EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000012334 (Gene tree)
Gene ID: 105919380
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 4568 bases
Position: chrKN805952.1:26289-30856
Accession: 105919380
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000028294	HVSL	PF09749.9	1.8e-59	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000031402	-	1007	XM_012854689	ENSFHEP00000028294	250 (aa)	XP_012710143	A0A146PBE5

Gene Model

Click here to download ENSFHEG00000012334's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000012334's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000012334	usb1	78	52.551	ENSG00000103005	USB1	86	51.266	Homo_sapiens
ENSFHEG00000012334	usb1	97	69.200	ENSAPOG00000011942	usb1	88	67.600	Acanthochromis_polyacanthus
ENSFHEG00000012334	usb1	74	53.763	ENSAMEG00000017205	USB1	80	50.439	Ailuropoda_melanoleuca
ENSFHEG00000012334	usb1	82	67.317	ENSACIG00000012234	usb1	88	62.041	Amphilophus_citrinellus
ENSFHEG00000012334	usb1	98	69.291	ENSAOCG00000014831	usb1	88	68.110	Amphiprion_ocellaris
ENSFHEG00000012334	usb1	98	69.291	ENSAPEG00000000296	usb1	88	68.110	Amphiprion_percula
ENSFHEG00000012334	usb1	98	65.863	ENSATEG00000009348	usb1	88	66.265	Anabas_testudineus
ENSFHEG00000012334	usb1	76	55.208	ENSAPLG00000002756	USB1	85	54.688	Anas_platyrhynchos
ENSFHEG00000012334	usb1	77	52.308	ENSACAG00000015481	USB1	85	51.282	Anolis_carolinensis
ENSFHEG00000012334	usb1	78	52.041	ENSANAG00000035640	USB1	92	43.827	Aotus_nancymaae
ENSFHEG00000012334	usb1	88	66.818	ENSACLG00000020586	usb1	88	63.492	Astatotilapia_calliptera
ENSFHEG00000012334	usb1	77	63.918	ENSAMXG00000040146	usb1	85	54.615	Astyanax_mexicanus
ENSFHEG00000012334	usb1	96	47.737	ENSBTAG00000015758	USB1	85	47.325	Bos_taurus
ENSFHEG00000012334	usb1	78	53.061	ENSCJAG00000011733	USB1	92	45.062	Callithrix_jacchus
ENSFHEG00000012334	usb1	80	50.249	ENSCAFG00000008556	USB1	63	46.311	Canis_familiaris
ENSFHEG00000012334	usb1	96	47.521	ENSCAFG00020009263	USB1	85	47.107	Canis_lupus_dingo
ENSFHEG00000012334	usb1	96	47.325	ENSCHIG00000024290	USB1	85	47.325	Capra_hircus
ENSFHEG00000012334	usb1	77	52.062	ENSTSYG00000006997	USB1	92	43.827	Carlito_syrichta
ENSFHEG00000012334	usb1	76	42.932	ENSCAPG00000009057	USB1	78	41.885	Cavia_aperea
ENSFHEG00000012334	usb1	96	48.347	ENSCPOG00000014325	USB1	85	47.521	Cavia_porcellus
ENSFHEG00000012334	usb1	78	52.551	ENSCCAG00000022132	USB1	89	44.937	Cebus_capucinus
ENSFHEG00000012334	usb1	78	53.061	ENSCATG00000032174	USB1	92	45.732	Cercocebus_atys
ENSFHEG00000012334	usb1	55	48.630	ENSCLAG00000007363	USB1	71	52.000	Chinchilla_lanigera
ENSFHEG00000012334	usb1	78	52.551	ENSCSAG00000004783	USB1	86	47.967	Chlorocebus_sabaeus
ENSFHEG00000012334	usb1	77	55.670	ENSCPBG00000026943	USB1	86	50.813	Chrysemys_picta_bellii
ENSFHEG00000012334	usb1	80	35.437	ENSCING00000011490	-	76	35.437	Ciona_intestinalis
ENSFHEG00000012334	usb1	78	34.483	ENSCSAVG00000000894	-	79	32.377	Ciona_savignyi
ENSFHEG00000012334	usb1	78	53.333	ENSCANG00000037135	USB1	94	46.250	Colobus_angolensis_palliatus
ENSFHEG00000012334	usb1	96	48.347	ENSCGRG00001011243	USB1	85	48.347	Cricetulus_griseus_chok1gshd
ENSFHEG00000012334	usb1	96	48.347	ENSCGRG00000013252	USB1	85	48.347	Cricetulus_griseus_crigri
ENSFHEG00000012334	usb1	98	64.898	ENSCSEG00000013881	usb1	88	64.082	Cynoglossus_semilaevis
ENSFHEG00000012334	usb1	77	81.538	ENSCVAG00000009252	usb1	84	81.538	Cyprinodon_variegatus
ENSFHEG00000012334	usb1	82	56.522	ENSDARG00000003841	usb1	88	52.610	Danio_rerio
ENSFHEG00000012334	usb1	96	47.131	ENSDORG00000001888	Usb1	86	48.163	Dipodomys_ordii
ENSFHEG00000012334	usb1	69	44.828	FBgn0037713	CG16790	65	43.114	Drosophila_melanogaster
ENSFHEG00000012334	usb1	86	47.442	ENSETEG00000019682	USB1	75	46.977	Echinops_telfairi
ENSFHEG00000012334	usb1	94	43.443	ENSEBUG00000005889	usb1	90	39.789	Eptatretus_burgeri
ENSFHEG00000012334	usb1	97	48.770	ENSEASG00005005484	USB1	86	48.361	Equus_asinus_asinus
ENSFHEG00000012334	usb1	97	48.770	ENSECAG00000019493	USB1	79	48.361	Equus_caballus
ENSFHEG00000012334	usb1	82	59.223	ENSELUG00000010974	usb1	88	55.102	Esox_lucius
ENSFHEG00000012334	usb1	80	50.495	ENSFCAG00000002693	USB1	87	48.366	Felis_catus
ENSFHEG00000012334	usb1	77	53.368	ENSFALG00000006876	USB1	85	49.180	Ficedula_albicollis
ENSFHEG00000012334	usb1	96	47.107	ENSFDAG00000010052	USB1	85	46.281	Fukomys_damarensis
ENSFHEG00000012334	usb1	78	67.010	ENSGMOG00000004228	usb1	86	66.495	Gadus_morhua
ENSFHEG00000012334	usb1	78	55.612	ENSGALG00000035604	USB1	85	50.826	Gallus_gallus
ENSFHEG00000012334	usb1	98	82.787	ENSGAFG00000021890	usb1	88	82.787	Gambusia_affinis
ENSFHEG00000012334	usb1	97	66.667	ENSGACG00000003257	usb1	87	66.667	Gasterosteus_aculeatus
ENSFHEG00000012334	usb1	96	52.479	ENSGAGG00000022572	USB1	86	51.653	Gopherus_agassizii
ENSFHEG00000012334	usb1	78	53.061	ENSGGOG00000017147	USB1	90	44.785	Gorilla_gorilla
ENSFHEG00000012334	usb1	88	66.818	ENSHBUG00000009823	usb1	88	63.745	Haplochromis_burtoni
ENSFHEG00000012334	usb1	96	46.694	ENSHGLG00000016078	USB1	84	46.281	Heterocephalus_glaber_female
ENSFHEG00000012334	usb1	96	46.694	ENSHGLG00100005562	USB1	84	46.281	Heterocephalus_glaber_male
ENSFHEG00000012334	usb1	75	72.193	ENSHCOG00000015633	usb1	87	62.295	Hippocampus_comes
ENSFHEG00000012334	usb1	98	52.529	ENSIPUG00000008601	usb1	89	52.918	Ictalurus_punctatus
ENSFHEG00000012334	usb1	96	47.934	ENSSTOG00000007548	USB1	86	48.980	Ictidomys_tridecemlineatus
ENSFHEG00000012334	usb1	96	48.770	ENSJJAG00000021859	Usb1	85	47.951	Jaculus_jaculus
ENSFHEG00000012334	usb1	92	71.616	ENSKMAG00000007200	usb1	88	68.898	Kryptolebias_marmoratus
ENSFHEG00000012334	usb1	98	63.200	ENSLBEG00000008452	usb1	83	62.500	Labrus_bergylta
ENSFHEG00000012334	usb1	76	56.545	ENSLACG00000000105	USB1	86	50.000	Latimeria_chalumnae
ENSFHEG00000012334	usb1	92	52.542	ENSLOCG00000000465	usb1	89	49.430	Lepisosteus_oculatus
ENSFHEG00000012334	usb1	91	39.912	ENSLAFG00000002267	USB1	80	39.474	Loxodonta_africana
ENSFHEG00000012334	usb1	78	53.061	ENSMFAG00000003926	USB1	92	45.732	Macaca_fascicularis
ENSFHEG00000012334	usb1	78	53.061	ENSMMUG00000022669	USB1	92	46.875	Macaca_mulatta
ENSFHEG00000012334	usb1	78	53.061	ENSMNEG00000042487	USB1	92	45.732	Macaca_nemestrina
ENSFHEG00000012334	usb1	78	53.061	ENSMLEG00000028756	USB1	92	45.732	Mandrillus_leucophaeus
ENSFHEG00000012334	usb1	98	69.919	ENSMAMG00000015092	usb1	88	69.106	Mastacembelus_armatus
ENSFHEG00000012334	usb1	88	66.818	ENSMZEG00005010008	usb1	88	63.745	Maylandia_zebra
ENSFHEG00000012334	usb1	96	48.374	ENSMAUG00000007832	Usb1	85	48.780	Mesocricetus_auratus
ENSFHEG00000012334	usb1	77	53.608	ENSMICG00000004900	USB1	92	45.122	Microcebus_murinus
ENSFHEG00000012334	usb1	96	47.154	ENSMOCG00000022647	Usb1	85	47.154	Microtus_ochrogaster
ENSFHEG00000012334	usb1	76	70.526	ENSMMOG00000000490	usb1	86	61.157	Mola_mola
ENSFHEG00000012334	usb1	73	53.804	ENSMODG00000014067	USB1	86	48.560	Monodelphis_domestica
ENSFHEG00000012334	usb1	86	70.561	ENSMALG00000005930	usb1	88	65.323	Monopterus_albus
ENSFHEG00000012334	usb1	96	46.748	MGP_CAROLIEiJ_G0031421	Usb1	88	51.000	Mus_caroli
ENSFHEG00000012334	usb1	96	46.748	ENSMUSG00000031792	Usb1	88	51.000	Mus_musculus
ENSFHEG00000012334	usb1	77	53.093	MGP_PahariEiJ_G0023019	Usb1	90	52.381	Mus_pahari
ENSFHEG00000012334	usb1	96	47.154	MGP_SPRETEiJ_G0032540	Usb1	85	46.748	Mus_spretus
ENSFHEG00000012334	usb1	74	53.226	ENSMPUG00000004684	USB1	77	50.000	Mustela_putorius_furo
ENSFHEG00000012334	usb1	77	54.124	ENSMLUG00000007400	USB1	84	54.124	Myotis_lucifugus
ENSFHEG00000012334	usb1	77	54.124	ENSNGAG00000009703	Usb1	86	49.590	Nannospalax_galili
ENSFHEG00000012334	usb1	88	59.459	ENSNBRG00000008747	usb1	78	67.456	Neolamprologus_brichardi
ENSFHEG00000012334	usb1	78	53.061	ENSNLEG00000003340	USB1	91	47.755	Nomascus_leucogenys
ENSFHEG00000012334	usb1	52	51.538	ENSOPRG00000011803	USB1	56	50.769	Ochotona_princeps
ENSFHEG00000012334	usb1	96	48.560	ENSODEG00000016214	USB1	88	46.000	Octodon_degus
ENSFHEG00000012334	usb1	98	65.200	ENSONIG00000011063	usb1	88	64.000	Oreochromis_niloticus
ENSFHEG00000012334	usb1	76	53.927	ENSOANG00000012118	USB1	80	53.927	Ornithorhynchus_anatinus
ENSFHEG00000012334	usb1	83	73.077	ENSORLG00000012479	usb1	88	66.803	Oryzias_latipes
ENSFHEG00000012334	usb1	83	72.115	ENSORLG00020018671	usb1	88	65.574	Oryzias_latipes_hni
ENSFHEG00000012334	usb1	83	73.558	ENSORLG00015009679	usb1	88	66.803	Oryzias_latipes_hsok
ENSFHEG00000012334	usb1	98	68.852	ENSOMEG00000012930	usb1	88	68.033	Oryzias_melastigma
ENSFHEG00000012334	usb1	80	48.020	ENSOGAG00000003273	USB1	84	44.856	Otolemur_garnettii
ENSFHEG00000012334	usb1	86	49.772	ENSOARG00000001107	USB1	82	49.533	Ovis_aries
ENSFHEG00000012334	usb1	78	52.551	ENSPPAG00000042137	USB1	92	44.444	Pan_paniscus
ENSFHEG00000012334	usb1	80	50.000	ENSPPRG00000024797	USB1	87	46.154	Panthera_pardus
ENSFHEG00000012334	usb1	80	49.505	ENSPTIG00000007506	USB1	87	47.712	Panthera_tigris_altaica
ENSFHEG00000012334	usb1	73	54.098	ENSPTRG00000008172	USB1	79	55.294	Pan_troglodytes
ENSFHEG00000012334	usb1	78	53.061	ENSPANG00000025138	USB1	92	45.732	Papio_anubis
ENSFHEG00000012334	usb1	80	62.500	ENSPKIG00000015109	usb1	89	52.632	Paramormyrops_kingsleyae
ENSFHEG00000012334	usb1	70	46.597	ENSPSIG00000004305	USB1	72	50.602	Pelodiscus_sinensis
ENSFHEG00000012334	usb1	76	67.895	ENSPMGG00000017725	usb1	86	58.264	Periophthalmus_magnuspinnatus
ENSFHEG00000012334	usb1	96	46.614	ENSPEMG00000016183	Usb1	86	48.560	Peromyscus_maniculatus_bairdii
ENSFHEG00000012334	usb1	76	53.125	ENSPMAG00000000462	usb1	81	53.125	Petromyzon_marinus
ENSFHEG00000012334	usb1	98	83.197	ENSPFOG00000011130	usb1	88	83.197	Poecilia_formosa
ENSFHEG00000012334	usb1	98	82.377	ENSPLAG00000009820	usb1	88	82.377	Poecilia_latipinna
ENSFHEG00000012334	usb1	98	83.607	ENSPMEG00000006402	usb1	88	83.607	Poecilia_mexicana
ENSFHEG00000012334	usb1	98	84.082	ENSPREG00000001047	usb1	99	84.082	Poecilia_reticulata
ENSFHEG00000012334	usb1	77	50.769	ENSPPYG00000007401	USB1	90	45.902	Pongo_abelii
ENSFHEG00000012334	usb1	72	55.000	ENSPCOG00000022612	USB1	92	44.785	Propithecus_coquereli
ENSFHEG00000012334	usb1	99	46.360	ENSPVAG00000004613	USB1	92	45.977	Pteropus_vampyrus
ENSFHEG00000012334	usb1	98	62.948	ENSPNYG00000022262	usb1	88	63.347	Pundamilia_nyererei
ENSFHEG00000012334	usb1	89	58.744	ENSPNAG00000011736	usb1	89	53.585	Pygocentrus_nattereri
ENSFHEG00000012334	usb1	91	47.845	ENSRNOG00000013216	Usb1	88	45.455	Rattus_norvegicus
ENSFHEG00000012334	usb1	73	54.098	ENSRBIG00000044466	USB1	92	44.785	Rhinopithecus_bieti
ENSFHEG00000012334	usb1	78	53.061	ENSRROG00000029211	USB1	92	44.785	Rhinopithecus_roxellana
ENSFHEG00000012334	usb1	78	53.061	ENSSBOG00000029362	USB1	92	44.444	Saimiri_boliviensis_boliviensis
ENSFHEG00000012334	usb1	73	52.717	ENSSHAG00000006993	USB1	76	52.062	Sarcophilus_harrisii
ENSFHEG00000012334	usb1	77	63.212	ENSSFOG00015023663	usb1	81	53.788	Scleropages_formosus
ENSFHEG00000012334	usb1	97	65.517	ENSSMAG00000015834	usb1	88	64.368	Scophthalmus_maximus
ENSFHEG00000012334	usb1	97	67.769	ENSSDUG00000002949	usb1	87	66.529	Seriola_dumerili
ENSFHEG00000012334	usb1	97	71.138	ENSSLDG00000014174	usb1	88	70.732	Seriola_lalandi_dorsalis
ENSFHEG00000012334	usb1	73	56.284	ENSSPUG00000006741	USB1	79	57.647	Sphenodon_punctatus
ENSFHEG00000012334	usb1	98	67.984	ENSSPAG00000007484	usb1	88	67.589	Stegastes_partitus
ENSFHEG00000012334	usb1	96	48.560	ENSSSCG00000002807	USB1	85	48.560	Sus_scrofa
ENSFHEG00000012334	usb1	70	56.571	ENSTGUG00000004792	USB1	66	57.143	Taeniopygia_guttata
ENSFHEG00000012334	usb1	97	66.116	ENSTRUG00000021069	usb1	87	64.876	Takifugu_rubripes
ENSFHEG00000012334	usb1	97	54.132	ENSTNIG00000000626	usb1	84	52.066	Tetraodon_nigroviridis
ENSFHEG00000012334	usb1	76	38.220	ENSTBEG00000001507	USB1	82	37.696	Tupaia_belangeri
ENSFHEG00000012334	usb1	74	53.763	ENSUAMG00000016823	USB1	80	50.000	Ursus_americanus
ENSFHEG00000012334	usb1	67	55.689	ENSUMAG00000021369	USB1	71	58.278	Ursus_maritimus
ENSFHEG00000012334	usb1	91	48.035	ENSVVUG00000023700	USB1	79	48.035	Vulpes_vulpes
ENSFHEG00000012334	usb1	73	55.435	ENSXETG00000013795	usb1	85	51.818	Xenopus_tropicalis
ENSFHEG00000012334	usb1	97	83.128	ENSXMAG00000024687	usb1	80	83.128	Xiphophorus_maculatus