EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000012491 (Gene tree)
Gene ID: 105940042
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Minus strand
Length: 7344 bases
Position: chrKN811595.1:673071-680414
Accession: 105940042
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000011108	PPR	PF01535.20	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000018004	-	3050	-	ENSFHEP00000011102	455 (aa)	-	A0A146UVV4
ENSFHET00000031459	-	2669	XM_012882487	ENSFHEP00000011108	574 (aa)	XP_012737941	-

Gene Model

Click here to download ENSFHEG00000012491's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000012491's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000012491	ptcd1	92	45.552	ENSG00000248919	ATP5MF-PTCD1	73	45.552	Homo_sapiens
ENSFHEG00000012491	ptcd1	92	46.098	ENSG00000106246	PTCD1	74	47.429	Homo_sapiens
ENSFHEG00000012491	ptcd1	83	70.084	ENSAPOG00000010679	ptcd1	75	70.084	Acanthochromis_polyacanthus
ENSFHEG00000012491	ptcd1	88	48.881	ENSAMEG00000006224	-	70	48.881	Ailuropoda_melanoleuca
ENSFHEG00000012491	ptcd1	89	75.490	ENSACIG00000017861	ptcd1	74	75.490	Amphilophus_citrinellus
ENSFHEG00000012491	ptcd1	83	70.711	ENSAOCG00000022617	ptcd1	72	70.711	Amphiprion_ocellaris
ENSFHEG00000012491	ptcd1	97	67.921	ENSAOCG00000020741	-	79	67.921	Amphiprion_ocellaris
ENSFHEG00000012491	ptcd1	95	68.659	ENSAPEG00000022632	ptcd1	78	68.659	Amphiprion_percula
ENSFHEG00000012491	ptcd1	93	69.517	ENSATEG00000007016	ptcd1	78	69.120	Anabas_testudineus
ENSFHEG00000012491	ptcd1	93	47.645	ENSAPLG00000006862	-	86	47.645	Anas_platyrhynchos
ENSFHEG00000012491	ptcd1	87	48.577	ENSACAG00000012871	-	69	48.577	Anolis_carolinensis
ENSFHEG00000012491	ptcd1	88	46.197	ENSANAG00000035790	-	77	46.197	Aotus_nancymaae
ENSFHEG00000012491	ptcd1	97	74.506	ENSACLG00000002824	ptcd1	78	74.506	Astatotilapia_calliptera
ENSFHEG00000012491	ptcd1	87	50.738	ENSAMXG00000037292	ptcd1	76	50.549	Astyanax_mexicanus
ENSFHEG00000012491	ptcd1	90	46.715	ENSBTAG00000020440	-	67	46.909	Bos_taurus
ENSFHEG00000012491	ptcd1	87	46.840	ENSCJAG00000015815	-	74	46.840	Callithrix_jacchus
ENSFHEG00000012491	ptcd1	87	49.333	ENSCAFG00000015055	-	69	49.333	Canis_familiaris
ENSFHEG00000012491	ptcd1	87	49.333	ENSCAFG00020014480	-	69	49.333	Canis_lupus_dingo
ENSFHEG00000012491	ptcd1	96	46.048	ENSCHIG00000027000	-	80	46.048	Capra_hircus
ENSFHEG00000012491	ptcd1	87	47.529	ENSTSYG00000029495	-	74	47.719	Carlito_syrichta
ENSFHEG00000012491	ptcd1	88	47.310	ENSCAPG00000014660	-	80	47.310	Cavia_aperea
ENSFHEG00000012491	ptcd1	88	48.052	ENSCPOG00000001780	-	75	48.052	Cavia_porcellus
ENSFHEG00000012491	ptcd1	87	46.617	ENSCCAG00000034025	-	74	46.617	Cebus_capucinus
ENSFHEG00000012491	ptcd1	87	47.137	ENSCATG00000040859	-	74	47.137	Cercocebus_atys
ENSFHEG00000012491	ptcd1	88	47.698	ENSCLAG00000006354	-	79	46.316	Chinchilla_lanigera
ENSFHEG00000012491	ptcd1	83	47.273	ENSCSAG00000017794	-	73	47.273	Chlorocebus_sabaeus
ENSFHEG00000012491	ptcd1	93	45.833	ENSCPBG00000020866	-	77	45.833	Chrysemys_picta_bellii
ENSFHEG00000012491	ptcd1	87	46.442	ENSCANG00000023441	-	74	46.442	Colobus_angolensis_palliatus
ENSFHEG00000012491	ptcd1	89	47.290	ENSCGRG00001023686	Ptcd1	76	47.290	Cricetulus_griseus_chok1gshd
ENSFHEG00000012491	ptcd1	89	47.290	ENSCGRG00000015031	Ptcd1	75	47.290	Cricetulus_griseus_crigri
ENSFHEG00000012491	ptcd1	95	62.568	ENSCSEG00000002378	ptcd1	77	62.568	Cynoglossus_semilaevis
ENSFHEG00000012491	ptcd1	97	81.932	ENSCVAG00000015826	ptcd1	81	81.932	Cyprinodon_variegatus
ENSFHEG00000012491	ptcd1	89	82.480	ENSCVAG00000003621	ptcd1	78	82.480	Cyprinodon_variegatus
ENSFHEG00000012491	ptcd1	89	50.657	ENSDARG00000076176	ptcd1	76	50.657	Danio_rerio
ENSFHEG00000012491	ptcd1	88	47.689	ENSDNOG00000009957	-	75	47.689	Dasypus_novemcinctus
ENSFHEG00000012491	ptcd1	88	47.180	ENSDORG00000000740	Ptcd1	76	47.180	Dipodomys_ordii
ENSFHEG00000012491	ptcd1	86	40.036	ENSEBUG00000014515	ptcd1	93	40.036	Eptatretus_burgeri
ENSFHEG00000012491	ptcd1	88	48.237	ENSEASG00005002480	-	75	48.603	Equus_asinus_asinus
ENSFHEG00000012491	ptcd1	88	48.529	ENSECAG00000016617	-	75	48.704	Equus_caballus
ENSFHEG00000012491	ptcd1	95	56.207	ENSELUG00000016517	ptcd1	78	56.207	Esox_lucius
ENSFHEG00000012491	ptcd1	94	46.549	ENSFCAG00000015069	-	78	46.655	Felis_catus
ENSFHEG00000012491	ptcd1	87	47.026	ENSFALG00000013803	-	74	46.654	Ficedula_albicollis
ENSFHEG00000012491	ptcd1	88	47.048	ENSFDAG00000006393	-	75	48.037	Fukomys_damarensis
ENSFHEG00000012491	ptcd1	95	63.423	ENSGMOG00000007639	ptcd1	89	63.423	Gadus_morhua
ENSFHEG00000012491	ptcd1	93	46.154	ENSGALG00000004711	-	80	46.154	Gallus_gallus
ENSFHEG00000012491	ptcd1	95	79.636	ENSGAFG00000013175	ptcd1	79	79.818	Gambusia_affinis
ENSFHEG00000012491	ptcd1	96	72.401	ENSGACG00000016607	ptcd1	86	72.401	Gasterosteus_aculeatus
ENSFHEG00000012491	ptcd1	84	46.641	ENSGAGG00000021832	-	76	46.641	Gopherus_agassizii
ENSFHEG00000012491	ptcd1	92	45.848	ENSGGOG00000015123	-	78	45.848	Gorilla_gorilla
ENSFHEG00000012491	ptcd1	96	74.457	ENSHBUG00000018275	ptcd1	77	74.457	Haplochromis_burtoni
ENSFHEG00000012491	ptcd1	90	47.080	ENSHGLG00000017621	-	77	47.080	Heterocephalus_glaber_female
ENSFHEG00000012491	ptcd1	90	47.080	ENSHGLG00100007218	-	77	47.080	Heterocephalus_glaber_male
ENSFHEG00000012491	ptcd1	94	63.519	ENSHCOG00000010784	ptcd1	77	64.325	Hippocampus_comes
ENSFHEG00000012491	ptcd1	92	47.283	ENSSTOG00000001682	-	77	47.283	Ictidomys_tridecemlineatus
ENSFHEG00000012491	ptcd1	89	47.212	ENSJJAG00000000319	Ptcd1	76	47.114	Jaculus_jaculus
ENSFHEG00000012491	ptcd1	97	73.882	ENSKMAG00000008708	ptcd1	78	73.882	Kryptolebias_marmoratus
ENSFHEG00000012491	ptcd1	96	69.381	ENSLBEG00000008061	ptcd1	78	69.558	Labrus_bergylta
ENSFHEG00000012491	ptcd1	87	49.712	ENSLACG00000011172	ptcd1	73	49.712	Latimeria_chalumnae
ENSFHEG00000012491	ptcd1	92	50.000	ENSLOCG00000004833	ptcd1	85	48.995	Lepisosteus_oculatus
ENSFHEG00000012491	ptcd1	87	49.240	ENSLAFG00000002588	-	74	49.240	Loxodonta_africana
ENSFHEG00000012491	ptcd1	87	46.816	ENSMFAG00000041324	-	74	47.137	Macaca_fascicularis
ENSFHEG00000012491	ptcd1	87	46.629	ENSMMUG00000030408	-	74	46.629	Macaca_mulatta
ENSFHEG00000012491	ptcd1	87	47.566	ENSMNEG00000043786	-	74	47.566	Macaca_nemestrina
ENSFHEG00000012491	ptcd1	87	33.015	ENSMLEG00000031179	-	70	34.351	Mandrillus_leucophaeus
ENSFHEG00000012491	ptcd1	94	70.513	ENSMAMG00000007623	ptcd1	75	70.513	Mastacembelus_armatus
ENSFHEG00000012491	ptcd1	97	73.968	ENSMZEG00005012722	ptcd1	78	73.968	Maylandia_zebra
ENSFHEG00000012491	ptcd1	93	46.060	ENSMGAG00000004211	-	73	46.060	Meleagris_gallopavo
ENSFHEG00000012491	ptcd1	89	45.656	ENSMICG00000017428	-	75	46.011	Microcebus_murinus
ENSFHEG00000012491	ptcd1	96	72.072	ENSMMOG00000020243	ptcd1	80	73.114	Mola_mola
ENSFHEG00000012491	ptcd1	94	44.310	ENSMODG00000001350	-	78	44.310	Monodelphis_domestica
ENSFHEG00000012491	ptcd1	97	70.232	ENSMALG00000018442	ptcd1	78	70.410	Monopterus_albus
ENSFHEG00000012491	ptcd1	90	46.898	MGP_CAROLIEiJ_G0028011	Ptcd1	78	46.898	Mus_caroli
ENSFHEG00000012491	ptcd1	90	46.812	ENSMUSG00000029624	Ptcd1	78	46.812	Mus_musculus
ENSFHEG00000012491	ptcd1	90	47.541	MGP_PahariEiJ_G0024580	Ptcd1	78	47.541	Mus_pahari
ENSFHEG00000012491	ptcd1	90	46.812	MGP_SPRETEiJ_G0029012	Ptcd1	78	46.618	Mus_spretus
ENSFHEG00000012491	ptcd1	88	48.968	ENSMPUG00000016518	-	75	49.064	Mustela_putorius_furo
ENSFHEG00000012491	ptcd1	87	48.387	ENSMLUG00000010994	-	69	48.387	Myotis_lucifugus
ENSFHEG00000012491	ptcd1	93	72.388	ENSNBRG00000010079	ptcd1	75	73.846	Neolamprologus_brichardi
ENSFHEG00000012491	ptcd1	87	46.542	ENSNLEG00000011060	-	87	46.542	Nomascus_leucogenys
ENSFHEG00000012491	ptcd1	88	46.529	ENSMEUG00000006930	-	76	46.529	Notamacropus_eugenii
ENSFHEG00000012491	ptcd1	77	68.333	ENSOPRG00000013647	-	65	69.492	Ochotona_princeps
ENSFHEG00000012491	ptcd1	93	71.161	ENSONIG00000003168	ptcd1	88	71.161	Oreochromis_niloticus
ENSFHEG00000012491	ptcd1	84	47.255	ENSOANG00000007728	-	66	47.255	Ornithorhynchus_anatinus
ENSFHEG00000012491	ptcd1	96	45.739	ENSOCUG00000010584	-	78	45.739	Oryctolagus_cuniculus
ENSFHEG00000012491	ptcd1	92	73.962	ENSORLG00000009275	ptcd1	78	73.962	Oryzias_latipes
ENSFHEG00000012491	ptcd1	92	74.528	ENSORLG00020000988	ptcd1	78	74.528	Oryzias_latipes_hni
ENSFHEG00000012491	ptcd1	93	72.948	ENSORLG00015010557	ptcd1	79	72.948	Oryzias_latipes_hsok
ENSFHEG00000012491	ptcd1	92	75.189	ENSOMEG00000020627	ptcd1	79	75.189	Oryzias_melastigma
ENSFHEG00000012491	ptcd1	89	45.438	ENSOGAG00000010877	-	76	45.438	Otolemur_garnettii
ENSFHEG00000012491	ptcd1	94	42.160	ENSOARG00000018676	-	79	42.160	Ovis_aries
ENSFHEG00000012491	ptcd1	92	45.917	ENSPPAG00000036024	-	78	45.917	Pan_paniscus
ENSFHEG00000012491	ptcd1	87	48.582	ENSPPRG00000003478	-	74	48.582	Panthera_pardus
ENSFHEG00000012491	ptcd1	92	46.014	ENSPTRG00000019452	-	78	46.014	Pan_troglodytes
ENSFHEG00000012491	ptcd1	87	47.004	ENSPANG00000016730	-	74	47.004	Papio_anubis
ENSFHEG00000012491	ptcd1	87	52.601	ENSPKIG00000014215	ptcd1	75	52.601	Paramormyrops_kingsleyae
ENSFHEG00000012491	ptcd1	87	46.512	ENSPSIG00000011184	-	87	46.512	Pelodiscus_sinensis
ENSFHEG00000012491	ptcd1	87	42.115	ENSPMAG00000009667	ptcd1	100	42.115	Petromyzon_marinus
ENSFHEG00000012491	ptcd1	92	44.779	ENSPCIG00000024778	-	76	44.779	Phascolarctos_cinereus
ENSFHEG00000012491	ptcd1	95	78.584	ENSPFOG00000004458	ptcd1	79	78.584	Poecilia_formosa
ENSFHEG00000012491	ptcd1	95	78.520	ENSPLAG00000011051	ptcd1	79	78.700	Poecilia_latipinna
ENSFHEG00000012491	ptcd1	95	78.727	ENSPMEG00000020547	ptcd1	79	78.727	Poecilia_mexicana
ENSFHEG00000012491	ptcd1	95	78.182	ENSPREG00000000059	ptcd1	78	78.727	Poecilia_reticulata
ENSFHEG00000012491	ptcd1	92	46.570	ENSPPYG00000017377	-	82	46.570	Pongo_abelii
ENSFHEG00000012491	ptcd1	78	77.083	ENSPCAG00000001852	-	74	77.083	Procavia_capensis
ENSFHEG00000012491	ptcd1	89	46.082	ENSPCOG00000018596	-	75	46.082	Propithecus_coquereli
ENSFHEG00000012491	ptcd1	96	74.457	ENSPNYG00000019993	ptcd1	77	74.457	Pundamilia_nyererei
ENSFHEG00000012491	ptcd1	87	54.215	ENSPNAG00000014931	ptcd1	77	52.381	Pygocentrus_nattereri
ENSFHEG00000012491	ptcd1	87	48.669	ENSRNOG00000000987	Ptcd1	76	48.669	Rattus_norvegicus
ENSFHEG00000012491	ptcd1	87	47.137	ENSRBIG00000043393	-	74	47.137	Rhinopithecus_bieti
ENSFHEG00000012491	ptcd1	87	48.375	ENSRROG00000036420	-	74	48.375	Rhinopithecus_roxellana
ENSFHEG00000012491	ptcd1	87	46.374	ENSSBOG00000024114	-	74	46.374	Saimiri_boliviensis_boliviensis
ENSFHEG00000012491	ptcd1	87	47.674	ENSSHAG00000011376	-	78	47.674	Sarcophilus_harrisii
ENSFHEG00000012491	ptcd1	87	52.174	ENSSFOG00015007909	ptcd1	72	52.363	Scleropages_formosus
ENSFHEG00000012491	ptcd1	96	64.811	ENSSMAG00000000218	ptcd1	87	64.811	Scophthalmus_maximus
ENSFHEG00000012491	ptcd1	93	70.632	ENSSDUG00000015671	ptcd1	75	72.989	Seriola_dumerili
ENSFHEG00000012491	ptcd1	88	73.190	ENSSLDG00000014261	ptcd1	73	73.190	Seriola_lalandi_dorsalis
ENSFHEG00000012491	ptcd1	95	44.923	ENSSPUG00000003540	-	78	44.578	Sphenodon_punctatus
ENSFHEG00000012491	ptcd1	96	71.658	ENSSPAG00000011049	ptcd1	78	71.658	Stegastes_partitus
ENSFHEG00000012491	ptcd1	88	48.807	ENSSSCG00000007622	-	79	48.807	Sus_scrofa
ENSFHEG00000012491	ptcd1	89	47.985	ENSTGUG00000007563	-	86	47.985	Taeniopygia_guttata
ENSFHEG00000012491	ptcd1	93	68.156	ENSTRUG00000013471	ptcd1	76	67.877	Takifugu_rubripes
ENSFHEG00000012491	ptcd1	92	67.850	ENSTNIG00000008271	ptcd1	79	67.850	Tetraodon_nigroviridis
ENSFHEG00000012491	ptcd1	93	45.965	ENSTBEG00000011021	-	79	45.965	Tupaia_belangeri
ENSFHEG00000012491	ptcd1	89	48.689	ENSTTRG00000003006	-	76	48.689	Tursiops_truncatus
ENSFHEG00000012491	ptcd1	88	48.224	ENSUAMG00000008049	-	75	48.507	Ursus_americanus
ENSFHEG00000012491	ptcd1	87	49.524	ENSVVUG00000008836	-	74	49.524	Vulpes_vulpes
ENSFHEG00000012491	ptcd1	87	48.256	ENSXETG00000009891	ptcd1	75	48.256	Xenopus_tropicalis
ENSFHEG00000012491	ptcd1	94	79.044	ENSXMAG00000015540	ptcd1	78	79.228	Xiphophorus_maculatus