.678	ENSNLEG00000015179	SMARCA1	94	83.827	Nomascus_leucogenys
ENSFHEG00000007687	smarca5	91	76.125	ENSMEUG00000008819	SMARCA1	98	76.150	Notamacropus_eugenii
ENSFHEG00000007687	smarca5	91	83.852	ENSODEG00000012163	SMARCA1	97	78.627	Octodon_degus
ENSFHEG00000007687	smarca5	100	95.511	ENSONIG00000009993	smarca5	100	95.511	Oreochromis_niloticus
ENSFHEG00000007687	smarca5	93	84.774	ENSOANG00000002862	SMARCA1	99	84.774	Ornithorhynchus_anatinus
ENSFHEG00000007687	smarca5	94	83.181	ENSOCUG00000001047	SMARCA1	93	83.503	Oryctolagus_cuniculus
ENSFHEG00000007687	smarca5	100	94.742	ENSORLG00000021998	smarca5	100	94.662	Oryzias_latipes
ENSFHEG00000007687	smarca5	100	94.742	ENSORLG00020017679	smarca5	100	94.847	Oryzias_latipes_hni
ENSFHEG00000007687	smarca5	100	94.455	ENSORLG00015017210	smarca5	100	94.842	Oryzias_latipes_hsok
ENSFHEG00000007687	smarca5	100	94.551	ENSOMEG00000000086	smarca5	100	94.646	Oryzias_melastigma
ENSFHEG00000007687	smarca5	91	84.544	ENSOGAG00000004399	SMARCA1	91	83.874	Otolemur_garnettii
ENSFHEG00000007687	smarca5	91	85.380	ENSOARG00000014638	SMARCA1	99	83.333	Ovis_aries
ENSFHEG00000007687	smarca5	94	82.828	ENSPPAG00000034647	SMARCA1	99	79.103	Pan_paniscus
ENSFHEG00000007687	smarca5	94	83.030	ENSPPRG00000008929	SMARCA1	93	83.605	Panthera_pardus
ENSFHEG00000007687	smarca5	94	81.132	ENSPTIG00000000915	SMARCA1	96	81.682	Panthera_tigris_altaica
ENSFHEG00000007687	smarca5	94	82.828	ENSPTRG00000049876	SMARCA1	99	78.208	Pan_troglodytes
ENSFHEG00000007687	smarca5	94	82.828	ENSPANG00000003871	SMARCA1	99	79.103	Papio_anubis
ENSFHEG00000007687	smarca5	94	81.994	ENSPKIG00000013411	smarca1	99	81.994	Paramormyrops_kingsleyae
ENSFHEG00000007687	smarca5	93	84.362	ENSPSIG00000010101	SMARCA1	99	84.362	Pelodiscus_sinensis
ENSFHEG00000007687	smarca5	91	84.912	ENSPEMG00000017503	Smarca1	91	82.827	Peromyscus_maniculatus_bairdii
ENSFHEG00000007687	smarca5	94	84.318	ENSPCIG00000015460	SMARCA1	96	84.318	Phascolarctos_cinereus
ENSFHEG00000007687	smarca5	100	97.419	ENSPFOG00000007649	smarca5	100	97.419	Poecilia_formosa
ENSFHEG00000007687	smarca5	100	97.419	ENSPLAG00000003363	smarca5	100	97.419	Poecilia_latipinna
ENSFHEG00000007687	smarca5	100	97.323	ENSPMEG00000019849	smarca5	100	97.323	Poecilia_mexicana
ENSFHEG00000007687	smarca5	100	97.228	ENSPREG00000023250	smarca5	100	97.228	Poecilia_reticulata
ENSFHEG00000007687	smarca5	94	80.000	ENSPPYG00000020703	SMARCA1	99	76.431	Pongo_abelii
ENSFHEG00000007687	smarca5	74	76.502	ENSPCOG00000020722	SMARCA1	94	80.030	Propithecus_coquereli
ENSFHEG00000007687	smarca5	86	83.355	ENSPVAG00000003805	SMARCA1	89	83.443	Pteropus_vampyrus
ENSFHEG00000007687	smarca5	58	98.421	ENSPNYG00000012299	smarca5	93	98.421	Pundamilia_nyererei
ENSFHEG00000007687	smarca5	94	81.818	ENSRNOG00000003762	Smarca1	93	82.383	Rattus_norvegicus
ENSFHEG00000007687	smarca5	94	82.929	ENSRROG00000034167	SMARCA1	99	79.198	Rhinopithecus_roxellana
ENSFHEG00000007687	smarca5	93	83.538	ENSSBOG00000020641	SMARCA1	99	83.538	Saimiri_boliviensis_boliviensis
ENSFHEG00000007687	smarca5	91	81.776	ENSSHAG00000013518	SMARCA1	99	79.527	Sarcophilus_harrisii
ENSFHEG00000007687	smarca5	94	84.350	ENSSFOG00015009043	smarca1	96	84.521	Scleropages_formosus
ENSFHEG00000007687	smarca5	97	89.892	ENSSFOG00015016794	smarca5	100	92.680	Scleropages_formosus
ENSFHEG00000007687	smarca5	100	94.264	ENSSMAG00000004801	smarca5	100	94.359	Scophthalmus_maximus
ENSFHEG00000007687	smarca5	100	94.455	ENSSDUG00000020690	smarca5	100	94.933	Seriola_dumerili
ENSFHEG00000007687	smarca5	100	94.455	ENSSLDG00000025190	smarca5	100	94.933	Seriola_lalandi_dorsalis
ENSFHEG00000007687	smarca5	83	85.053	ENSSARG00000000842	SMARCA1	81	85.053	Sorex_araneus
ENSFHEG00000007687	smarca5	91	85.714	ENSSPUG00000000590	SMARCA1	98	81.097	Sphenodon_punctatus
ENSFHEG00000007687	smarca5	100	95.415	ENSSPAG00000002894	smarca5	100	95.415	Stegastes_partitus
ENSFHEG00000007687	smarca5	91	85.497	ENSSSCG00000012649	SMARCA1	99	80.272	Sus_scrofa
ENSFHEG00000007687	smarca5	94	83.605	ENSTGUG00000003899	-	99	83.605	Taeniopygia_guttata
ENSFHEG00000007687	smarca5	100	93.977	ENSTRUG00000014094	smarca5	100	94.455	Takifugu_rubripes
ENSFHEG00000007687	smarca5	97	95.054	ENSTNIG00000017717	smarca5	97	95.054	Tetraodon_nigroviridis
ENSFHEG00000007687	smarca5	91	82.814	ENSTBEG00000014973	SMARCA1	89	82.751	Tupaia_belangeri
ENSFHEG00000007687	smarca5	91	80.854	ENSTTRG00000006168	SMARCA1	96	80.336	Tursiops_truncatus
ENSFHEG00000007687	smarca5	94	82.727	ENSUAMG00000020201	SMARCA1	93	83.299	Ursus_americanus
ENSFHEG00000007687	smarca5	96	77.668	ENSUMAG00000004073	SMARCA1	96	85.575	Ursus_maritimus
ENSFHEG00000007687	smarca5	73	86.513	ENSVPAG00000010492	-	77	87.197	Vicugna_pacos
ENSFHEG00000007687	smarca5	94	83.030	ENSVVUG00000008878	SMARCA1	98	84.984	Vulpes_vulpes
ENSFHEG00000007687	smarca5	94	83.927	ENSXETG00000001526	smarca1	98	84.254	Xenopus_tropicalis
ENSFHEG00000007687	smarca5	96	98.810	ENSXCOG00000011170	smarca5	100	98.810	Xiphophorus_couchianus
ENSFHEG00000007687	smarca5	100	97.419	ENSXMAG00000009678	smarca5	100	97.419	Xiphophorus_maculatus