EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000011239 (Gene tree)
Gene ID: 105924918
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 18450 bases
Position: chrKN805557.1:565190-583639
Accession: 105924918
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000009960	MMR_HSR1	PF01926.23	1.8e-08	1	1
ENSFHEP00000009945	MMR_HSR1	PF01926.23	1.9e-08	1	1
ENSFHEP00000027618	MMR_HSR1	PF01926.23	1.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000016489	-	1392	-	ENSFHEP00000027618	463 (aa)	-	-
ENSFHET00000016531	-	1760	XM_012860699	ENSFHEP00000009945	470 (aa)	XP_012716153	UPI0006449975
ENSFHET00000016541	-	1796	XM_012860692	ENSFHEP00000009960	482 (aa)	XP_012716146	A0A147B3N7

Gene Model

Click here to download ENSFHEG00000011239's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000011239's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000011239	srl	88	32.187	ENSFHEG00000002690	ehd1a	73	32.346
ENSFHEG00000011239	srl	87	33.415	ENSFHEG00000020637	ehd2b	73	33.415
ENSFHEG00000011239	srl	100	73.967	ENSFHEG00000011854	SRL	98	77.828
ENSFHEG00000011239	srl	80	34.316	ENSFHEG00000018572	ehd3	70	34.367
ENSFHEG00000011239	srl	85	32.061	ENSFHEG00000002126	-	69	32.061

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000011239	srl	95	82.579	ENSG00000185739	SRL	99	82.791	Homo_sapiens
ENSFHEG00000011239	srl	96	77.201	ENSAPOG00000012432	SRL	99	77.201	Acanthochromis_polyacanthus
ENSFHEG00000011239	srl	100	94.480	ENSAPOG00000018093	srl	100	94.480	Acanthochromis_polyacanthus
ENSFHEG00000011239	srl	97	80.568	ENSAMEG00000010862	SRL	50	82.353	Ailuropoda_melanoleuca
ENSFHEG00000011239	srl	97	75.446	ENSACIG00000015419	SRL	99	75.446	Amphilophus_citrinellus
ENSFHEG00000011239	srl	97	95.312	ENSACIG00000015799	srl	99	95.312	Amphilophus_citrinellus
ENSFHEG00000011239	srl	94	95.622	ENSAOCG00000007574	srl	100	95.622	Amphiprion_ocellaris
ENSFHEG00000011239	srl	96	77.477	ENSAOCG00000017049	SRL	97	77.703	Amphiprion_ocellaris
ENSFHEG00000011239	srl	100	94.824	ENSAPEG00000006911	srl	100	94.824	Amphiprion_percula
ENSFHEG00000011239	srl	96	74.041	ENSAPEG00000006533	SRL	96	74.550	Amphiprion_percula
ENSFHEG00000011239	srl	100	94.824	ENSATEG00000024315	srl	100	94.824	Anabas_testudineus
ENSFHEG00000011239	srl	96	76.096	ENSATEG00000009643	SRL	52	76.316	Anabas_testudineus
ENSFHEG00000011239	srl	100	79.918	ENSACAG00000016380	SRL	89	80.943	Anolis_carolinensis
ENSFHEG00000011239	srl	96	75.439	ENSACLG00000024674	SRL	58	74.730	Astatotilapia_calliptera
ENSFHEG00000011239	srl	100	94.617	ENSACLG00000027685	srl	100	94.617	Astatotilapia_calliptera
ENSFHEG00000011239	srl	91	78.095	ENSAMXG00000038693	SRL	100	74.172	Astyanax_mexicanus
ENSFHEG00000011239	srl	100	89.419	ENSAMXG00000018789	srl	92	89.419	Astyanax_mexicanus
ENSFHEG00000011239	srl	95	82.993	ENSBTAG00000001078	SRL	56	82.993	Bos_taurus
ENSFHEG00000011239	srl	95	82.579	ENSCJAG00000019750	SRL	100	79.915	Callithrix_jacchus
ENSFHEG00000011239	srl	98	80.568	ENSCAFG00000019233	SRL	85	80.568	Canis_familiaris
ENSFHEG00000011239	srl	98	80.217	ENSCAFG00020025024	SRL	56	81.236	Canis_lupus_dingo
ENSFHEG00000011239	srl	99	79.443	ENSCHIG00000017927	SRL	55	82.993	Capra_hircus
ENSFHEG00000011239	srl	100	79.579	ENSTSYG00000007919	SRL	99	83.488	Carlito_syrichta
ENSFHEG00000011239	srl	97	81.278	ENSCPOG00000012643	SRL	100	79.873	Cavia_porcellus
ENSFHEG00000011239	srl	95	77.828	ENSCCAG00000032646	SRL	100	84.697	Cebus_capucinus
ENSFHEG00000011239	srl	98	80.087	ENSCATG00000032227	-	100	79.915	Cercocebus_atys
ENSFHEG00000011239	srl	97	81.498	ENSCLAG00000016242	SRL	100	80.085	Chinchilla_lanigera
ENSFHEG00000011239	srl	83	86.234	ENSCHOG00000001618	SRL	52	86.234	Choloepus_hoffmanni
ENSFHEG00000011239	srl	97	86.010	ENSCPBG00000026371	SRL	99	80.124	Chrysemys_picta_bellii
ENSFHEG00000011239	srl	94	57.991	ENSCING00000005231	-	98	57.991	Ciona_intestinalis
ENSFHEG00000011239	srl	95	82.579	ENSCANG00000035872	SRL	99	82.791	Colobus_angolensis_palliatus
ENSFHEG00000011239	srl	97	82.159	ENSCGRG00001016630	Srl	100	80.720	Cricetulus_griseus_chok1gshd
ENSFHEG00000011239	srl	97	82.159	ENSCGRG00000005458	Srl	100	80.720	Cricetulus_griseus_crigri
ENSFHEG00000011239	srl	99	72.903	ENSCSEG00000011866	SRL	89	75.450	Cynoglossus_semilaevis
ENSFHEG00000011239	srl	100	93.617	ENSCSEG00000016151	srl	100	93.617	Cynoglossus_semilaevis
ENSFHEG00000011239	srl	100	97.095	ENSCVAG00000003513	srl	100	97.095	Cyprinodon_variegatus
ENSFHEG00000011239	srl	98	75.431	ENSCVAG00000022465	SRL	61	76.139	Cyprinodon_variegatus
ENSFHEG00000011239	srl	82	78.646	ENSDARG00000112959	CABZ01072309.1	100	78.646	Danio_rerio
ENSFHEG00000011239	srl	100	90.062	ENSDARG00000104587	srl	100	90.062	Danio_rerio
ENSFHEG00000011239	srl	95	82.805	ENSDNOG00000011643	SRL	53	82.805	Dasypus_novemcinctus
ENSFHEG00000011239	srl	97	82.159	ENSDORG00000014807	Srl	100	80.508	Dipodomys_ordii
ENSFHEG00000011239	srl	80	65.508	ENSEBUG00000015937	srl	94	65.508	Eptatretus_burgeri
ENSFHEG00000011239	srl	95	82.993	ENSEASG00005000942	SRL	53	82.993	Equus_asinus_asinus
ENSFHEG00000011239	srl	98	80.963	ENSECAG00000024219	SRL	99	79.873	Equus_caballus
ENSFHEG00000011239	srl	100	86.037	ENSELUG00000015616	srl	100	86.037	Esox_lucius
ENSFHEG00000011239	srl	100	78.858	ENSFCAG00000022075	SRL	100	79.281	Felis_catus
ENSFHEG00000011239	srl	99	80.260	ENSFALG00000004328	SRL	63	83.182	Ficedula_albicollis
ENSFHEG00000011239	srl	97	81.978	ENSFDAG00000006199	SRL	100	80.932	Fukomys_damarensis
ENSFHEG00000011239	srl	94	91.410	ENSGMOG00000014954	srl	100	91.410	Gadus_morhua
ENSFHEG00000011239	srl	98	81.210	ENSGALG00000038884	SRL	99	80.679	Gallus_gallus
ENSFHEG00000011239	srl	100	97.303	ENSGAFG00000000010	srl	100	97.303	Gambusia_affinis
ENSFHEG00000011239	srl	97	78.125	ENSGAFG00000016984	SRL	99	78.125	Gambusia_affinis
ENSFHEG00000011239	srl	94	94.945	ENSGACG00000011332	srl	100	94.945	Gasterosteus_aculeatus
ENSFHEG00000011239	srl	95	82.579	ENSGGOG00000011312	-	100	79.493	Gorilla_gorilla
ENSFHEG00000011239	srl	96	75.877	ENSHBUG00000015710	SRL	57	75.877	Haplochromis_burtoni
ENSFHEG00000011239	srl	100	94.617	ENSHBUG00000007581	srl	100	94.617	Haplochromis_burtoni
ENSFHEG00000011239	srl	97	81.938	ENSHGLG00000015271	SRL	100	80.508	Heterocephalus_glaber_female
ENSFHEG00000011239	srl	97	81.938	ENSHGLG00100019378	SRL	100	80.508	Heterocephalus_glaber_male
ENSFHEG00000011239	srl	96	74.505	ENSHCOG00000001012	SRL	50	74.505	Hippocampus_comes
ENSFHEG00000011239	srl	100	93.432	ENSHCOG00000008687	srl	99	94.866	Hippocampus_comes
ENSFHEG00000011239	srl	94	70.183	ENSIPUG00000011609	SRL	95	70.183	Ictalurus_punctatus
ENSFHEG00000011239	srl	100	89.441	ENSIPUG00000012513	srl	100	89.441	Ictalurus_punctatus
ENSFHEG00000011239	srl	95	83.258	ENSSTOG00000021151	-	100	80.085	Ictidomys_tridecemlineatus
ENSFHEG00000011239	srl	100	81.144	ENSJJAG00000016400	Srl	100	81.144	Jaculus_jaculus
ENSFHEG00000011239	srl	98	95.339	ENSKMAG00000014115	srl	95	95.339	Kryptolebias_marmoratus
ENSFHEG00000011239	srl	95	77.324	ENSKMAG00000019537	SRL	100	77.324	Kryptolebias_marmoratus
ENSFHEG00000011239	srl	95	76.018	ENSLBEG00000013811	SRL	95	76.244	Labrus_bergylta
ENSFHEG00000011239	srl	100	93.631	ENSLBEG00000026643	srl	100	93.631	Labrus_bergylta
ENSFHEG00000011239	srl	100	82.609	ENSLACG00000002825	SRL	100	84.071	Latimeria_chalumnae
ENSFHEG00000011239	srl	99	86.081	ENSLOCG00000002644	srl	94	88.939	Lepisosteus_oculatus
ENSFHEG00000011239	srl	97	80.702	ENSLAFG00000006329	SRL	52	81.015	Loxodonta_africana
ENSFHEG00000011239	srl	93	82.791	ENSMFAG00000037383	SRL	99	82.791	Macaca_fascicularis
ENSFHEG00000011239	srl	98	79.870	ENSMNEG00000019236	-	93	82.579	Macaca_nemestrina
ENSFHEG00000011239	srl	95	76.244	ENSMLEG00000032156	SRL	100	73.996	Mandrillus_leucophaeus
ENSFHEG00000011239	srl	95	75.551	ENSMAMG00000013756	SRL	53	75.551	Mastacembelus_armatus
ENSFHEG00000011239	srl	96	95.270	ENSMAMG00000023322	srl	96	94.690	Mastacembelus_armatus
ENSFHEG00000011239	srl	100	94.617	ENSMZEG00005004548	srl	100	94.617	Maylandia_zebra
ENSFHEG00000011239	srl	96	75.658	ENSMZEG00005004010	SRL	57	75.658	Maylandia_zebra
ENSFHEG00000011239	srl	95	83.182	ENSMGAG00000009342	SRL	96	83.641	Meleagris_gallopavo
ENSFHEG00000011239	srl	96	82.844	ENSMICG00000032307	SRL	100	80.338	Microcebus_murinus
ENSFHEG00000011239	srl	100	79.873	ENSMOCG00000008208	Srl	100	79.873	Microtus_ochrogaster
ENSFHEG00000011239	srl	95	74.066	ENSMMOG00000021572	SRL	99	74.286	Mola_mola
ENSFHEG00000011239	srl	97	94.196	ENSMMOG00000013970	srl	100	94.000	Mola_mola
ENSFHEG00000011239	srl	97	82.561	ENSMODG00000016380	-	50	83.900	Monodelphis_domestica
ENSFHEG00000011239	srl	90	77.804	ENSMALG00000000670	SRL	98	77.804	Monopterus_albus
ENSFHEG00000011239	srl	100	93.617	ENSMALG00000005039	srl	100	93.617	Monopterus_albus
ENSFHEG00000011239	srl	97	82.819	MGP_CAROLIEiJ_G0020400	Srl	100	81.780	Mus_caroli
ENSFHEG00000011239	srl	97	82.819	ENSMUSG00000022519	Srl	100	81.780	Mus_musculus
ENSFHEG00000011239	srl	97	82.819	MGP_SPRETEiJ_G0021294	Srl	100	81.780	Mus_spretus
ENSFHEG00000011239	srl	95	82.353	ENSMPUG00000015025	SRL	54	82.353	Mustela_putorius_furo
ENSFHEG00000011239	srl	98	81.223	ENSMLUG00000030733	SRL	56	83.258	Myotis_lucifugus
ENSFHEG00000011239	srl	97	82.599	ENSNGAG00000019741	Srl	100	81.144	Nannospalax_galili
ENSFHEG00000011239	srl	100	94.692	ENSNBRG00000023775	srl	100	94.692	Neolamprologus_brichardi
ENSFHEG00000011239	srl	96	75.219	ENSNBRG00000002422	SRL	56	76.620	Neolamprologus_brichardi
ENSFHEG00000011239	srl	95	77.602	ENSNLEG00000029051	SRL	100	74.841	Nomascus_leucogenys
ENSFHEG00000011239	srl	95	77.602	ENSOPRG00000000477	-	52	77.602	Ochotona_princeps
ENSFHEG00000011239	srl	97	81.938	ENSODEG00000013256	SRL	100	80.297	Octodon_degus
ENSFHEG00000011239	srl	100	94.617	ENSONIG00000005192	srl	100	94.617	Oreochromis_niloticus
ENSFHEG00000011239	srl	95	82.353	ENSOCUG00000025140	SRL	50	80.744	Oryctolagus_cuniculus
ENSFHEG00000011239	srl	100	95.436	ENSORLG00000008291	srl	97	95.436	Oryzias_latipes
ENSFHEG00000011239	srl	96	75.621	ENSORLG00000015064	SRL	97	75.621	Oryzias_latipes
ENSFHEG00000011239	srl	96	75.847	ENSORLG00020018173	SRL	97	75.847	Oryzias_latipes_hni
ENSFHEG00000011239	srl	100	95.436	ENSORLG00020019784	srl	85	95.436	Oryzias_latipes_hni
ENSFHEG00000011239	srl	100	95.021	ENSORLG00015009342	srl	97	95.021	Oryzias_latipes_hsok
ENSFHEG00000011239	srl	96	75.847	ENSORLG00015019063	SRL	97	75.847	Oryzias_latipes_hsok
ENSFHEG00000011239	srl	97	73.707	ENSOMEG00000005682	SRL	54	73.662	Oryzias_melastigma
ENSFHEG00000011239	srl	100	95.436	ENSOMEG00000010006	srl	100	95.436	Oryzias_melastigma
ENSFHEG00000011239	srl	96	82.393	ENSOGAG00000029266	SRL	56	80.963	Otolemur_garnettii
ENSFHEG00000011239	srl	97	81.004	ENSOARG00000003074	SRL	55	82.993	Ovis_aries
ENSFHEG00000011239	srl	98	80.303	ENSPPAG00000024919	-	99	82.791	Pan_paniscus
ENSFHEG00000011239	srl	100	78.858	ENSPPRG00000010274	SRL	99	82.558	Panthera_pardus
ENSFHEG00000011239	srl	100	78.858	ENSPTIG00000015162	SRL	99	82.558	Panthera_tigris_altaica
ENSFHEG00000011239	srl	98	80.303	ENSPTRG00000007712	SRL	99	82.791	Pan_troglodytes
ENSFHEG00000011239	srl	97	80.786	ENSPANG00000013804	SRL	95	82.579	Papio_anubis
ENSFHEG00000011239	srl	100	88.683	ENSPKIG00000006405	srl	100	88.683	Paramormyrops_kingsleyae
ENSFHEG00000011239	srl	100	77.282	ENSPKIG00000024974	SRL	94	77.282	Paramormyrops_kingsleyae
ENSFHEG00000011239	srl	95	82.727	ENSPSIG00000008586	SRL	50	81.236	Pelodiscus_sinensis
ENSFHEG00000011239	srl	95	95.249	ENSPMGG00000021081	srl	95	95.249	Periophthalmus_magnuspinnatus
ENSFHEG00000011239	srl	95	75.566	ENSPMGG00000023505	-	99	75.566	Periophthalmus_magnuspinnatus
ENSFHEG00000011239	srl	97	81.718	ENSPEMG00000015842	Srl	100	80.508	Peromyscus_maniculatus_bairdii
ENSFHEG00000011239	srl	91	67.202	ENSPMAG00000004786	srl	99	67.735	Petromyzon_marinus
ENSFHEG00000011239	srl	98	81.579	ENSPCIG00000012128	SRL	99	81.579	Phascolarctos_cinereus
ENSFHEG00000011239	srl	100	97.510	ENSPFOG00000011408	srl	96	96.983	Poecilia_formosa
ENSFHEG00000011239	srl	100	95.248	ENSPLAG00000008017	srl	98	97.556	Poecilia_latipinna
ENSFHEG00000011239	srl	97	76.562	ENSPLAG00000002932	SRL	99	76.562	Poecilia_latipinna
ENSFHEG00000011239	srl	97	75.000	ENSPMEG00000005890	SRL	61	74.730	Poecilia_mexicana
ENSFHEG00000011239	srl	100	97.447	ENSPMEG00000006745	srl	98	97.556	Poecilia_mexicana
ENSFHEG00000011239	srl	97	77.455	ENSPREG00000000315	SRL	99	77.455	Poecilia_reticulata
ENSFHEG00000011239	srl	100	97.510	ENSPREG00000007751	srl	100	97.561	Poecilia_reticulata
ENSFHEG00000011239	srl	90	84.248	ENSPPYG00000007053	SRL	98	84.248	Pongo_abelii
ENSFHEG00000011239	srl	98	81.400	ENSPCAG00000003378	-	50	83.447	Procavia_capensis
ENSFHEG00000011239	srl	96	82.844	ENSPCOG00000023135	SRL	99	83.488	Propithecus_coquereli
ENSFHEG00000011239	srl	97	81.498	ENSPVAG00000006586	SRL	56	81.498	Pteropus_vampyrus
ENSFHEG00000011239	srl	100	94.410	ENSPNYG00000001200	srl	100	94.410	Pundamilia_nyererei
ENSFHEG00000011239	srl	96	75.658	ENSPNYG00000003423	SRL	57	75.658	Pundamilia_nyererei
ENSFHEG00000011239	srl	95	76.417	ENSPNAG00000007361	-	91	76.417	Pygocentrus_nattereri
ENSFHEG00000011239	srl	100	88.382	ENSPNAG00000023106	srl	100	88.382	Pygocentrus_nattereri
ENSFHEG00000011239	srl	95	82.579	ENSSBOG00000029273	SRL	100	79.915	Saimiri_boliviensis_boliviensis
ENSFHEG00000011239	srl	100	88.636	ENSSFOG00015009773	srl	100	88.866	Scleropages_formosus
ENSFHEG00000011239	srl	95	76.923	ENSSFOG00015021327	SRL	50	76.339	Scleropages_formosus
ENSFHEG00000011239	srl	95	75.165	ENSSMAG00000002232	SRL	50	75.165	Scophthalmus_maximus
ENSFHEG00000011239	srl	100	93.206	ENSSMAG00000016274	srl	100	93.418	Scophthalmus_maximus
ENSFHEG00000011239	srl	96	77.556	ENSSDUG00000009161	SRL	99	77.556	Seriola_dumerili
ENSFHEG00000011239	srl	96	96.171	ENSSDUG00000010808	srl	98	96.171	Seriola_dumerili
ENSFHEG00000011239	srl	96	77.293	ENSSLDG00000014601	SRL	100	77.851	Seriola_lalandi_dorsalis
ENSFHEG00000011239	srl	100	94.813	ENSSLDG00000022024	srl	100	94.813	Seriola_lalandi_dorsalis
ENSFHEG00000011239	srl	96	82.287	ENSSPUG00000016859	SRL	99	81.858	Sphenodon_punctatus
ENSFHEG00000011239	srl	100	94.628	ENSSPAG00000019105	srl	100	94.628	Stegastes_partitus
ENSFHEG00000011239	srl	95	78.458	ENSSPAG00000014254	SRL	98	78.458	Stegastes_partitus
ENSFHEG00000011239	srl	95	82.766	ENSSSCG00000007949	SRL	98	82.766	Sus_scrofa
ENSFHEG00000011239	srl	78	86.188	ENSTGUG00000016121	-	100	86.188	Taeniopygia_guttata
ENSFHEG00000011239	srl	95	83.409	ENSTGUG00000003951	-	97	83.409	Taeniopygia_guttata
ENSFHEG00000011239	srl	90	77.566	ENSTRUG00000013310	SRL	55	77.566	Takifugu_rubripes
ENSFHEG00000011239	srl	100	94.468	ENSTRUG00000006005	srl	100	94.468	Takifugu_rubripes
ENSFHEG00000011239	srl	100	93.191	ENSTNIG00000009739	srl	100	93.191	Tetraodon_nigroviridis
ENSFHEG00000011239	srl	95	82.353	ENSUAMG00000005701	SRL	55	82.353	Ursus_americanus
ENSFHEG00000011239	srl	95	82.353	ENSUMAG00000002574	SRL	55	82.353	Ursus_maritimus
ENSFHEG00000011239	srl	97	81.236	ENSVVUG00000016331	-	50	81.236	Vulpes_vulpes
ENSFHEG00000011239	srl	97	81.333	ENSXETG00000017313	srl	100	81.153	Xenopus_tropicalis
ENSFHEG00000011239	srl	97	77.902	ENSXCOG00000014584	SRL	100	77.605	Xiphophorus_couchianus
ENSFHEG00000011239	srl	91	97.387	ENSXCOG00000010424	srl	97	97.387	Xiphophorus_couchianus
ENSFHEG00000011239	srl	100	97.303	ENSXMAG00000004625	srl	95	97.303	Xiphophorus_maculatus
ENSFHEG00000011239	srl	97	75.214	ENSXMAG00000027598	SRL	63	75.378	Xiphophorus_maculatus