EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000010418 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 4514 bases
Position: chrKN811310.1:4293094-4297607
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000027100	Smg4_UPF3	PF03467.15	1.2e-40	1	1
ENSFHEP00000009126	Smg4_UPF3	PF03467.15	2.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000000997	-	477	-	ENSFHEP00000009126	158 (aa)	-	-
ENSFHET00000001008	-	555	-	ENSFHEP00000027100	184 (aa)	-	-

Gene Model

Click here to download ENSFHEG00000010418's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000010418's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000010418	upf3a	79	61.379	ENSG00000125351	UPF3B	61	60.135	Homo_sapiens
ENSFHEG00000010418	upf3a	95	54.301	ENSG00000169062	UPF3A	98	41.748	Homo_sapiens
ENSFHEG00000010418	upf3a	84	86.364	ENSACIG00000020468	upf3a	94	75.714	Amphilophus_citrinellus
ENSFHEG00000010418	upf3a	79	61.379	ENSANAG00000021894	-	62	60.135	Aotus_nancymaae
ENSFHEG00000010418	upf3a	81	65.772	ENSBTAG00000047365	-	62	64.474	Bos_taurus
ENSFHEG00000010418	upf3a	79	61.379	ENSCJAG00000004975	UPF3B	62	60.135	Callithrix_jacchus
ENSFHEG00000010418	upf3a	79	60.690	ENSTSYG00000014690	UPF3B	55	63.934	Carlito_syrichta
ENSFHEG00000010418	upf3a	79	61.379	ENSCATG00000017506	UPF3B	62	60.135	Cercocebus_atys
ENSFHEG00000010418	upf3a	72	54.472	ENSCLAG00000000093	-	85	54.472	Chinchilla_lanigera
ENSFHEG00000010418	upf3a	72	78.070	ENSCPBG00000022854	-	85	81.250	Chrysemys_picta_bellii
ENSFHEG00000010418	upf3a	69	55.963	ENSCING00000008396	-	74	54.167	Ciona_intestinalis
ENSFHEG00000010418	upf3a	82	67.333	ENSGALG00000016815	-	68	84.615	Gallus_gallus
ENSFHEG00000010418	upf3a	74	68.613	ENSGAGG00000001952	UPF3A	69	68.613	Gopherus_agassizii
ENSFHEG00000010418	upf3a	75	66.187	ENSGGOG00000023995	UPF3B	70	66.187	Gorilla_gorilla
ENSFHEG00000010418	upf3a	84	77.273	ENSHCOG00000013985	upf3a	62	78.808	Hippocampus_comes
ENSFHEG00000010418	upf3a	82	57.558	ENSSTOG00000030282	-	72	57.558	Ictidomys_tridecemlineatus
ENSFHEG00000010418	upf3a	63	74.138	ENSJJAG00000018099	-	62	68.421	Jaculus_jaculus
ENSFHEG00000010418	upf3a	61	59.504	ENSMFAG00000045275	-	59	59.016	Macaca_fascicularis
ENSFHEG00000010418	upf3a	79	61.379	ENSMFAG00000045414	UPF3B	62	60.135	Macaca_fascicularis
ENSFHEG00000010418	upf3a	79	61.379	ENSMMUG00000020222	UPF3B	62	60.135	Macaca_mulatta
ENSFHEG00000010418	upf3a	70	51.095	ENSMMUG00000046682	-	68	51.095	Macaca_mulatta
ENSFHEG00000010418	upf3a	79	61.379	ENSMNEG00000039794	UPF3B	62	60.135	Macaca_nemestrina
ENSFHEG00000010418	upf3a	61	59.504	ENSMNEG00000040898	-	59	59.016	Macaca_nemestrina
ENSFHEG00000010418	upf3a	79	61.379	ENSMLEG00000010999	UPF3B	62	60.135	Mandrillus_leucophaeus
ENSFHEG00000010418	upf3a	53	71.429	ENSMICG00000042420	-	70	59.633	Microcebus_murinus
ENSFHEG00000010418	upf3a	58	93.458	ENSMALG00000002454	-	59	93.458	Monopterus_albus
ENSFHEG00000010418	upf3a	84	62.879	ENSNBRG00000011560	upf3b	96	62.914	Neolamprologus_brichardi
ENSFHEG00000010418	upf3a	75	66.187	ENSNLEG00000014897	UPF3B	74	66.187	Nomascus_leucogenys
ENSFHEG00000010418	upf3a	60	59.091	ENSNLEG00000027516	-	50	59.091	Nomascus_leucogenys
ENSFHEG00000010418	upf3a	67	55.200	ENSODEG00000006064	-	63	55.200	Octodon_degus
ENSFHEG00000010418	upf3a	72	60.902	ENSORLG00020003758	upf3b	53	53.977	Oryzias_latipes_hni
ENSFHEG00000010418	upf3a	75	66.187	ENSPPAG00000040390	UPF3B	70	66.187	Pan_paniscus
ENSFHEG00000010418	upf3a	75	66.187	ENSPTRG00000022228	UPF3B	70	66.187	Pan_troglodytes
ENSFHEG00000010418	upf3a	79	61.379	ENSPANG00000000900	UPF3B	62	60.135	Papio_anubis
ENSFHEG00000010418	upf3a	61	59.504	ENSPANG00000029350	-	59	59.504	Papio_anubis
ENSFHEG00000010418	upf3a	85	63.057	ENSPKIG00000019226	upf3b	96	63.057	Paramormyrops_kingsleyae
ENSFHEG00000010418	upf3a	91	61.582	ENSPCIG00000019590	-	81	56.219	Phascolarctos_cinereus
ENSFHEG00000010418	upf3a	84	94.697	ENSPLAG00000011960	upf3a	76	94.697	Poecilia_latipinna
ENSFHEG00000010418	upf3a	84	93.939	ENSPREG00000005566	upf3a	88	94.040	Poecilia_reticulata
ENSFHEG00000010418	upf3a	55	78.161	ENSPREG00000012214	upf3b	95	62.252	Poecilia_reticulata
ENSFHEG00000010418	upf3a	79	61.379	ENSRROG00000041031	UPF3B	62	60.135	Rhinopithecus_roxellana
ENSFHEG00000010418	upf3a	79	61.379	ENSSBOG00000019740	UPF3B	62	61.379	Saimiri_boliviensis_boliviensis
ENSFHEG00000010418	upf3a	97	66.146	ENSSMAG00000003858	upf3a	97	74.194	Scophthalmus_maximus
ENSFHEG00000010418	upf3a	84	87.879	ENSSDUG00000009680	upf3a	91	88.514	Seriola_dumerili
ENSFHEG00000010418	upf3a	79	61.379	ENSVVUG00000011594	UPF3B	62	60.135	Vulpes_vulpes
ENSFHEG00000010418	upf3a	77	63.121	ENSXETG00000007440	upf3b	56	64.138	Xenopus_tropicalis
ENSFHEG00000010418	upf3a	55	79.310	ENSXCOG00000016586	upf3b	95	62.252	Xiphophorus_couchianus