EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000008380 (Gene tree)
Gene ID: 105937181
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 17082 bases
Position: chrKN811501.1:548084-565165
Accession: 105937181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000025891	ResIII	PF04851.15	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000004077	SMARCAL1-201	3849	XM_012878366	ENSFHEP00000025891	889 (aa)	XP_012733820	UPI000644A556

Gene Model

Click here to download ENSFHEG00000008380's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000008380's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000008380	SMARCAL1	96	50.431	ENSG00000138375	SMARCAL1	99	62.112	Homo_sapiens
ENSFHEG00000008380	SMARCAL1	99	76.316	ENSAPOG00000020156	SMARCAL1	99	76.316	Acanthochromis_polyacanthus
ENSFHEG00000008380	SMARCAL1	93	82.421	ENSACIG00000001500	smarcal1	97	82.421	Amphilophus_citrinellus
ENSFHEG00000008380	SMARCAL1	97	75.648	ENSAOCG00000014266	SMARCAL1	99	76.325	Amphiprion_ocellaris
ENSFHEG00000008380	SMARCAL1	99	74.890	ENSAPEG00000015861	SMARCAL1	99	81.496	Amphiprion_percula
ENSFHEG00000008380	SMARCAL1	100	75.435	ENSATEG00000020624	SMARCAL1	100	74.540	Anabas_testudineus
ENSFHEG00000008380	SMARCAL1	94	53.297	ENSAPLG00000009864	SMARCAL1	73	62.235	Anas_platyrhynchos
ENSFHEG00000008380	SMARCAL1	100	51.116	ENSACAG00000004612	SMARCAL1	99	61.080	Anolis_carolinensis
ENSFHEG00000008380	SMARCAL1	99	74.667	ENSACLG00000015990	SMARCAL1	99	74.667	Astatotilapia_calliptera
ENSFHEG00000008380	SMARCAL1	100	65.338	ENSAMXG00000003350	smarcal1	99	64.823	Astyanax_mexicanus
ENSFHEG00000008380	SMARCAL1	96	61.295	ENSCPBG00000013599	SMARCAL1	73	62.813	Chrysemys_picta_bellii
ENSFHEG00000008380	SMARCAL1	72	48.750	ENSCING00000009308	-	100	48.750	Ciona_intestinalis
ENSFHEG00000008380	SMARCAL1	97	69.335	ENSCSEG00000010785	SMARCAL1	99	69.560	Cynoglossus_semilaevis
ENSFHEG00000008380	SMARCAL1	100	82.235	ENSCVAG00000018780	SMARCAL1	100	82.235	Cyprinodon_variegatus
ENSFHEG00000008380	SMARCAL1	78	47.441	ENSEBUG00000011906	SMARCAL1	99	47.149	Eptatretus_burgeri
ENSFHEG00000008380	SMARCAL1	97	71.623	ENSELUG00000010440	-	95	70.588	Esox_lucius
ENSFHEG00000008380	SMARCAL1	82	60.982	ENSFALG00000003981	SMARCAL1	82	63.490	Ficedula_albicollis
ENSFHEG00000008380	SMARCAL1	64	72.813	ENSGMOG00000010034	smarcal1	90	72.813	Gadus_morhua
ENSFHEG00000008380	SMARCAL1	96	51.974	ENSGALG00000011475	RPL37A	82	62.115	Gallus_gallus
ENSFHEG00000008380	SMARCAL1	87	80.899	ENSGACG00000006073	SMARCAL1	100	83.613	Gasterosteus_aculeatus
ENSFHEG00000008380	SMARCAL1	93	53.057	ENSGAGG00000015660	SMARCAL1	70	64.715	Gopherus_agassizii
ENSFHEG00000008380	SMARCAL1	99	74.333	ENSHBUG00000002973	smarcal1	99	74.333	Haplochromis_burtoni
ENSFHEG00000008380	SMARCAL1	95	71.864	ENSHCOG00000017921	smarcal1	98	71.864	Hippocampus_comes
ENSFHEG00000008380	SMARCAL1	97	76.087	ENSKMAG00000012023	SMARCAL1	99	76.087	Kryptolebias_marmoratus
ENSFHEG00000008380	SMARCAL1	90	73.419	ENSLBEG00000003493	smarcal1	100	73.653	Labrus_bergylta
ENSFHEG00000008380	SMARCAL1	93	72.410	ENSLBEG00000022915	smarcal1	100	72.410	Labrus_bergylta
ENSFHEG00000008380	SMARCAL1	88	55.076	ENSLACG00000010974	SMARCAL1	78	55.425	Latimeria_chalumnae
ENSFHEG00000008380	SMARCAL1	93	61.814	ENSLOCG00000009637	smarcal1	99	61.144	Lepisosteus_oculatus
ENSFHEG00000008380	SMARCAL1	97	74.688	ENSMAMG00000000828	SMARCAL1	100	73.962	Mastacembelus_armatus
ENSFHEG00000008380	SMARCAL1	99	74.556	ENSMZEG00005007660	SMARCAL1	99	74.556	Maylandia_zebra
ENSFHEG00000008380	SMARCAL1	96	53.282	ENSMGAG00000011658	SMARCAL1	96	52.928	Meleagris_gallopavo
ENSFHEG00000008380	SMARCAL1	93	69.502	ENSMMOG00000003842	smarcal1	94	69.502	Mola_mola
ENSFHEG00000008380	SMARCAL1	99	51.187	ENSMODG00000015544	SMARCAL1	75	59.474	Monodelphis_domestica
ENSFHEG00000008380	SMARCAL1	93	81.766	ENSNBRG00000016273	smarcal1	97	81.766	Neolamprologus_brichardi
ENSFHEG00000008380	SMARCAL1	91	51.653	ENSMEUG00000004395	SMARCAL1	73	62.928	Notamacropus_eugenii
ENSFHEG00000008380	SMARCAL1	99	74.806	ENSONIG00000009036	smarcal1	100	82.602	Oreochromis_niloticus
ENSFHEG00000008380	SMARCAL1	100	71.538	ENSORLG00000016455	SMARCAL1	100	71.538	Oryzias_latipes
ENSFHEG00000008380	SMARCAL1	100	71.758	ENSORLG00020001610	SMARCAL1	100	71.758	Oryzias_latipes_hni
ENSFHEG00000008380	SMARCAL1	100	72.088	ENSORLG00015001865	SMARCAL1	100	72.088	Oryzias_latipes_hsok
ENSFHEG00000008380	SMARCAL1	100	73.460	ENSOMEG00000001845	smarcal1	100	73.043	Oryzias_melastigma
ENSFHEG00000008380	SMARCAL1	100	69.613	ENSPMGG00000019092	SMARCAL1	100	69.613	Periophthalmus_magnuspinnatus
ENSFHEG00000008380	SMARCAL1	99	49.589	ENSPCIG00000022514	SMARCAL1	72	61.103	Phascolarctos_cinereus
ENSFHEG00000008380	SMARCAL1	100	83.278	ENSPFOG00000000560	SMARCAL1	100	82.720	Poecilia_formosa
ENSFHEG00000008380	SMARCAL1	100	83.166	ENSPMEG00000018146	SMARCAL1	100	82.609	Poecilia_mexicana
ENSFHEG00000008380	SMARCAL1	67	81.076	ENSPREG00000009591	SMARCAL1	97	87.963	Poecilia_reticulata
ENSFHEG00000008380	SMARCAL1	100	65.440	ENSPNAG00000014900	smarcal1	95	65.290	Pygocentrus_nattereri
ENSFHEG00000008380	SMARCAL1	99	49.142	ENSSHAG00000013538	SMARCAL1	79	55.846	Sarcophilus_harrisii
ENSFHEG00000008380	SMARCAL1	100	71.935	ENSSMAG00000010427	SMARCAL1	100	71.935	Scophthalmus_maximus
ENSFHEG00000008380	SMARCAL1	97	76.768	ENSSDUG00000017470	SMARCAL1	95	76.768	Seriola_dumerili
ENSFHEG00000008380	SMARCAL1	100	75.734	ENSSLDG00000007224	SMARCAL1	100	75.734	Seriola_lalandi_dorsalis
ENSFHEG00000008380	SMARCAL1	86	63.661	ENSSPUG00000015369	SMARCAL1	72	64.256	Sphenodon_punctatus
ENSFHEG00000008380	SMARCAL1	93	75.699	ENSSPAG00000003742	smarcal1	99	75.995	Stegastes_partitus
ENSFHEG00000008380	SMARCAL1	78	55.347	ENSSSCG00000035501	SMARCAL1	75	56.515	Sus_scrofa
ENSFHEG00000008380	SMARCAL1	77	61.674	ENSTGUG00000005079	SMARCAL1	99	61.674	Taeniopygia_guttata
ENSFHEG00000008380	SMARCAL1	97	65.252	ENSTRUG00000010701	SMARCAL1	98	64.213	Takifugu_rubripes
ENSFHEG00000008380	SMARCAL1	99	43.280	ENSTTRG00000009001	SMARCAL1	99	43.280	Tursiops_truncatus
ENSFHEG00000008380	SMARCAL1	78	66.000	ENSXETG00000000465	smarcal1	74	65.330	Xenopus_tropicalis