EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000017425 (Gene tree)
Gene ID: 105919822
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1A
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 5565 bases
Position: chrKN805994.1:870774-876338
Accession: 105919822
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000031480	RRM_1	PF00076.22	1.4e-33	1	2
ENSFHEP00000031480	RRM_1	PF00076.22	1.4e-33	2	2
ENSFHEP00000015756	RRM_1	PF00076.22	3.3e-33	1	2
ENSFHEP00000015756	RRM_1	PF00076.22	3.3e-33	2	2
ENSFHEP00000031477	RRM_1	PF00076.22	3.5e-33	1	2
ENSFHEP00000031477	RRM_1	PF00076.22	3.5e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000033323	-	3807	XM_012855229	ENSFHEP00000015756	247 (aa)	XP_012710683	UPI000644A736
ENSFHET00000023963	-	1261	-	ENSFHEP00000031480	190 (aa)	-	-
ENSFHET00000023959	-	3044	-	ENSFHEP00000031477	252 (aa)	-	-

Gene Model

Click here to download ENSFHEG00000017425's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000017425's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000017425	-	91	40.609	ENSFHEG00000003955	srsf5a	98	39.474
ENSFHEG00000017425	-	97	84.865	ENSFHEG00000003174	srsf1a	82	85.714
ENSFHEG00000017425	-	87	45.930	ENSFHEG00000023065	srsf6a	50	43.605
ENSFHEG00000017425	-	87	31.737	ENSFHEG00000014610	-	57	47.297
ENSFHEG00000017425	-	92	64.943	ENSFHEG00000020851	srsf9	74	65.054
ENSFHEG00000017425	-	89	45.402	ENSFHEG00000007472	srsf4	74	44.595
ENSFHEG00000017425	-	64	40.800	ENSFHEG00000007159	srsf7a	66	40.496
ENSFHEG00000017425	-	86	49.711	ENSFHEG00000009476	srsf5b	55	48.023

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000017425	-	98	91.444	ENSACIG00000002623	-	96	91.444	Amphilophus_citrinellus
ENSFHEG00000017425	-	100	90.722	ENSACLG00000021693	-	81	89.655	Astatotilapia_calliptera
ENSFHEG00000017425	-	97	84.324	ENSACLG00000005676	-	77	85.204	Astatotilapia_calliptera
ENSFHEG00000017425	-	93	62.842	WBGene00004700	rsp-3	90	55.365	Caenorhabditis_elegans
ENSFHEG00000017425	-	65	62.205	ENSCING00000000257	-	77	62.143	Ciona_intestinalis
ENSFHEG00000017425	-	92	70.690	ENSCING00000007375	-	76	70.053	Ciona_intestinalis
ENSFHEG00000017425	-	92	70.690	ENSCSAVG00000006093	-	92	68.984	Ciona_savignyi
ENSFHEG00000017425	-	65	59.350	ENSCSAVG00000003567	-	76	59.701	Ciona_savignyi
ENSFHEG00000017425	-	92	66.857	FBgn0283477	SF2	73	67.204	Drosophila_melanogaster
ENSFHEG00000017425	-	98	75.401	ENSEBUG00000009582	-	83	75.377	Eptatretus_burgeri
ENSFHEG00000017425	-	98	85.561	ENSGMOG00000010606	-	97	85.561	Gadus_morhua
ENSFHEG00000017425	-	97	84.865	ENSGAFG00000012721	-	78	85.714	Gambusia_affinis
ENSFHEG00000017425	-	100	97.984	ENSGAFG00000000609	-	99	97.984	Gambusia_affinis
ENSFHEG00000017425	-	97	84.865	ENSGACG00000011094	-	96	85.326	Gasterosteus_aculeatus
ENSFHEG00000017425	-	67	60.156	ENSHBUG00000015600	-	93	59.690	Haplochromis_burtoni
ENSFHEG00000017425	-	98	92.632	ENSHBUG00000015576	-	78	93.564	Haplochromis_burtoni
ENSFHEG00000017425	-	97	80.851	ENSHCOG00000008016	-	78	80.597	Hippocampus_comes
ENSFHEG00000017425	-	97	84.865	ENSMFAG00000034223	-	65	85.279	Macaca_fascicularis
ENSFHEG00000017425	-	97	84.324	ENSMZEG00005007947	-	77	85.204	Maylandia_zebra
ENSFHEG00000017425	-	100	91.667	ENSMZEG00005019071	-	99	91.005	Maylandia_zebra
ENSFHEG00000017425	-	98	88.770	ENSMMOG00000018849	-	79	88.442	Mola_mola
ENSFHEG00000017425	-	98	92.147	ENSNBRG00000008134	-	78	92.611	Neolamprologus_brichardi
ENSFHEG00000017425	-	97	84.324	ENSNBRG00000019981	-	77	85.204	Neolamprologus_brichardi
ENSFHEG00000017425	-	89	64.497	ENSOPRG00000004745	-	96	63.905	Ochotona_princeps
ENSFHEG00000017425	-	98	92.188	ENSONIG00000004857	-	81	92.647	Oreochromis_niloticus
ENSFHEG00000017425	-	65	88.710	ENSOANG00000007320	-	52	94.118	Ornithorhynchus_anatinus
ENSFHEG00000017425	-	93	50.000	ENSOCUG00000026856	-	96	50.000	Oryctolagus_cuniculus
ENSFHEG00000017425	-	98	92.513	ENSORLG00000005314	-	77	93.467	Oryzias_latipes
ENSFHEG00000017425	-	98	92.513	ENSORLG00015015497	-	77	93.467	Oryzias_latipes_hsok
ENSFHEG00000017425	-	98	93.122	ENSOMEG00000017711	-	76	94.030	Oryzias_melastigma
ENSFHEG00000017425	-	97	84.865	ENSPLAG00000019553	-	92	83.511	Poecilia_latipinna
ENSFHEG00000017425	-	97	84.865	ENSPLAG00000019613	-	71	85.326	Poecilia_latipinna
ENSFHEG00000017425	-	100	97.976	ENSPREG00000016792	-	99	97.976	Poecilia_reticulata
ENSFHEG00000017425	-	97	84.324	ENSPNYG00000017115	-	77	85.204	Pundamilia_nyererei
ENSFHEG00000017425	-	100	90.722	ENSPNYG00000020651	-	78	92.611	Pundamilia_nyererei
ENSFHEG00000017425	-	97	87.027	ENSSFOG00015004989	-	70	87.310	Scleropages_formosus
ENSFHEG00000017425	-	97	86.224	ENSSDUG00000003887	-	79	87.500	Seriola_dumerili
ENSFHEG00000017425	-	98	82.888	ENSTRUG00000017058	-	80	84.422	Takifugu_rubripes
ENSFHEG00000017425	-	98	79.787	ENSTNIG00000009993	-	81	81.500	Tetraodon_nigroviridis
ENSFHEG00000017425	-	97	84.865	ENSXCOG00000009643	-	77	85.417	Xiphophorus_couchianus
ENSFHEG00000017425	-	100	98.381	ENSXCOG00000017888	-	99	98.381	Xiphophorus_couchianus
ENSFHEG00000017425	-	100	98.381	ENSXMAG00000010797	-	99	98.381	Xiphophorus_maculatus