EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000013738 (Gene tree)
Gene ID: -
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 13366 bases
Position: chrKN805945.1:159323-172688
Accession: 105919345
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000011953	RNA_bind	PF08675.11	1.3e-33	1	1
ENSFHEP00000028985	RNA_bind	PF08675.11	1.3e-33	1	1
ENSFHEP00000028985	CAF1	PF04857.20	1.3e-69	1	1
ENSFHEP00000011953	CAF1	PF04857.20	2.2e-65	1	2
ENSFHEP00000011953	CAF1	PF04857.20	2.2e-65	2	2
ENSFHEP00000011997	CAF1	PF04857.20	1.2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000019137	-	1920	XM_021311773	ENSFHEP00000028985	639 (aa)	XP_021167448	-
ENSFHET00000031808	-	195	-	ENSFHEP00000011997	64 (aa)	-	-
ENSFHET00000031800	-	1857	-	ENSFHEP00000011953	618 (aa)	-	-

Gene Model

Click here to download ENSFHEG00000013738's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000013738's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000013738	parn	100	71.875	ENSG00000140694	PARN	98	71.875	Homo_sapiens
ENSFHEG00000013738	parn	92	88.136	ENSAPOG00000019730	-	98	74.359	Acanthochromis_polyacanthus
ENSFHEG00000013738	parn	92	76.271	ENSAMEG00000011208	PARN	83	70.147	Ailuropoda_melanoleuca
ENSFHEG00000013738	parn	92	89.831	ENSACIG00000000619	parn	100	76.526	Amphilophus_citrinellus
ENSFHEG00000013738	parn	92	91.525	ENSAOCG00000003465	parn	86	81.849	Amphiprion_ocellaris
ENSFHEG00000013738	parn	77	81.124	ENSAPEG00000010661	parn	95	81.124	Amphiprion_percula
ENSFHEG00000013738	parn	92	89.831	ENSATEG00000004661	parn	87	80.363	Anabas_testudineus
ENSFHEG00000013738	parn	83	83.019	ENSAPLG00000013914	PARN	92	66.951	Anas_platyrhynchos
ENSFHEG00000013738	parn	92	84.746	ENSACAG00000004973	PARN	90	68.128	Anolis_carolinensis
ENSFHEG00000013738	parn	100	71.875	ENSANAG00000031516	PARN	98	71.875	Aotus_nancymaae
ENSFHEG00000013738	parn	92	91.525	ENSACLG00000004742	parn	88	81.879	Astatotilapia_calliptera
ENSFHEG00000013738	parn	92	84.746	ENSAMXG00000012390	parn	98	66.667	Astyanax_mexicanus
ENSFHEG00000013738	parn	92	76.271	ENSBTAG00000018097	PARN	91	65.472	Bos_taurus
ENSFHEG00000013738	parn	100	71.875	ENSCJAG00000015866	PARN	98	71.875	Callithrix_jacchus
ENSFHEG00000013738	parn	92	76.271	ENSCAFG00000018795	PARN	92	65.275	Canis_familiaris
ENSFHEG00000013738	parn	92	76.271	ENSCAFG00020024126	PARN	92	65.275	Canis_lupus_dingo
ENSFHEG00000013738	parn	92	76.271	ENSCHIG00000018143	PARN	92	66.167	Capra_hircus
ENSFHEG00000013738	parn	72	49.567	ENSCAPG00000007984	PARN	78	49.567	Cavia_aperea
ENSFHEG00000013738	parn	92	77.966	ENSCPOG00000002263	PARN	90	69.479	Cavia_porcellus
ENSFHEG00000013738	parn	100	71.875	ENSCCAG00000030367	PARN	98	71.875	Cebus_capucinus
ENSFHEG00000013738	parn	92	77.966	ENSCATG00000041368	PARN	95	70.275	Cercocebus_atys
ENSFHEG00000013738	parn	92	76.271	ENSCLAG00000015406	PARN	91	67.388	Chinchilla_lanigera
ENSFHEG00000013738	parn	92	77.966	ENSCSAG00000008142	PARN	92	66.722	Chlorocebus_sabaeus
ENSFHEG00000013738	parn	81	78.846	ENSCHOG00000007014	PARN	91	50.085	Choloepus_hoffmanni
ENSFHEG00000013738	parn	79	67.366	ENSCPBG00000006609	PARN	90	67.366	Chrysemys_picta_bellii
ENSFHEG00000013738	parn	89	47.368	ENSCING00000010142	-	99	38.910	Ciona_intestinalis
ENSFHEG00000013738	parn	92	77.966	ENSCANG00000023734	-	97	62.827	Colobus_angolensis_palliatus
ENSFHEG00000013738	parn	92	77.966	ENSCANG00000028849	-	87	79.245	Colobus_angolensis_palliatus
ENSFHEG00000013738	parn	92	74.576	ENSCGRG00001012096	Parn	91	66.440	Cricetulus_griseus_chok1gshd
ENSFHEG00000013738	parn	92	74.576	ENSCGRG00000004939	Parn	91	66.440	Cricetulus_griseus_crigri
ENSFHEG00000013738	parn	92	89.831	ENSCSEG00000002064	parn	95	71.975	Cynoglossus_semilaevis
ENSFHEG00000013738	parn	92	96.610	ENSCVAG00000014848	parn	87	85.354	Cyprinodon_variegatus
ENSFHEG00000013738	parn	92	76.271	ENSDARG00000102634	parn	94	68.817	Danio_rerio
ENSFHEG00000013738	parn	92	76.271	ENSDNOG00000000833	PARN	94	70.275	Dasypus_novemcinctus
ENSFHEG00000013738	parn	92	74.576	ENSDORG00000027812	-	100	57.339	Dipodomys_ordii
ENSFHEG00000013738	parn	92	79.661	ENSETEG00000014828	-	69	67.089	Echinops_telfairi
ENSFHEG00000013738	parn	92	76.271	ENSEASG00005011400	PARN	91	65.997	Equus_asinus_asinus
ENSFHEG00000013738	parn	92	76.271	ENSECAG00000017792	PARN	91	65.829	Equus_caballus
ENSFHEG00000013738	parn	92	76.271	ENSEEUG00000010370	PARN	69	79.630	Erinaceus_europaeus
ENSFHEG00000013738	parn	92	93.220	ENSELUG00000013139	parn	84	69.290	Esox_lucius
ENSFHEG00000013738	parn	92	76.271	ENSFCAG00000044961	PARN	89	76.271	Felis_catus
ENSFHEG00000013738	parn	81	80.769	ENSFALG00000003911	PARN	94	65.410	Ficedula_albicollis
ENSFHEG00000013738	parn	92	77.966	ENSFDAG00000009234	PARN	92	66.833	Fukomys_damarensis
ENSFHEG00000013738	parn	92	94.915	ENSGMOG00000003231	parn	99	76.568	Gadus_morhua
ENSFHEG00000013738	parn	92	84.746	ENSGALG00000003091	PARN	94	66.833	Gallus_gallus
ENSFHEG00000013738	parn	92	96.610	ENSGAFG00000011061	parn	87	86.432	Gambusia_affinis
ENSFHEG00000013738	parn	92	89.831	ENSGACG00000019501	parn	92	75.986	Gasterosteus_aculeatus
ENSFHEG00000013738	parn	100	71.875	ENSGGOG00000025224	PARN	91	79.245	Gorilla_gorilla
ENSFHEG00000013738	parn	92	91.525	ENSHBUG00000017906	parn	93	81.802	Haplochromis_burtoni
ENSFHEG00000013738	parn	92	77.966	ENSHGLG00000010886	PARN	92	66.113	Heterocephalus_glaber_female
ENSFHEG00000013738	parn	92	77.966	ENSHGLG00100014659	PARN	92	66.113	Heterocephalus_glaber_male
ENSFHEG00000013738	parn	81	88.462	ENSHCOG00000008683	parn	95	73.455	Hippocampus_comes
ENSFHEG00000013738	parn	92	81.356	ENSIPUG00000012401	parn	95	56.923	Ictalurus_punctatus
ENSFHEG00000013738	parn	92	76.271	ENSSTOG00000007519	PARN	92	66.110	Ictidomys_tridecemlineatus
ENSFHEG00000013738	parn	92	76.271	ENSJJAG00000023049	Parn	92	65.372	Jaculus_jaculus
ENSFHEG00000013738	parn	92	93.220	ENSKMAG00000009462	parn	88	82.060	Kryptolebias_marmoratus
ENSFHEG00000013738	parn	92	89.831	ENSLBEG00000009167	parn	93	80.067	Labrus_bergylta
ENSFHEG00000013738	parn	80	65.038	ENSLACG00000004207	PARN	99	65.550	Latimeria_chalumnae
ENSFHEG00000013738	parn	92	83.051	ENSLOCG00000000715	parn	88	70.909	Lepisosteus_oculatus
ENSFHEG00000013738	parn	92	76.271	ENSLAFG00000015036	PARN	92	66.047	Loxodonta_africana
ENSFHEG00000013738	parn	92	77.966	ENSMFAG00000044852	PARN	87	79.245	Macaca_fascicularis
ENSFHEG00000013738	parn	92	77.966	ENSMMUG00000018849	PARN	87	79.245	Macaca_mulatta
ENSFHEG00000013738	parn	92	77.966	ENSMNEG00000045108	PARN	87	79.245	Macaca_nemestrina
ENSFHEG00000013738	parn	92	77.966	ENSMLEG00000031743	PARN	87	79.245	Mandrillus_leucophaeus
ENSFHEG00000013738	parn	92	91.525	ENSMAMG00000006939	parn	87	80.705	Mastacembelus_armatus
ENSFHEG00000013738	parn	92	91.525	ENSMZEG00005013590	parn	93	80.071	Maylandia_zebra
ENSFHEG00000013738	parn	88	64.837	ENSMGAG00000001004	PARN	91	64.837	Meleagris_gallopavo
ENSFHEG00000013738	parn	88	60.906	ENSMAUG00000008025	Parn	91	60.906	Mesocricetus_auratus
ENSFHEG00000013738	parn	100	70.312	ENSMICG00000016053	PARN	98	70.312	Microcebus_murinus
ENSFHEG00000013738	parn	92	74.576	ENSMOCG00000022211	Parn	100	70.833	Microtus_ochrogaster
ENSFHEG00000013738	parn	92	91.525	ENSMMOG00000011333	parn	90	78.843	Mola_mola
ENSFHEG00000013738	parn	92	77.966	ENSMODG00000004915	PARN	99	74.648	Monodelphis_domestica
ENSFHEG00000013738	parn	92	85.000	ENSMALG00000019426	parn	94	81.227	Monopterus_albus
ENSFHEG00000013738	parn	92	74.576	MGP_CAROLIEiJ_G0020466	Parn	91	65.254	Mus_caroli
ENSFHEG00000013738	parn	92	72.881	ENSMUSG00000022685	Parn	100	74.390	Mus_musculus
ENSFHEG00000013738	parn	92	74.576	MGP_PahariEiJ_G0016172	Parn	86	67.321	Mus_pahari
ENSFHEG00000013738	parn	92	74.576	MGP_SPRETEiJ_G0021361	Parn	91	65.417	Mus_spretus
ENSFHEG00000013738	parn	92	76.271	ENSMPUG00000014464	PARN	92	66.279	Mustela_putorius_furo
ENSFHEG00000013738	parn	92	74.576	ENSMLUG00000005414	PARN	100	70.040	Myotis_lucifugus
ENSFHEG00000013738	parn	92	76.271	ENSNGAG00000024082	-	100	57.143	Nannospalax_galili
ENSFHEG00000013738	parn	92	91.525	ENSNBRG00000006805	parn	93	80.214	Neolamprologus_brichardi
ENSFHEG00000013738	parn	100	71.875	ENSNLEG00000010241	PARN	98	71.875	Nomascus_leucogenys
ENSFHEG00000013738	parn	81	80.769	ENSMEUG00000008178	-	66	84.286	Notamacropus_eugenii
ENSFHEG00000013738	parn	81	78.846	ENSOPRG00000012187	PARN	91	61.765	Ochotona_princeps
ENSFHEG00000013738	parn	92	77.966	ENSODEG00000001617	PARN	91	66.028	Octodon_degus
ENSFHEG00000013738	parn	92	91.525	ENSONIG00000000151	parn	87	82.107	Oreochromis_niloticus
ENSFHEG00000013738	parn	83	77.358	ENSOCUG00000000322	PARN	92	66.610	Oryctolagus_cuniculus
ENSFHEG00000013738	parn	100	85.938	ENSORLG00000024893	-	100	71.889	Oryzias_latipes
ENSFHEG00000013738	parn	92	91.525	ENSORLG00020010313	parn	88	79.070	Oryzias_latipes_hni
ENSFHEG00000013738	parn	92	91.525	ENSORLG00015000300	parn	88	79.236	Oryzias_latipes_hsok
ENSFHEG00000013738	parn	92	89.831	ENSOMEG00000019555	parn	97	71.889	Oryzias_melastigma
ENSFHEG00000013738	parn	92	77.966	ENSOGAG00000014626	PARN	100	69.703	Otolemur_garnettii
ENSFHEG00000013738	parn	92	76.271	ENSOARG00000007574	PARN	100	71.627	Ovis_aries
ENSFHEG00000013738	parn	100	71.875	ENSPPAG00000031438	PARN	98	71.875	Pan_paniscus
ENSFHEG00000013738	parn	92	76.271	ENSPPRG00000018583	PARN	89	76.271	Panthera_pardus
ENSFHEG00000013738	parn	92	76.271	ENSPTIG00000012135	PARN	89	76.271	Panthera_tigris_altaica
ENSFHEG00000013738	parn	100	71.875	ENSPTRG00000007792	PARN	98	71.875	Pan_troglodytes
ENSFHEG00000013738	parn	92	77.966	ENSPANG00000020099	PARN	87	79.245	Papio_anubis
ENSFHEG00000013738	parn	92	83.051	ENSPKIG00000022807	parn	91	68.213	Paramormyrops_kingsleyae
ENSFHEG00000013738	parn	92	79.661	ENSPSIG00000014804	PARN	91	68.205	Pelodiscus_sinensis
ENSFHEG00000013738	parn	92	81.356	ENSPMGG00000014431	parn	85	71.498	Periophthalmus_magnuspinnatus
ENSFHEG00000013738	parn	92	74.576	ENSPEMG00000018439	Parn	98	60.781	Peromyscus_maniculatus_bairdii
ENSFHEG00000013738	parn	92	66.102	ENSPMAG00000003956	parn	98	62.879	Petromyzon_marinus
ENSFHEG00000013738	parn	100	71.875	ENSPCIG00000001259	PARN	98	71.875	Phascolarctos_cinereus
ENSFHEG00000013738	parn	92	96.610	ENSPFOG00000012823	parn	87	86.555	Poecilia_formosa
ENSFHEG00000013738	parn	92	96.610	ENSPLAG00000006395	parn	87	86.723	Poecilia_latipinna
ENSFHEG00000013738	parn	92	96.610	ENSPMEG00000007711	parn	87	87.059	Poecilia_mexicana
ENSFHEG00000013738	parn	92	96.610	ENSPREG00000000147	parn	87	86.891	Poecilia_reticulata
ENSFHEG00000013738	parn	92	76.271	ENSPPYG00000007123	PARN	92	66.003	Pongo_abelii
ENSFHEG00000013738	parn	84	56.912	ENSPCAG00000001741	PARN	91	56.912	Procavia_capensis
ENSFHEG00000013738	parn	100	70.312	ENSPCOG00000019292	PARN	98	70.312	Propithecus_coquereli
ENSFHEG00000013738	parn	81	78.846	ENSPVAG00000002547	PARN	92	63.465	Pteropus_vampyrus
ENSFHEG00000013738	parn	92	91.525	ENSPNYG00000006835	parn	93	77.660	Pundamilia_nyererei
ENSFHEG00000013738	parn	86	69.162	ENSPNAG00000018905	parn	90	69.162	Pygocentrus_nattereri
ENSFHEG00000013738	parn	92	74.576	ENSRNOG00000002912	Parn	89	65.494	Rattus_norvegicus
ENSFHEG00000013738	parn	92	77.966	ENSRROG00000020116	-	86	77.049	Rhinopithecus_roxellana
ENSFHEG00000013738	parn	92	77.966	ENSSBOG00000034726	PARN	87	79.245	Saimiri_boliviensis_boliviensis
ENSFHEG00000013738	parn	83	79.245	ENSSHAG00000008493	PARN	94	71.905	Sarcophilus_harrisii
ENSFHEG00000013738	parn	92	84.746	ENSSFOG00015014165	parn	98	68.317	Scleropages_formosus
ENSFHEG00000013738	parn	92	84.746	ENSSMAG00000000685	parn	90	73.192	Scophthalmus_maximus
ENSFHEG00000013738	parn	92	89.831	ENSSDUG00000014555	parn	87	81.271	Seriola_dumerili
ENSFHEG00000013738	parn	92	89.831	ENSSLDG00000007603	-	97	73.016	Seriola_lalandi_dorsalis
ENSFHEG00000013738	parn	67	71.171	ENSSARG00000014339	PARN	75	71.494	Sorex_araneus
ENSFHEG00000013738	parn	92	81.356	ENSSPUG00000007719	PARN	92	66.779	Sphenodon_punctatus
ENSFHEG00000013738	parn	92	91.525	ENSSPAG00000007095	parn	87	82.185	Stegastes_partitus
ENSFHEG00000013738	parn	92	76.271	ENSSSCG00000007878	PARN	82	66.110	Sus_scrofa
ENSFHEG00000013738	parn	83	81.132	ENSTGUG00000004971	PARN	95	65.303	Taeniopygia_guttata
ENSFHEG00000013738	parn	89	84.211	ENSTRUG00000015208	-	94	81.707	Takifugu_rubripes
ENSFHEG00000013738	parn	92	89.831	ENSTNIG00000008252	parn	90	78.125	Tetraodon_nigroviridis
ENSFHEG00000013738	parn	80	57.358	ENSTBEG00000010407	PARN	91	57.736	Tupaia_belangeri
ENSFHEG00000013738	parn	81	78.846	ENSTTRG00000002843	PARN	77	71.663	Tursiops_truncatus
ENSFHEG00000013738	parn	67	61.798	ENSUAMG00000008283	PARN	94	58.581	Ursus_americanus
ENSFHEG00000013738	parn	92	76.271	ENSUMAG00000004527	PARN	92	65.943	Ursus_maritimus
ENSFHEG00000013738	parn	81	78.846	ENSVPAG00000008968	PARN	94	63.636	Vicugna_pacos
ENSFHEG00000013738	parn	92	76.271	ENSVVUG00000019509	PARN	92	65.442	Vulpes_vulpes
ENSFHEG00000013738	parn	92	81.356	ENSXETG00000010994	parn	100	69.245	Xenopus_tropicalis
ENSFHEG00000013738	parn	92	96.610	ENSXCOG00000015990	parn	100	81.681	Xiphophorus_couchianus
ENSFHEG00000013738	parn	92	96.610	ENSXMAG00000014783	parn	87	86.723	Xiphophorus_maculatus