EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000012041 (Gene tree)
Gene ID: 105939537
Gene Symbol: si:dkey-34d22.5
Alias: -
Full Name: ras-related protein Rab-39B
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 6074 bases
Position: chrKN811575.1:351606-357679
Accession: 105939537
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000010701	MMR_HSR1	PF01926.23	6.8e-05	1	1
ENSFHEP00000028128	MMR_HSR1	PF01926.23	6.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000017471	-	3572	XM_012881770	ENSFHEP00000028128	223 (aa)	XP_012737224	UPI000644BFB0
ENSFHET00000017474	-	3767	-	ENSFHEP00000010701	223 (aa)	-	UPI000644BFB0

Gene Model

Click here to download ENSFHEG00000012041's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000012041's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000012041	si:dkey-34d22.5	77	42.442	ENSFHEG00000004891	rab35b	98	38.182
ENSFHEG00000012041	si:dkey-34d22.5	65	45.205	ENSFHEG00000018450	RAB14	72	45.205
ENSFHEG00000012041	si:dkey-34d22.5	97	36.406	ENSFHEG00000014414	-	98	36.406
ENSFHEG00000012041	si:dkey-34d22.5	93	37.198	ENSFHEG00000022985	rab1ab	96	37.198
ENSFHEG00000012041	si:dkey-34d22.5	76	41.176	ENSFHEG00000015996	RAB41	77	41.176
ENSFHEG00000012041	si:dkey-34d22.5	78	40.571	ENSFHEG00000022176	zgc:171927	80	40.571
ENSFHEG00000012041	si:dkey-34d22.5	80	35.955	ENSFHEG00000003018	rab25b	84	35.955
ENSFHEG00000012041	si:dkey-34d22.5	74	36.145	ENSFHEG00000012117	rab5c	74	36.145
ENSFHEG00000012041	si:dkey-34d22.5	85	55.789	ENSFHEG00000002885	-	88	55.789
ENSFHEG00000012041	si:dkey-34d22.5	97	35.945	ENSFHEG00000001296	rab2a	99	35.945
ENSFHEG00000012041	si:dkey-34d22.5	73	43.827	ENSFHEG00000014087	RAB15	78	44.048
ENSFHEG00000012041	si:dkey-34d22.5	67	39.073	ENSFHEG00000006820	rab33ba	62	39.073
ENSFHEG00000012041	si:dkey-34d22.5	78	30.899	ENSFHEG00000015993	RAB29	86	30.899
ENSFHEG00000012041	si:dkey-34d22.5	74	32.335	ENSFHEG00000016103	-	78	32.335
ENSFHEG00000012041	si:dkey-34d22.5	77	39.773	ENSFHEG00000021111	rab9a	85	39.773
ENSFHEG00000012041	si:dkey-34d22.5	70	33.758	ENSFHEG00000003799	rheb	84	33.758
ENSFHEG00000012041	si:dkey-34d22.5	80	32.022	ENSFHEG00000006551	rab36	66	32.022
ENSFHEG00000012041	si:dkey-34d22.5	87	37.563	ENSFHEG00000001477	-	74	37.563
ENSFHEG00000012041	si:dkey-34d22.5	92	43.478	ENSFHEG00000000695	-	94	43.478
ENSFHEG00000012041	si:dkey-34d22.5	97	34.862	ENSFHEG00000019668	rab11a	95	34.862
ENSFHEG00000012041	si:dkey-34d22.5	92	35.922	ENSFHEG00000022524	rab6bb	90	35.922
ENSFHEG00000012041	si:dkey-34d22.5	83	35.676	ENSFHEG00000022642	rab11ba	83	35.676
ENSFHEG00000012041	si:dkey-34d22.5	92	38.049	ENSFHEG00000010509	rab4a	94	38.049
ENSFHEG00000012041	si:dkey-34d22.5	69	33.333	ENSFHEG00000009108	kras	98	31.746
ENSFHEG00000012041	si:dkey-34d22.5	71	34.810	ENSFHEG00000010055	hrasb	88	33.918
ENSFHEG00000012041	si:dkey-34d22.5	71	35.443	ENSFHEG00000008212	rhebl1	84	35.443
ENSFHEG00000012041	si:dkey-34d22.5	74	35.542	ENSFHEG00000015268	-	74	35.542
ENSFHEG00000012041	si:dkey-34d22.5	77	38.012	ENSFHEG00000000832	rab11al	80	38.012
ENSFHEG00000012041	si:dkey-34d22.5	74	36.527	ENSFHEG00000012702	rab22a	84	36.527
ENSFHEG00000012041	si:dkey-34d22.5	72	40.373	ENSFHEG00000004319	rab12	64	40.373
ENSFHEG00000012041	si:dkey-34d22.5	75	32.370	ENSFHEG00000003385	rasd4	79	32.370
ENSFHEG00000012041	si:dkey-34d22.5	75	42.515	ENSFHEG00000019455	rab18a	80	42.515
ENSFHEG00000012041	si:dkey-34d22.5	74	35.329	ENSFHEG00000015015	rabl2	60	35.329
ENSFHEG00000012041	si:dkey-34d22.5	85	54.737	ENSFHEG00000020877	RAB39B	88	54.737
ENSFHEG00000012041	si:dkey-34d22.5	75	42.515	ENSFHEG00000013918	rab30	80	42.515
ENSFHEG00000012041	si:dkey-34d22.5	91	34.300	ENSFHEG00000007101	RAB7A	94	34.300
ENSFHEG00000012041	si:dkey-34d22.5	74	39.053	ENSFHEG00000009417	rab9b	75	39.053
ENSFHEG00000012041	si:dkey-34d22.5	95	33.019	ENSFHEG00000004532	rab34b	80	33.019
ENSFHEG00000012041	si:dkey-34d22.5	77	36.842	ENSFHEG00000018353	rab11bb	77	36.842
ENSFHEG00000012041	si:dkey-34d22.5	98	31.222	ENSFHEG00000014186	rab25a	96	31.222
ENSFHEG00000012041	si:dkey-34d22.5	70	36.306	ENSFHEG00000013691	rab34a	60	36.306
ENSFHEG00000012041	si:dkey-34d22.5	74	45.455	ENSFHEG00000009378	rab15	76	45.455
ENSFHEG00000012041	si:dkey-34d22.5	70	38.217	ENSFHEG00000023069	rab23	70	37.278
ENSFHEG00000012041	si:dkey-34d22.5	67	43.333	ENSFHEG00000011483	zgc:101559	63	43.333
ENSFHEG00000012041	si:dkey-34d22.5	75	44.311	ENSFHEG00000020035	rab18b	80	44.311
ENSFHEG00000012041	si:dkey-34d22.5	74	32.143	ENSFHEG00000016504	si:cabz01085950.1	82	32.143
ENSFHEG00000012041	si:dkey-34d22.5	84	37.113	ENSFHEG00000022141	rab33a	80	37.113
ENSFHEG00000012041	si:dkey-34d22.5	77	36.842	ENSFHEG00000022676	-	77	36.842
ENSFHEG00000012041	si:dkey-34d22.5	70	31.410	ENSFHEG00000004875	si:ch73-116o1.2	79	31.548
ENSFHEG00000012041	si:dkey-34d22.5	74	41.420	ENSFHEG00000018764	RAB9A	77	41.420
ENSFHEG00000012041	si:dkey-34d22.5	92	34.450	ENSFHEG00000005588	RAB7A	84	34.450
ENSFHEG00000012041	si:dkey-34d22.5	87	30.583	ENSFHEG00000019684	rasl11a	78	30.583
ENSFHEG00000012041	si:dkey-34d22.5	71	36.646	ENSFHEG00000002502	si:dkey-13a21.4	77	36.646
ENSFHEG00000012041	si:dkey-34d22.5	74	35.542	ENSFHEG00000014070	rab5aa	75	35.542
ENSFHEG00000012041	si:dkey-34d22.5	85	60.000	ENSFHEG00000013106	rab42a	86	60.000
ENSFHEG00000012041	si:dkey-34d22.5	82	40.212	ENSFHEG00000021221	rab13	93	40.212
ENSFHEG00000012041	si:dkey-34d22.5	97	34.562	ENSFHEG00000014924	rab1ba	98	34.562

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000012041	si:dkey-34d22.5	100	84.753	ENSACIG00000016958	si:dkey-34d22.5	100	84.753	Amphilophus_citrinellus
ENSFHEG00000012041	si:dkey-34d22.5	100	84.753	ENSATEG00000010784	si:dkey-34d22.5	86	84.753	Anabas_testudineus
ENSFHEG00000012041	si:dkey-34d22.5	88	63.959	ENSCPBG00000011236	-	90	63.959	Chrysemys_picta_bellii
ENSFHEG00000012041	si:dkey-34d22.5	100	74.439	ENSCSEG00000019183	si:dkey-34d22.5	100	74.439	Cynoglossus_semilaevis
ENSFHEG00000012041	si:dkey-34d22.5	100	93.274	ENSCVAG00000017064	si:dkey-34d22.5	100	93.274	Cyprinodon_variegatus
ENSFHEG00000012041	si:dkey-34d22.5	83	49.730	ENSDARG00000100379	si:dkey-34d22.2	99	49.730	Danio_rerio
ENSFHEG00000012041	si:dkey-34d22.5	91	59.804	ENSFALG00000001373	-	94	59.804	Ficedula_albicollis
ENSFHEG00000012041	si:dkey-34d22.5	97	56.944	ENSGALG00000000994	-	97	56.944	Gallus_gallus
ENSFHEG00000012041	si:dkey-34d22.5	100	92.825	ENSGAFG00000008183	si:dkey-34d22.5	100	92.825	Gambusia_affinis
ENSFHEG00000012041	si:dkey-34d22.5	93	58.173	ENSGAGG00000004918	-	99	58.173	Gopherus_agassizii
ENSFHEG00000012041	si:dkey-34d22.5	99	71.622	ENSHCOG00000015692	si:dkey-34d22.5	99	71.622	Hippocampus_comes
ENSFHEG00000012041	si:dkey-34d22.5	100	88.341	ENSKMAG00000012778	si:dkey-34d22.5	100	88.341	Kryptolebias_marmoratus
ENSFHEG00000012041	si:dkey-34d22.5	99	81.081	ENSLBEG00000002926	si:dkey-34d22.5	100	81.081	Labrus_bergylta
ENSFHEG00000012041	si:dkey-34d22.5	86	64.583	ENSLACG00000012674	si:dkey-34d22.5	90	64.583	Latimeria_chalumnae
ENSFHEG00000012041	si:dkey-34d22.5	98	70.642	ENSLOCG00000003467	si:dkey-34d22.5	98	70.642	Lepisosteus_oculatus
ENSFHEG00000012041	si:dkey-34d22.5	100	79.821	ENSMMOG00000006846	si:dkey-34d22.5	100	79.821	Mola_mola
ENSFHEG00000012041	si:dkey-34d22.5	100	80.269	ENSMALG00000013152	si:dkey-34d22.5	100	80.269	Monopterus_albus
ENSFHEG00000012041	si:dkey-34d22.5	99	85.135	ENSORLG00000014099	si:dkey-34d22.5	99	85.135	Oryzias_latipes
ENSFHEG00000012041	si:dkey-34d22.5	99	84.685	ENSORLG00020020277	si:dkey-34d22.5	99	84.685	Oryzias_latipes_hni
ENSFHEG00000012041	si:dkey-34d22.5	99	84.685	ENSORLG00015000142	si:dkey-34d22.5	99	84.685	Oryzias_latipes_hsok
ENSFHEG00000012041	si:dkey-34d22.5	91	91.089	ENSOMEG00000017958	si:dkey-34d22.5	99	86.486	Oryzias_melastigma
ENSFHEG00000012041	si:dkey-34d22.5	99	73.094	ENSPKIG00000021209	si:dkey-34d22.5	99	73.094	Paramormyrops_kingsleyae
ENSFHEG00000012041	si:dkey-34d22.5	88	63.452	ENSPSIG00000006606	-	97	63.452	Pelodiscus_sinensis
ENSFHEG00000012041	si:dkey-34d22.5	99	81.532	ENSPMGG00000001298	-	99	81.532	Periophthalmus_magnuspinnatus
ENSFHEG00000012041	si:dkey-34d22.5	88	61.421	ENSPCIG00000022399	-	88	61.421	Phascolarctos_cinereus
ENSFHEG00000012041	si:dkey-34d22.5	100	92.825	ENSPFOG00000014499	si:dkey-34d22.5	100	92.825	Poecilia_formosa
ENSFHEG00000012041	si:dkey-34d22.5	100	92.825	ENSPLAG00000007773	si:dkey-34d22.5	100	92.825	Poecilia_latipinna
ENSFHEG00000012041	si:dkey-34d22.5	100	92.825	ENSPMEG00000012932	si:dkey-34d22.5	100	92.825	Poecilia_mexicana
ENSFHEG00000012041	si:dkey-34d22.5	88	60.406	ENSSHAG00000008520	-	88	60.406	Sarcophilus_harrisii
ENSFHEG00000012041	si:dkey-34d22.5	97	67.281	ENSSFOG00015012088	rab42	97	67.281	Scleropages_formosus
ENSFHEG00000012041	si:dkey-34d22.5	100	86.099	ENSSLDG00000002646	si:dkey-34d22.5	100	86.099	Seriola_lalandi_dorsalis
ENSFHEG00000012041	si:dkey-34d22.5	99	88.288	ENSSPAG00000012955	si:dkey-34d22.5	99	88.288	Stegastes_partitus
ENSFHEG00000012041	si:dkey-34d22.5	92	49.515	ENSXETG00000020622	rab39a	98	49.515	Xenopus_tropicalis
ENSFHEG00000012041	si:dkey-34d22.5	100	91.928	ENSXCOG00000008410	si:dkey-34d22.5	100	91.928	Xiphophorus_couchianus
ENSFHEG00000012041	si:dkey-34d22.5	100	91.928	ENSXMAG00000029317	si:dkey-34d22.5	100	91.928	Xiphophorus_maculatus