EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000013106 (Gene tree)
Gene ID: 105918413
Gene Symbol: rab42a
Alias: wu:fk59e12|zgc:73061
Full Name: ras-related protein Rab-39B-like
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Minus strand
Length: 12899 bases
Position: chrKN805531.1:477937-490835
Accession: 105918413
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000028778	MMR_HSR1	PF01926.23	8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000018729	-	5359	XM_012853496	ENSFHEP00000028778	218 (aa)	XP_012708950	UPI00064497DD

Gene Model

Click here to download ENSFHEG00000013106's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000013106's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000013106	rab42a	69	34.437	ENSFHEG00000009108	kras	98	31.937
ENSFHEG00000013106	rab42a	72	34.615	ENSFHEG00000023069	rab23	70	33.929
ENSFHEG00000013106	rab42a	100	54.587	ENSFHEG00000002885	-	100	54.587
ENSFHEG00000013106	rab42a	82	41.573	ENSFHEG00000014414	-	87	41.573
ENSFHEG00000013106	rab42a	76	33.728	ENSFHEG00000005588	RAB7A	74	33.728
ENSFHEG00000013106	rab42a	72	37.736	ENSFHEG00000002502	si:dkey-13a21.4	77	37.736
ENSFHEG00000013106	rab42a	78	34.682	ENSFHEG00000004532	rab34b	68	34.682
ENSFHEG00000013106	rab42a	85	41.398	ENSFHEG00000018353	rab11bb	84	41.398
ENSFHEG00000013106	rab42a	88	36.458	ENSFHEG00000010509	rab4a	89	36.458
ENSFHEG00000013106	rab42a	85	40.860	ENSFHEG00000019668	rab11a	86	40.860
ENSFHEG00000013106	rab42a	76	40.606	ENSFHEG00000019455	rab18a	80	40.606
ENSFHEG00000013106	rab42a	79	41.279	ENSFHEG00000004891	rab35b	86	43.750
ENSFHEG00000013106	rab42a	86	46.809	ENSFHEG00000001296	rab2a	88	46.809
ENSFHEG00000013106	rab42a	84	39.130	ENSFHEG00000014924	rab1ba	91	39.130
ENSFHEG00000013106	rab42a	67	44.595	ENSFHEG00000006820	rab33ba	61	44.595
ENSFHEG00000013106	rab42a	72	40.127	ENSFHEG00000001477	-	61	40.127
ENSFHEG00000013106	rab42a	76	42.424	ENSFHEG00000020035	rab18b	80	42.424
ENSFHEG00000013106	rab42a	72	39.130	ENSFHEG00000021111	rab9a	79	39.130
ENSFHEG00000013106	rab42a	83	32.967	ENSFHEG00000003799	rheb	93	32.967
ENSFHEG00000013106	rab42a	78	43.275	ENSFHEG00000022176	zgc:171927	79	43.275
ENSFHEG00000013106	rab42a	100	55.046	ENSFHEG00000020877	RAB39B	100	55.046
ENSFHEG00000013106	rab42a	78	41.860	ENSFHEG00000004319	rab12	69	41.860
ENSFHEG00000013106	rab42a	75	31.325	ENSFHEG00000015015	rabl2	60	31.325
ENSFHEG00000013106	rab42a	72	39.490	ENSFHEG00000022524	rab6bb	75	39.490
ENSFHEG00000013106	rab42a	74	36.420	ENSFHEG00000014087	RAB15	79	37.500
ENSFHEG00000013106	rab42a	77	34.118	ENSFHEG00000006551	rab36	63	34.118
ENSFHEG00000013106	rab42a	81	42.045	ENSFHEG00000000832	rab11al	83	42.045
ENSFHEG00000013106	rab42a	85	42.473	ENSFHEG00000022642	rab11ba	84	42.473
ENSFHEG00000013106	rab42a	69	34.437	ENSFHEG00000010055	hrasb	85	33.537
ENSFHEG00000013106	rab42a	83	41.667	ENSFHEG00000013918	rab30	88	41.667
ENSFHEG00000013106	rab42a	79	42.442	ENSFHEG00000021221	rab13	93	42.442
ENSFHEG00000013106	rab42a	98	38.318	ENSFHEG00000000695	-	97	38.318
ENSFHEG00000013106	rab42a	75	40.476	ENSFHEG00000018764	RAB9A	77	40.476
ENSFHEG00000013106	rab42a	69	37.500	ENSFHEG00000004875	si:ch73-116o1.2	78	37.195
ENSFHEG00000013106	rab42a	78	33.526	ENSFHEG00000013691	rab34a	66	33.526
ENSFHEG00000013106	rab42a	67	41.892	ENSFHEG00000011483	zgc:101559	63	41.892
ENSFHEG00000013106	rab42a	74	40.000	ENSFHEG00000009417	rab9b	74	40.000
ENSFHEG00000013106	rab42a	83	41.111	ENSFHEG00000003018	rab25b	86	41.111
ENSFHEG00000013106	rab42a	75	37.195	ENSFHEG00000012117	rab5c	74	37.195
ENSFHEG00000013106	rab42a	74	34.337	ENSFHEG00000007101	RAB7A	79	34.337
ENSFHEG00000013106	rab42a	75	31.325	ENSFHEG00000016504	si:cabz01085950.1	82	31.325
ENSFHEG00000013106	rab42a	85	41.398	ENSFHEG00000022676	-	84	41.398
ENSFHEG00000013106	rab42a	75	34.146	ENSFHEG00000012702	rab22a	84	34.146
ENSFHEG00000013106	rab42a	86	60.000	ENSFHEG00000012041	si:dkey-34d22.5	85	60.000
ENSFHEG00000013106	rab42a	77	31.737	ENSFHEG00000008212	rhebl1	88	31.737
ENSFHEG00000013106	rab42a	75	35.976	ENSFHEG00000015268	-	74	35.976
ENSFHEG00000013106	rab42a	86	41.176	ENSFHEG00000022985	rab1ab	90	41.176
ENSFHEG00000013106	rab42a	65	45.070	ENSFHEG00000018450	RAB14	71	45.070
ENSFHEG00000013106	rab42a	77	41.667	ENSFHEG00000009378	rab15	78	41.667
ENSFHEG00000013106	rab42a	75	39.645	ENSFHEG00000022141	rab33a	70	39.645
ENSFHEG00000013106	rab42a	75	35.366	ENSFHEG00000014070	rab5aa	75	35.366
ENSFHEG00000013106	rab42a	99	38.140	ENSFHEG00000014186	rab25a	97	38.140
ENSFHEG00000013106	rab42a	72	35.185	ENSFHEG00000015993	RAB29	79	35.185
ENSFHEG00000013106	rab42a	72	40.127	ENSFHEG00000015996	RAB41	73	40.127

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000013106	rab42a	100	96.789	ENSAPOG00000009188	rab42a	100	96.789	Acanthochromis_polyacanthus
ENSFHEG00000013106	rab42a	100	95.872	ENSACIG00000003102	rab42a	100	95.872	Amphilophus_citrinellus
ENSFHEG00000013106	rab42a	100	97.706	ENSAOCG00000012921	rab42a	83	97.706	Amphiprion_ocellaris
ENSFHEG00000013106	rab42a	100	97.706	ENSAPEG00000007713	rab42a	83	97.706	Amphiprion_percula
ENSFHEG00000013106	rab42a	100	94.495	ENSATEG00000009052	rab42a	100	94.495	Anabas_testudineus
ENSFHEG00000013106	rab42a	100	95.413	ENSACLG00000007514	rab42a	100	95.413	Astatotilapia_calliptera
ENSFHEG00000013106	rab42a	100	89.908	ENSAMXG00000032729	rab42a	100	89.908	Astyanax_mexicanus
ENSFHEG00000013106	rab42a	100	92.661	ENSCSEG00000010582	rab42a	100	92.661	Cynoglossus_semilaevis
ENSFHEG00000013106	rab42a	100	46.575	ENSDARG00000102580	CU571310.1	99	46.575	Danio_rerio
ENSFHEG00000013106	rab42a	100	90.367	ENSDARG00000034215	rab42a	100	90.367	Danio_rerio
ENSFHEG00000013106	rab42a	100	89.450	ENSELUG00000010345	rab42a	100	89.450	Esox_lucius
ENSFHEG00000013106	rab42a	100	98.165	ENSGAFG00000002141	rab42a	100	98.165	Gambusia_affinis
ENSFHEG00000013106	rab42a	100	95.413	ENSHBUG00000015126	rab42a	82	95.413	Haplochromis_burtoni
ENSFHEG00000013106	rab42a	100	86.697	ENSIPUG00000011376	rab42a	100	86.697	Ictalurus_punctatus
ENSFHEG00000013106	rab42a	100	97.248	ENSKMAG00000007267	rab42a	100	97.248	Kryptolebias_marmoratus
ENSFHEG00000013106	rab42a	100	95.872	ENSLBEG00000001193	rab42a	100	95.872	Labrus_bergylta
ENSFHEG00000013106	rab42a	100	64.220	ENSLACG00000012755	-	100	64.220	Latimeria_chalumnae
ENSFHEG00000013106	rab42a	100	81.651	ENSLOCG00000003453	rab42a	100	81.651	Lepisosteus_oculatus
ENSFHEG00000013106	rab42a	100	50.685	ENSLOCG00000015825	-	99	50.685	Lepisosteus_oculatus
ENSFHEG00000013106	rab42a	100	96.789	ENSMAMG00000002296	rab42a	100	96.789	Mastacembelus_armatus
ENSFHEG00000013106	rab42a	100	95.413	ENSMZEG00005012460	rab42a	82	95.413	Maylandia_zebra
ENSFHEG00000013106	rab42a	100	92.661	ENSMMOG00000014358	rab42a	100	92.661	Mola_mola
ENSFHEG00000013106	rab42a	100	95.413	ENSNBRG00000021487	rab42a	82	95.413	Neolamprologus_brichardi
ENSFHEG00000013106	rab42a	100	96.330	ENSORLG00000022335	rab42a	100	96.330	Oryzias_latipes
ENSFHEG00000013106	rab42a	100	96.330	ENSORLG00020013895	rab42a	100	96.330	Oryzias_latipes_hni
ENSFHEG00000013106	rab42a	100	96.330	ENSORLG00015004273	rab42a	100	96.330	Oryzias_latipes_hsok
ENSFHEG00000013106	rab42a	100	96.330	ENSOMEG00000020418	rab42a	100	96.330	Oryzias_melastigma
ENSFHEG00000013106	rab42a	89	48.969	ENSPKIG00000015234	-	93	48.969	Paramormyrops_kingsleyae
ENSFHEG00000013106	rab42a	100	77.064	ENSPKIG00000021215	-	100	77.064	Paramormyrops_kingsleyae
ENSFHEG00000013106	rab42a	90	95.939	ENSPMGG00000024112	rab42a	90	95.939	Periophthalmus_magnuspinnatus
ENSFHEG00000013106	rab42a	100	97.706	ENSPFOG00000004838	rab42a	82	97.706	Poecilia_formosa
ENSFHEG00000013106	rab42a	100	97.706	ENSPLAG00000005628	rab42a	100	97.706	Poecilia_latipinna
ENSFHEG00000013106	rab42a	100	97.706	ENSPMEG00000019497	rab42a	100	97.706	Poecilia_mexicana
ENSFHEG00000013106	rab42a	100	98.165	ENSPREG00000013962	rab42a	100	98.165	Poecilia_reticulata
ENSFHEG00000013106	rab42a	100	95.413	ENSPNYG00000010325	rab42a	82	95.413	Pundamilia_nyererei
ENSFHEG00000013106	rab42a	100	89.450	ENSPNAG00000016567	rab42a	100	89.450	Pygocentrus_nattereri
ENSFHEG00000013106	rab42a	100	46.575	ENSSFOG00015016000	-	97	46.575	Scleropages_formosus
ENSFHEG00000013106	rab42a	100	84.862	ENSSFOG00015020732	rab42a	100	84.862	Scleropages_formosus
ENSFHEG00000013106	rab42a	100	94.037	ENSSMAG00000020311	rab42a	100	94.037	Scophthalmus_maximus
ENSFHEG00000013106	rab42a	100	96.330	ENSSDUG00000011851	rab42a	100	96.330	Seriola_dumerili
ENSFHEG00000013106	rab42a	100	96.330	ENSSLDG00000020354	rab42a	100	96.330	Seriola_lalandi_dorsalis
ENSFHEG00000013106	rab42a	100	96.789	ENSSPAG00000016167	rab42a	100	96.789	Stegastes_partitus
ENSFHEG00000013106	rab42a	100	94.954	ENSTRUG00000010224	rab42a	100	94.954	Takifugu_rubripes
ENSFHEG00000013106	rab42a	100	98.624	ENSXCOG00000003428	rab42a	100	98.624	Xiphophorus_couchianus
ENSFHEG00000013106	rab42a	100	98.624	ENSXMAG00000028376	rab42a	100	98.624	Xiphophorus_maculatus