EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000013282 (Gene tree)
Gene ID: 105915979
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 22781 bases
Position: chrKN805681.1:403246-426026
Accession: 105915979
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000028894	EST1	PF10374.9	1.4e-13	1	1
ENSFHEP00000028894	EST1_DNA_bind	PF10373.9	1.5e-57	1	1
ENSFHEP00000028894	PIN_4	PF13638.6	6.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000018951	-	6940	XM_012850272	ENSFHEP00000028894	1615 (aa)	XP_012705726	UPI000644CBE5

Gene Model

Click here to download ENSFHEG00000013282's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000013282's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000013282	smg6	75	53.230	ENSG00000070366	SMG6	100	56.307	Homo_sapiens
ENSFHEG00000013282	smg6	100	71.084	ENSAPOG00000019448	smg6	100	71.971	Acanthochromis_polyacanthus
ENSFHEG00000013282	smg6	75	53.474	ENSAMEG00000007632	SMG6	83	53.079	Ailuropoda_melanoleuca
ENSFHEG00000013282	smg6	93	68.981	ENSACIG00000012997	smg6	100	68.851	Amphilophus_citrinellus
ENSFHEG00000013282	smg6	100	71.377	ENSAOCG00000002630	smg6	100	72.246	Amphiprion_ocellaris
ENSFHEG00000013282	smg6	100	71.042	ENSAPEG00000019101	smg6	100	71.911	Amphiprion_percula
ENSFHEG00000013282	smg6	100	69.029	ENSATEG00000006483	smg6	100	68.713	Anabas_testudineus
ENSFHEG00000013282	smg6	65	48.474	ENSACAG00000011783	SMG6	87	47.795	Anolis_carolinensis
ENSFHEG00000013282	smg6	75	53.162	ENSANAG00000035760	SMG6	83	52.767	Aotus_nancymaae
ENSFHEG00000013282	smg6	100	68.582	ENSACLG00000005288	smg6	100	69.270	Astatotilapia_calliptera
ENSFHEG00000013282	smg6	75	66.605	ENSAMXG00000017326	smg6	88	66.047	Astyanax_mexicanus
ENSFHEG00000013282	smg6	75	54.092	ENSBTAG00000000267	SMG6	83	53.546	Bos_taurus
ENSFHEG00000013282	smg6	75	53.344	ENSCJAG00000001820	SMG6	83	52.840	Callithrix_jacchus
ENSFHEG00000013282	smg6	75	53.396	ENSCAFG00000019260	SMG6	83	53.001	Canis_familiaris
ENSFHEG00000013282	smg6	75	53.396	ENSCAFG00020009770	SMG6	83	53.001	Canis_lupus_dingo
ENSFHEG00000013282	smg6	75	53.894	ENSCHIG00000021998	SMG6	83	53.468	Capra_hircus
ENSFHEG00000013282	smg6	75	53.115	ENSTSYG00000003406	SMG6	100	56.124	Carlito_syrichta
ENSFHEG00000013282	smg6	75	45.847	ENSCAPG00000016197	SMG6	81	51.693	Cavia_aperea
ENSFHEG00000013282	smg6	75	53.518	ENSCPOG00000014878	SMG6	84	57.346	Cavia_porcellus
ENSFHEG00000013282	smg6	75	53.001	ENSCCAG00000035801	SMG6	83	52.685	Cebus_capucinus
ENSFHEG00000013282	smg6	75	53.230	ENSCATG00000031956	SMG6	83	53.074	Cercocebus_atys
ENSFHEG00000013282	smg6	75	52.791	ENSCLAG00000006748	SMG6	84	56.872	Chinchilla_lanigera
ENSFHEG00000013282	smg6	75	53.463	ENSCSAG00000013800	SMG6	83	53.307	Chlorocebus_sabaeus
ENSFHEG00000013282	smg6	93	52.006	ENSCPBG00000020369	SMG6	100	51.664	Chrysemys_picta_bellii
ENSFHEG00000013282	smg6	75	53.271	ENSCANG00000031764	SMG6	100	56.673	Colobus_angolensis_palliatus
ENSFHEG00000013282	smg6	74	48.865	ENSCGRG00000007782	Smg6	84	48.906	Cricetulus_griseus_crigri
ENSFHEG00000013282	smg6	100	65.120	ENSCSEG00000012757	smg6	100	64.311	Cynoglossus_semilaevis
ENSFHEG00000013282	smg6	100	83.742	ENSCVAG00000012789	smg6	100	83.804	Cyprinodon_variegatus
ENSFHEG00000013282	smg6	100	57.177	ENSDARG00000100481	smg6	100	56.090	Danio_rerio
ENSFHEG00000013282	smg6	75	53.193	ENSDNOG00000048283	SMG6	83	52.840	Dasypus_novemcinctus
ENSFHEG00000013282	smg6	75	50.155	ENSDORG00000016614	Smg6	84	57.346	Dipodomys_ordii
ENSFHEG00000013282	smg6	62	85.000	ENSETEG00000016790	SMG6	71	85.000	Echinops_telfairi
ENSFHEG00000013282	smg6	60	46.725	ENSEBUG00000005059	smg6	63	46.758	Eptatretus_burgeri
ENSFHEG00000013282	smg6	75	53.261	ENSEASG00005009318	SMG6	83	52.982	Equus_asinus_asinus
ENSFHEG00000013282	smg6	75	53.416	ENSECAG00000006519	SMG6	83	53.137	Equus_caballus
ENSFHEG00000013282	smg6	75	45.866	ENSEEUG00000003493	SMG6	80	56.591	Erinaceus_europaeus
ENSFHEG00000013282	smg6	81	70.745	ENSELUG00000005934	smg6	95	67.245	Esox_lucius
ENSFHEG00000013282	smg6	75	53.438	ENSFCAG00000028817	SMG6	83	53.203	Felis_catus
ENSFHEG00000013282	smg6	77	52.941	ENSFALG00000006538	SMG6	88	52.254	Ficedula_albicollis
ENSFHEG00000013282	smg6	86	53.499	ENSFDAG00000015106	SMG6	94	53.074	Fukomys_damarensis
ENSFHEG00000013282	smg6	78	52.834	ENSGALG00000003108	SMG6	85	52.042	Gallus_gallus
ENSFHEG00000013282	smg6	100	85.749	ENSGAFG00000000379	smg6	100	84.828	Gambusia_affinis
ENSFHEG00000013282	smg6	82	79.487	ENSGACG00000020521	smg6	99	79.487	Gasterosteus_aculeatus
ENSFHEG00000013282	smg6	78	51.550	ENSGAGG00000025617	SMG6	88	51.208	Gopherus_agassizii
ENSFHEG00000013282	smg6	75	53.307	ENSGGOG00000017156	SMG6	83	52.882	Gorilla_gorilla
ENSFHEG00000013282	smg6	100	69.143	ENSHBUG00000021311	smg6	100	68.825	Haplochromis_burtoni
ENSFHEG00000013282	smg6	86	53.037	ENSHGLG00000012882	SMG6	94	53.110	Heterocephalus_glaber_female
ENSFHEG00000013282	smg6	86	53.055	ENSHGLG00100017815	SMG6	94	53.110	Heterocephalus_glaber_male
ENSFHEG00000013282	smg6	66	68.733	ENSHCOG00000008761	smg6	83	67.814	Hippocampus_comes
ENSFHEG00000013282	smg6	100	53.243	ENSIPUG00000012493	smg6	100	53.060	Ictalurus_punctatus
ENSFHEG00000013282	smg6	75	53.271	ENSSTOG00000028127	SMG6	84	56.872	Ictidomys_tridecemlineatus
ENSFHEG00000013282	smg6	55	51.380	ENSJJAG00000015367	Smg6	75	49.794	Jaculus_jaculus
ENSFHEG00000013282	smg6	100	72.973	ENSKMAG00000000279	smg6	100	73.165	Kryptolebias_marmoratus
ENSFHEG00000013282	smg6	100	68.239	ENSLBEG00000002184	smg6	100	68.198	Labrus_bergylta
ENSFHEG00000013282	smg6	67	63.419	ENSLOCG00000006448	smg6	100	54.534	Lepisosteus_oculatus
ENSFHEG00000013282	smg6	75	52.927	ENSLAFG00000001261	SMG6	83	52.648	Loxodonta_africana
ENSFHEG00000013282	smg6	75	53.463	ENSMFAG00000003394	SMG6	83	53.307	Macaca_fascicularis
ENSFHEG00000013282	smg6	75	53.385	ENSMMUG00000023161	SMG6	83	53.230	Macaca_mulatta
ENSFHEG00000013282	smg6	75	51.442	ENSMNEG00000044592	SMG6	83	51.286	Macaca_nemestrina
ENSFHEG00000013282	smg6	70	58.217	ENSMLEG00000029353	SMG6	84	57.968	Mandrillus_leucophaeus
ENSFHEG00000013282	smg6	100	69.134	ENSMAMG00000020119	smg6	100	70.418	Mastacembelus_armatus
ENSFHEG00000013282	smg6	100	68.402	ENSMZEG00005024736	smg6	100	68.402	Maylandia_zebra
ENSFHEG00000013282	smg6	54	49.675	ENSMGAG00000005401	-	81	49.566	Meleagris_gallopavo
ENSFHEG00000013282	smg6	75	53.385	ENSMICG00000012913	SMG6	83	52.960	Microcebus_murinus
ENSFHEG00000013282	smg6	100	63.368	ENSMMOG00000010883	smg6	100	63.884	Mola_mola
ENSFHEG00000013282	smg6	79	53.144	ENSMODG00000010622	SMG6	87	52.849	Monodelphis_domestica
ENSFHEG00000013282	smg6	100	66.942	ENSMALG00000001106	smg6	100	67.998	Monopterus_albus
ENSFHEG00000013282	smg6	74	53.162	MGP_CAROLIEiJ_G0016729	Smg6	87	68.571	Mus_caroli
ENSFHEG00000013282	smg6	74	53.349	ENSMUSG00000038290	Smg6	87	68.889	Mus_musculus
ENSFHEG00000013282	smg6	86	52.891	MGP_PahariEiJ_G0017866	Smg6	87	68.571	Mus_pahari
ENSFHEG00000013282	smg6	74	53.271	MGP_SPRETEiJ_G0017572	Smg6	87	68.571	Mus_spretus
ENSFHEG00000013282	smg6	75	53.738	ENSMPUG00000013046	SMG6	83	53.235	Mustela_putorius_furo
ENSFHEG00000013282	smg6	75	53.762	ENSMLUG00000005739	SMG6	83	53.333	Myotis_lucifugus
ENSFHEG00000013282	smg6	74	53.271	ENSNGAG00000007287	Smg6	90	54.348	Nannospalax_galili
ENSFHEG00000013282	smg6	97	67.037	ENSNBRG00000009511	smg6	100	66.852	Neolamprologus_brichardi
ENSFHEG00000013282	smg6	75	53.266	ENSNLEG00000017171	SMG6	100	56.307	Nomascus_leucogenys
ENSFHEG00000013282	smg6	76	53.952	ENSMEUG00000015804	SMG6	88	53.533	Notamacropus_eugenii
ENSFHEG00000013282	smg6	52	62.304	ENSOPRG00000000579	SMG6	79	62.500	Ochotona_princeps
ENSFHEG00000013282	smg6	89	46.491	ENSODEG00000008038	SMG6	98	46.712	Octodon_degus
ENSFHEG00000013282	smg6	100	68.701	ENSONIG00000005594	smg6	100	74.189	Oreochromis_niloticus
ENSFHEG00000013282	smg6	75	53.463	ENSOCUG00000013018	SMG6	83	52.955	Oryctolagus_cuniculus
ENSFHEG00000013282	smg6	100	66.827	ENSORLG00000003317	smg6	100	67.489	Oryzias_latipes
ENSFHEG00000013282	smg6	100	67.008	ENSORLG00020015343	smg6	100	67.431	Oryzias_latipes_hni
ENSFHEG00000013282	smg6	100	66.988	ENSORLG00015020454	smg6	100	67.651	Oryzias_latipes_hsok
ENSFHEG00000013282	smg6	100	67.470	ENSOMEG00000010838	smg6	100	67.730	Oryzias_melastigma
ENSFHEG00000013282	smg6	75	53.162	ENSOGAG00000004483	SMG6	83	52.763	Otolemur_garnettii
ENSFHEG00000013282	smg6	75	54.092	ENSOARG00000015076	SMG6	85	53.468	Ovis_aries
ENSFHEG00000013282	smg6	75	53.110	ENSPPAG00000043296	SMG6	83	52.685	Pan_paniscus
ENSFHEG00000013282	smg6	75	53.438	ENSPPRG00000014581	SMG6	83	53.203	Panthera_pardus
ENSFHEG00000013282	smg6	75	53.438	ENSPTIG00000008925	SMG6	100	56.673	Panthera_tigris_altaica
ENSFHEG00000013282	smg6	75	53.390	ENSPTRG00000008544	SMG6	100	56.307	Pan_troglodytes
ENSFHEG00000013282	smg6	75	53.427	ENSPANG00000024588	SMG6	83	53.271	Papio_anubis
ENSFHEG00000013282	smg6	67	52.007	ENSPSIG00000006660	SMG6	81	51.396	Pelodiscus_sinensis
ENSFHEG00000013282	smg6	95	76.431	ENSPMGG00000000844	smg6	99	76.567	Periophthalmus_magnuspinnatus
ENSFHEG00000013282	smg6	74	53.660	ENSPEMG00000020707	Smg6	92	54.825	Peromyscus_maniculatus_bairdii
ENSFHEG00000013282	smg6	100	86.347	ENSPFOG00000012035	smg6	99	87.126	Poecilia_formosa
ENSFHEG00000013282	smg6	100	86.285	ENSPLAG00000017660	smg6	100	85.363	Poecilia_latipinna
ENSFHEG00000013282	smg6	100	86.347	ENSPMEG00000000258	smg6	100	85.424	Poecilia_mexicana
ENSFHEG00000013282	smg6	100	85.732	ENSPREG00000010066	smg6	100	85.547	Poecilia_reticulata
ENSFHEG00000013282	smg6	75	49.071	ENSPPYG00000007790	SMG6	83	48.607	Pongo_abelii
ENSFHEG00000013282	smg6	71	58.503	ENSPCAG00000000552	SMG6	79	58.014	Procavia_capensis
ENSFHEG00000013282	smg6	75	53.230	ENSPCOG00000020925	SMG6	83	52.960	Propithecus_coquereli
ENSFHEG00000013282	smg6	71	61.175	ENSPVAG00000002159	SMG6	76	60.870	Pteropus_vampyrus
ENSFHEG00000013282	smg6	93	66.108	ENSPNYG00000024151	smg6	99	68.543	Pundamilia_nyererei
ENSFHEG00000013282	smg6	75	58.819	ENSPNAG00000015480	smg6	98	69.844	Pygocentrus_nattereri
ENSFHEG00000013282	smg6	74	53.313	ENSRNOG00000003041	Smg6	87	68.571	Rattus_norvegicus
ENSFHEG00000013282	smg6	75	53.427	ENSRBIG00000024746	SMG6	83	53.427	Rhinopithecus_bieti
ENSFHEG00000013282	smg6	75	53.427	ENSRROG00000030423	SMG6	100	56.673	Rhinopithecus_roxellana
ENSFHEG00000013282	smg6	75	53.162	ENSSBOG00000022518	SMG6	83	51.286	Saimiri_boliviensis_boliviensis
ENSFHEG00000013282	smg6	76	53.601	ENSSHAG00000010045	SMG6	86	53.288	Sarcophilus_harrisii
ENSFHEG00000013282	smg6	100	50.557	ENSSFOG00015005436	smg6	100	50.890	Scleropages_formosus
ENSFHEG00000013282	smg6	100	68.810	ENSSMAG00000019777	smg6	100	68.631	Scophthalmus_maximus
ENSFHEG00000013282	smg6	100	71.352	ENSSDUG00000016412	smg6	100	71.769	Seriola_dumerili
ENSFHEG00000013282	smg6	90	71.616	ENSSLDG00000020747	smg6	98	71.682	Seriola_lalandi_dorsalis
ENSFHEG00000013282	smg6	74	53.470	ENSSPUG00000007152	SMG6	83	53.228	Sphenodon_punctatus
ENSFHEG00000013282	smg6	100	71.867	ENSSPAG00000015633	smg6	100	72.453	Stegastes_partitus
ENSFHEG00000013282	smg6	75	53.780	ENSSSCG00000017826	SMG6	83	53.276	Sus_scrofa
ENSFHEG00000013282	smg6	78	52.395	ENSTGUG00000005836	SMG6	88	51.711	Taeniopygia_guttata
ENSFHEG00000013282	smg6	93	65.299	ENSTRUG00000000358	smg6	98	65.733	Takifugu_rubripes
ENSFHEG00000013282	smg6	93	73.762	ENSTNIG00000016164	smg6	100	73.762	Tetraodon_nigroviridis
ENSFHEG00000013282	smg6	75	50.901	ENSTBEG00000011424	SMG6	83	50.549	Tupaia_belangeri
ENSFHEG00000013282	smg6	66	55.540	ENSTTRG00000001175	SMG6	74	54.610	Tursiops_truncatus
ENSFHEG00000013282	smg6	75	53.535	ENSUAMG00000025152	SMG6	85	53.064	Ursus_americanus
ENSFHEG00000013282	smg6	75	53.552	ENSUMAG00000009306	SMG6	85	53.157	Ursus_maritimus
ENSFHEG00000013282	smg6	60	91.667	ENSVPAG00000000225	SMG6	70	91.667	Vicugna_pacos
ENSFHEG00000013282	smg6	75	53.994	ENSVVUG00000021727	SMG6	84	53.662	Vulpes_vulpes
ENSFHEG00000013282	smg6	98	83.260	ENSXCOG00000009867	smg6	99	82.320	Xiphophorus_couchianus
ENSFHEG00000013282	smg6	100	86.162	ENSXMAG00000010321	smg6	100	85.301	Xiphophorus_maculatus