EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000013939 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 24797 bases
Position: chrKN811471.1:885687-910483
Accession: 105936043
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000029162	EST1	PF10374.9	4.3e-24	1	1
ENSFHEP00000012234	EST1	PF10374.9	5.1e-24	1	1
ENSFHEP00000029162	EST1_DNA_bind	PF10373.9	1.3e-37	1	1
ENSFHEP00000012234	EST1_DNA_bind	PF10373.9	1.6e-37	1	1
ENSFHEP00000029162	PIN_4	PF13638.6	1.1e-05	1	1
ENSFHEP00000012234	PIN_4	PF13638.6	1.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000031910	-	3168	-	ENSFHEP00000012234	1055 (aa)	-	-
ENSFHET00000031934	-	2778	XM_021323638	ENSFHEP00000029162	925 (aa)	XP_021179313	-

Gene Model

Click here to download ENSFHEG00000013939's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000013939's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000013939	smg5	95	68.301	ENSG00000198952	SMG5	97	62.159	Homo_sapiens
ENSFHEG00000013939	smg5	94	91.746	ENSAPOG00000019690	smg5	98	78.269	Acanthochromis_polyacanthus
ENSFHEG00000013939	smg5	94	66.134	ENSAMEG00000014458	SMG5	99	60.966	Ailuropoda_melanoleuca
ENSFHEG00000013939	smg5	98	78.433	ENSACIG00000001353	smg5	94	79.552	Amphilophus_citrinellus
ENSFHEG00000013939	smg5	94	91.429	ENSAOCG00000019483	smg5	98	78.824	Amphiprion_ocellaris
ENSFHEG00000013939	smg5	94	91.429	ENSAPEG00000022949	smg5	98	78.733	Amphiprion_percula
ENSFHEG00000013939	smg5	94	90.476	ENSATEG00000005348	smg5	94	80.698	Anabas_testudineus
ENSFHEG00000013939	smg5	98	61.493	ENSAPLG00000010263	SMG5	97	61.294	Anas_platyrhynchos
ENSFHEG00000013939	smg5	95	68.301	ENSANAG00000032899	SMG5	98	62.336	Aotus_nancymaae
ENSFHEG00000013939	smg5	95	90.794	ENSACLG00000009311	smg5	86	90.794	Astatotilapia_calliptera
ENSFHEG00000013939	smg5	95	86.349	ENSAMXG00000024616	smg5	85	86.349	Astyanax_mexicanus
ENSFHEG00000013939	smg5	95	68.051	ENSBTAG00000009435	SMG5	97	61.910	Bos_taurus
ENSFHEG00000013939	smg5	98	39.406	ENSBTAG00000021747	-	88	53.760	Bos_taurus
ENSFHEG00000013939	smg5	95	68.371	ENSCJAG00000005684	SMG5	97	62.336	Callithrix_jacchus
ENSFHEG00000013939	smg5	95	68.541	ENSCAFG00000016839	SMG5	97	61.958	Canis_familiaris
ENSFHEG00000013939	smg5	95	68.541	ENSCAFG00020006061	SMG5	97	61.958	Canis_lupus_dingo
ENSFHEG00000013939	smg5	95	68.051	ENSCHIG00000007709	SMG5	97	61.638	Capra_hircus
ENSFHEG00000013939	smg5	98	39.202	ENSCHIG00000006323	-	88	53.911	Capra_hircus
ENSFHEG00000013939	smg5	95	68.182	ENSTSYG00000004099	SMG5	97	62.312	Carlito_syrichta
ENSFHEG00000013939	smg5	100	53.701	ENSCAPG00000003631	SMG5	100	50.104	Cavia_aperea
ENSFHEG00000013939	smg5	95	68.690	ENSCPOG00000015696	SMG5	97	62.399	Cavia_porcellus
ENSFHEG00000013939	smg5	95	68.293	ENSCCAG00000027409	SMG5	98	62.374	Cebus_capucinus
ENSFHEG00000013939	smg5	95	68.476	ENSCATG00000030539	SMG5	97	62.513	Cercocebus_atys
ENSFHEG00000013939	smg5	95	67.732	ENSCLAG00000003983	SMG5	97	62.198	Chinchilla_lanigera
ENSFHEG00000013939	smg5	95	68.476	ENSCSAG00000002120	SMG5	97	62.260	Chlorocebus_sabaeus
ENSFHEG00000013939	smg5	52	71.910	ENSCHOG00000008741	-	53	75.102	Choloepus_hoffmanni
ENSFHEG00000013939	smg5	97	60.481	ENSCPBG00000025848	SMG5	100	61.416	Chrysemys_picta_bellii
ENSFHEG00000013939	smg5	85	40.000	ENSCING00000008706	-	82	40.000	Ciona_intestinalis
ENSFHEG00000013939	smg5	95	67.487	ENSCANG00000029208	SMG5	97	59.639	Colobus_angolensis_palliatus
ENSFHEG00000013939	smg5	95	68.690	ENSCGRG00001006336	Smg5	97	62.500	Cricetulus_griseus_chok1gshd
ENSFHEG00000013939	smg5	95	68.690	ENSCGRG00000005111	Smg5	99	62.500	Cricetulus_griseus_crigri
ENSFHEG00000013939	smg5	93	87.302	ENSCSEG00000014220	smg5	86	87.302	Cynoglossus_semilaevis
ENSFHEG00000013939	smg5	98	75.470	ENSCVAG00000000529	smg5	94	76.305	Cyprinodon_variegatus
ENSFHEG00000013939	smg5	95	84.444	ENSDARG00000041481	smg5	86	84.713	Danio_rerio
ENSFHEG00000013939	smg5	100	59.334	ENSDNOG00000000051	SMG5	97	59.073	Dasypus_novemcinctus
ENSFHEG00000013939	smg5	93	30.486	ENSDNOG00000039862	-	97	30.270	Dasypus_novemcinctus
ENSFHEG00000013939	smg5	100	61.212	ENSDORG00000010382	Smg5	97	61.857	Dipodomys_ordii
ENSFHEG00000013939	smg5	73	83.495	ENSETEG00000010336	SMG5	74	83.495	Echinops_telfairi
ENSFHEG00000013939	smg5	90	45.216	ENSEBUG00000003739	smg5	94	45.465	Eptatretus_burgeri
ENSFHEG00000013939	smg5	95	67.732	ENSEASG00005019122	SMG5	97	61.430	Equus_asinus_asinus
ENSFHEG00000013939	smg5	95	67.732	ENSECAG00000001389	SMG5	97	61.329	Equus_caballus
ENSFHEG00000013939	smg5	71	76.163	ENSEEUG00000012690	SMG5	66	75.581	Erinaceus_europaeus
ENSFHEG00000013939	smg5	95	86.076	ENSELUG00000012585	smg5	86	86.076	Esox_lucius
ENSFHEG00000013939	smg5	96	67.581	ENSFCAG00000011783	SMG5	97	61.476	Felis_catus
ENSFHEG00000013939	smg5	59	70.090	ENSFALG00000001166	-	95	66.434	Ficedula_albicollis
ENSFHEG00000013939	smg5	95	68.126	ENSFDAG00000017388	SMG5	99	61.818	Fukomys_damarensis
ENSFHEG00000013939	smg5	93	86.667	ENSGMOG00000007310	smg5	85	86.667	Gadus_morhua
ENSFHEG00000013939	smg5	98	61.416	ENSGALG00000029918	-	95	61.216	Gallus_gallus
ENSFHEG00000013939	smg5	96	86.732	ENSGAFG00000021691	smg5	98	84.637	Gambusia_affinis
ENSFHEG00000013939	smg5	99	74.819	ENSGACG00000013142	smg5	98	75.271	Gasterosteus_aculeatus
ENSFHEG00000013939	smg5	98	61.957	ENSGAGG00000016131	SMG5	94	61.858	Gopherus_agassizii
ENSFHEG00000013939	smg5	95	68.051	ENSGGOG00000010932	SMG5	97	61.958	Gorilla_gorilla
ENSFHEG00000013939	smg5	94	91.429	ENSHBUG00000008654	smg5	98	77.687	Haplochromis_burtoni
ENSFHEG00000013939	smg5	95	66.773	ENSHGLG00000019152	SMG5	97	60.786	Heterocephalus_glaber_female
ENSFHEG00000013939	smg5	85	70.561	ENSHGLG00100015948	SMG5	96	60.918	Heterocephalus_glaber_male
ENSFHEG00000013939	smg5	98	65.066	ENSHCOG00000010229	smg5	92	79.845	Hippocampus_comes
ENSFHEG00000013939	smg5	95	83.175	ENSIPUG00000006624	Smg5	86	83.175	Ictalurus_punctatus
ENSFHEG00000013939	smg5	95	67.732	ENSSTOG00000001780	SMG5	97	62.298	Ictidomys_tridecemlineatus
ENSFHEG00000013939	smg5	100	61.771	ENSJJAG00000022763	Smg5	97	61.871	Jaculus_jaculus
ENSFHEG00000013939	smg5	94	92.381	ENSKMAG00000014586	smg5	98	79.566	Kryptolebias_marmoratus
ENSFHEG00000013939	smg5	94	90.476	ENSLBEG00000002145	smg5	86	90.476	Labrus_bergylta
ENSFHEG00000013939	smg5	98	56.461	ENSLACG00000010521	SMG5	95	57.186	Latimeria_chalumnae
ENSFHEG00000013939	smg5	93	85.366	ENSLOCG00000008380	smg5	93	66.780	Lepisosteus_oculatus
ENSFHEG00000013939	smg5	100	61.577	ENSLAFG00000006241	SMG5	97	61.430	Loxodonta_africana
ENSFHEG00000013939	smg5	95	68.476	ENSMFAG00000045357	SMG5	97	62.260	Macaca_fascicularis
ENSFHEG00000013939	smg5	95	69.069	ENSMMUG00000000090	SMG5	97	62.588	Macaca_mulatta
ENSFHEG00000013939	smg5	95	68.476	ENSMNEG00000044425	SMG5	97	62.159	Macaca_nemestrina
ENSFHEG00000013939	smg5	93	61.589	ENSMLEG00000041192	SMG5	95	60.084	Mandrillus_leucophaeus
ENSFHEG00000013939	smg5	95	89.524	ENSMAMG00000010683	smg5	90	89.524	Mastacembelus_armatus
ENSFHEG00000013939	smg5	98	75.410	ENSMZEG00005015815	smg5	94	76.332	Maylandia_zebra
ENSFHEG00000013939	smg5	62	70.661	ENSMZEG00005016543	smg5	100	71.933	Maylandia_zebra
ENSFHEG00000013939	smg5	100	62.702	ENSMAUG00000010381	Smg5	97	62.399	Mesocricetus_auratus
ENSFHEG00000013939	smg5	59	40.378	ENSMAUG00000000043	-	94	42.328	Mesocricetus_auratus
ENSFHEG00000013939	smg5	95	68.070	ENSMICG00000002257	SMG5	97	62.034	Microcebus_murinus
ENSFHEG00000013939	smg5	54	45.652	ENSMOCG00000008423	-	84	45.000	Microtus_ochrogaster
ENSFHEG00000013939	smg5	95	68.690	ENSMOCG00000016590	Smg5	97	61.662	Microtus_ochrogaster
ENSFHEG00000013939	smg5	96	76.128	ENSMMOG00000017199	smg5	98	74.795	Mola_mola
ENSFHEG00000013939	smg5	61	40.838	ENSMODG00000004532	-	66	40.500	Monodelphis_domestica
ENSFHEG00000013939	smg5	74	35.294	ENSMODG00000004511	-	69	35.677	Monodelphis_domestica
ENSFHEG00000013939	smg5	77	33.227	ENSMODG00000010675	-	78	33.227	Monodelphis_domestica
ENSFHEG00000013939	smg5	86	60.581	ENSMODG00000016901	SMG5	94	60.465	Monodelphis_domestica
ENSFHEG00000013939	smg5	73	34.783	ENSMODG00000004735	-	76	34.511	Monodelphis_domestica
ENSFHEG00000013939	smg5	96	76.498	ENSMALG00000010375	smg5	95	76.101	Monopterus_albus
ENSFHEG00000013939	smg5	100	61.554	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSFHEG00000013939	smg5	100	61.756	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSFHEG00000013939	smg5	100	62.173	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSFHEG00000013939	smg5	100	61.655	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSFHEG00000013939	smg5	91	68.284	ENSMPUG00000004546	SMG5	100	62.044	Mustela_putorius_furo
ENSFHEG00000013939	smg5	95	68.357	ENSMLUG00000008518	SMG5	97	61.608	Myotis_lucifugus
ENSFHEG00000013939	smg5	95	68.051	ENSNGAG00000020706	Smg5	97	61.794	Nannospalax_galili
ENSFHEG00000013939	smg5	98	37.216	ENSNGAG00000012101	-	91	50.623	Nannospalax_galili
ENSFHEG00000013939	smg5	95	78.149	ENSNBRG00000004332	smg5	92	78.953	Neolamprologus_brichardi
ENSFHEG00000013939	smg5	95	68.476	ENSNLEG00000012439	SMG5	97	62.260	Nomascus_leucogenys
ENSFHEG00000013939	smg5	100	59.717	ENSMEUG00000012834	SMG5	97	59.514	Notamacropus_eugenii
ENSFHEG00000013939	smg5	95	68.301	ENSOPRG00000009152	SMG5	97	62.010	Ochotona_princeps
ENSFHEG00000013939	smg5	100	62.159	ENSODEG00000012237	SMG5	97	61.616	Octodon_degus
ENSFHEG00000013939	smg5	94	91.111	ENSONIG00000008632	smg5	98	76.965	Oreochromis_niloticus
ENSFHEG00000013939	smg5	88	35.941	ENSOCUG00000023338	-	89	46.950	Oryctolagus_cuniculus
ENSFHEG00000013939	smg5	95	68.827	ENSOCUG00000012886	SMG5	99	62.462	Oryctolagus_cuniculus
ENSFHEG00000013939	smg5	95	87.227	ENSORLG00000016239	smg5	98	76.109	Oryzias_latipes
ENSFHEG00000013939	smg5	95	87.227	ENSORLG00020013127	smg5	98	76.178	Oryzias_latipes_hni
ENSFHEG00000013939	smg5	95	87.539	ENSORLG00015019014	smg5	98	76.359	Oryzias_latipes_hsok
ENSFHEG00000013939	smg5	76	84.286	ENSOMEG00000021330	smg5	90	73.730	Oryzias_melastigma
ENSFHEG00000013939	smg5	95	67.093	ENSOGAG00000004966	SMG5	97	61.794	Otolemur_garnettii
ENSFHEG00000013939	smg5	95	68.051	ENSOARG00000005778	SMG5	97	61.538	Ovis_aries
ENSFHEG00000013939	smg5	98	39.206	ENSOARG00000011963	-	88	54.039	Ovis_aries
ENSFHEG00000013939	smg5	95	68.301	ENSPPAG00000011996	SMG5	97	62.059	Pan_paniscus
ENSFHEG00000013939	smg5	96	67.753	ENSPPRG00000011901	SMG5	99	61.476	Panthera_pardus
ENSFHEG00000013939	smg5	99	61.392	ENSPTIG00000007892	SMG5	97	61.498	Panthera_tigris_altaica
ENSFHEG00000013939	smg5	95	68.301	ENSPTRG00000049282	-	97	62.059	Pan_troglodytes
ENSFHEG00000013939	smg5	95	68.301	ENSPTRG00000023925	SMG5	97	62.059	Pan_troglodytes
ENSFHEG00000013939	smg5	95	68.476	ENSPANG00000011201	SMG5	97	62.260	Papio_anubis
ENSFHEG00000013939	smg5	98	71.014	ENSPKIG00000009402	smg5	95	69.991	Paramormyrops_kingsleyae
ENSFHEG00000013939	smg5	98	62.588	ENSPSIG00000015198	SMG5	97	62.487	Pelodiscus_sinensis
ENSFHEG00000013939	smg5	98	68.137	ENSPMGG00000010465	smg5	95	68.077	Periophthalmus_magnuspinnatus
ENSFHEG00000013939	smg5	95	68.827	ENSPEMG00000001819	Smg5	97	62.500	Peromyscus_maniculatus_bairdii
ENSFHEG00000013939	smg5	60	40.917	ENSPEMG00000010022	-	93	40.870	Peromyscus_maniculatus_bairdii
ENSFHEG00000013939	smg5	85	60.152	ENSPMAG00000000410	smg5	95	44.925	Petromyzon_marinus
ENSFHEG00000013939	smg5	100	60.808	ENSPCIG00000018938	SMG5	97	60.808	Phascolarctos_cinereus
ENSFHEG00000013939	smg5	94	93.968	ENSPFOG00000010191	smg5	98	82.208	Poecilia_formosa
ENSFHEG00000013939	smg5	94	93.968	ENSPLAG00000009332	smg5	98	82.208	Poecilia_latipinna
ENSFHEG00000013939	smg5	94	94.286	ENSPMEG00000014105	smg5	86	94.286	Poecilia_mexicana
ENSFHEG00000013939	smg5	94	94.286	ENSPREG00000017713	smg5	98	82.755	Poecilia_reticulata
ENSFHEG00000013939	smg5	95	68.301	ENSPPYG00000000723	SMG5	97	62.159	Pongo_abelii
ENSFHEG00000013939	smg5	66	88.268	ENSPCAG00000008412	SMG5	69	88.268	Procavia_capensis
ENSFHEG00000013939	smg5	95	68.827	ENSPCOG00000004741	SMG5	97	62.475	Propithecus_coquereli
ENSFHEG00000013939	smg5	95	65.176	ENSPVAG00000016748	SMG5	97	54.728	Pteropus_vampyrus
ENSFHEG00000013939	smg5	94	91.429	ENSPNYG00000013397	smg5	88	91.429	Pundamilia_nyererei
ENSFHEG00000013939	smg5	95	85.079	ENSPNAG00000028363	smg5	87	85.079	Pygocentrus_nattereri
ENSFHEG00000013939	smg5	100	61.554	ENSRNOG00000019590	Smg5	97	62.249	Rattus_norvegicus
ENSFHEG00000013939	smg5	95	68.476	ENSRBIG00000027428	SMG5	97	62.361	Rhinopithecus_bieti
ENSFHEG00000013939	smg5	95	68.476	ENSRROG00000030035	SMG5	97	62.260	Rhinopithecus_roxellana
ENSFHEG00000013939	smg5	95	68.476	ENSSBOG00000033339	SMG5	97	62.437	Saimiri_boliviensis_boliviensis
ENSFHEG00000013939	smg5	51	35.733	ENSSHAG00000000935	-	66	36.486	Sarcophilus_harrisii
ENSFHEG00000013939	smg5	73	36.712	ENSSHAG00000000561	-	94	30.510	Sarcophilus_harrisii
ENSFHEG00000013939	smg5	73	42.897	ENSSHAG00000009572	-	68	42.162	Sarcophilus_harrisii
ENSFHEG00000013939	smg5	100	60.402	ENSSHAG00000014163	SMG5	99	60.743	Sarcophilus_harrisii
ENSFHEG00000013939	smg5	98	73.271	ENSSFOG00015024175	smg5	98	69.399	Scleropages_formosus
ENSFHEG00000013939	smg5	94	88.571	ENSSMAG00000013059	smg5	98	76.833	Scophthalmus_maximus
ENSFHEG00000013939	smg5	94	91.429	ENSSDUG00000007122	smg5	98	77.788	Seriola_dumerili
ENSFHEG00000013939	smg5	94	92.063	ENSSLDG00000011418	smg5	98	78.700	Seriola_lalandi_dorsalis
ENSFHEG00000013939	smg5	84	71.028	ENSSARG00000012484	SMG5	85	71.028	Sorex_araneus
ENSFHEG00000013939	smg5	93	67.732	ENSSPUG00000002260	SMG5	100	58.380	Sphenodon_punctatus
ENSFHEG00000013939	smg5	94	91.429	ENSSPAG00000014266	smg5	98	78.378	Stegastes_partitus
ENSFHEG00000013939	smg5	95	67.732	ENSSSCG00000006490	-	100	62.708	Sus_scrofa
ENSFHEG00000013939	smg5	98	50.640	ENSSSCG00000039308	-	95	49.894	Sus_scrofa
ENSFHEG00000013939	smg5	98	62.679	ENSTGUG00000003748	-	94	62.551	Taeniopygia_guttata
ENSFHEG00000013939	smg5	95	86.709	ENSTRUG00000012580	smg5	86	86.709	Takifugu_rubripes
ENSFHEG00000013939	smg5	95	86.392	ENSTNIG00000010303	smg5	86	86.392	Tetraodon_nigroviridis
ENSFHEG00000013939	smg5	56	83.251	ENSTBEG00000002777	SMG5	50	83.251	Tupaia_belangeri
ENSFHEG00000013939	smg5	93	69.691	ENSTTRG00000001401	SMG5	94	61.157	Tursiops_truncatus
ENSFHEG00000013939	smg5	94	66.773	ENSUAMG00000013721	SMG5	97	61.515	Ursus_americanus
ENSFHEG00000013939	smg5	95	64.974	ENSUMAG00000018041	SMG5	95	71.149	Ursus_maritimus
ENSFHEG00000013939	smg5	85	70.792	ENSVPAG00000009446	SMG5	92	56.928	Vicugna_pacos
ENSFHEG00000013939	smg5	95	68.717	ENSVVUG00000005887	SMG5	97	61.958	Vulpes_vulpes
ENSFHEG00000013939	smg5	78	53.491	ENSXETG00000033791	SMG5	99	53.242	Xenopus_tropicalis
ENSFHEG00000013939	smg5	80	97.253	ENSXCOG00000004379	smg5	97	97.253	Xiphophorus_couchianus
ENSFHEG00000013939	smg5	94	93.968	ENSXMAG00000013499	smg5	98	82.482	Xiphophorus_maculatus