EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000017895 (Gene tree)
Gene ID: 105925724
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Minus strand
Length: 7219 bases
Position: chrKN811289.1:1089928-1097146
Accession: 105925724
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000031791	Smg4_UPF3	PF03467.15	9.6e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000024567	-	3686	XM_012861701	ENSFHEP00000031791	459 (aa)	XP_012717155	A0A146X8F3

Gene Model

Click here to download ENSFHEG00000017895's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000017895's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000017895	upf3b	63	63.036	ENSG00000125351	UPF3B	96	66.029	Homo_sapiens
ENSFHEG00000017895	upf3b	88	43.584	ENSG00000169062	UPF3A	50	60.377	Homo_sapiens
ENSFHEG00000017895	upf3b	100	81.304	ENSAPOG00000012775	upf3b	100	81.304	Acanthochromis_polyacanthus
ENSFHEG00000017895	upf3b	93	54.343	ENSAMEG00000000163	UPF3B	93	54.444	Ailuropoda_melanoleuca
ENSFHEG00000017895	upf3b	100	75.054	ENSACIG00000013582	upf3b	100	76.774	Amphilophus_citrinellus
ENSFHEG00000017895	upf3b	100	78.696	ENSAOCG00000000706	upf3b	100	79.783	Amphiprion_ocellaris
ENSFHEG00000017895	upf3b	100	79.565	ENSAPEG00000005545	upf3b	100	80.652	Amphiprion_percula
ENSFHEG00000017895	upf3b	100	80.819	ENSATEG00000018742	upf3b	100	80.819	Anabas_testudineus
ENSFHEG00000017895	upf3b	89	49.880	ENSATEG00000005843	upf3a	51	67.755	Anabas_testudineus
ENSFHEG00000017895	upf3b	91	42.755	ENSACAG00000001540	UPF3A	92	49.254	Anolis_carolinensis
ENSFHEG00000017895	upf3b	93	59.502	ENSACAG00000003625	UPF3B	93	56.463	Anolis_carolinensis
ENSFHEG00000017895	upf3b	96	52.155	ENSANAG00000025598	-	93	49.111	Aotus_nancymaae
ENSFHEG00000017895	upf3b	96	53.247	ENSANAG00000021894	-	97	66.029	Aotus_nancymaae
ENSFHEG00000017895	upf3b	100	80.303	ENSACLG00000001649	upf3b	100	80.303	Astatotilapia_calliptera
ENSFHEG00000017895	upf3b	56	78.462	ENSAMXG00000000199	upf3b	63	81.283	Astyanax_mexicanus
ENSFHEG00000017895	upf3b	56	65.201	ENSBTAG00000035615	UPF3B	68	66.029	Bos_taurus
ENSFHEG00000017895	upf3b	96	54.565	ENSCJAG00000004975	UPF3B	97	65.550	Callithrix_jacchus
ENSFHEG00000017895	upf3b	96	52.609	ENSCAFG00000018426	UPF3B	95	53.778	Canis_familiaris
ENSFHEG00000017895	upf3b	93	51.454	ENSCAFG00020004074	UPF3B	93	51.556	Canis_lupus_dingo
ENSFHEG00000017895	upf3b	96	51.374	ENSCHIG00000000247	-	93	52.288	Capra_hircus
ENSFHEG00000017895	upf3b	96	51.163	ENSCHIG00000018011	-	96	52.070	Capra_hircus
ENSFHEG00000017895	upf3b	96	52.391	ENSTSYG00000014690	UPF3B	96	61.395	Carlito_syrichta
ENSFHEG00000017895	upf3b	92	37.978	ENSCCAG00000029813	-	69	53.695	Cebus_capucinus
ENSFHEG00000017895	upf3b	63	63.366	ENSCATG00000017506	UPF3B	97	66.029	Cercocebus_atys
ENSFHEG00000017895	upf3b	63	64.026	ENSCLAG00000003260	UPF3B	93	54.709	Chinchilla_lanigera
ENSFHEG00000017895	upf3b	63	60.759	ENSCSAG00000018348	UPF3B	93	52.288	Chlorocebus_sabaeus
ENSFHEG00000017895	upf3b	93	56.916	ENSCPBG00000020685	UPF3B	93	56.463	Chrysemys_picta_bellii
ENSFHEG00000017895	upf3b	56	64.835	ENSCANG00000029220	UPF3B	65	66.029	Colobus_angolensis_palliatus
ENSFHEG00000017895	upf3b	93	52.573	ENSCGRG00001006858	-	94	51.794	Cricetulus_griseus_chok1gshd
ENSFHEG00000017895	upf3b	74	52.809	ENSCGRG00001013643	-	92	54.386	Cricetulus_griseus_chok1gshd
ENSFHEG00000017895	upf3b	85	55.584	ENSCGRG00000007627	Upf3b	93	54.707	Cricetulus_griseus_crigri
ENSFHEG00000017895	upf3b	89	52.163	ENSCSEG00000005106	upf3a	83	52.184	Cynoglossus_semilaevis
ENSFHEG00000017895	upf3b	99	73.542	ENSCSEG00000002046	upf3b	90	78.161	Cynoglossus_semilaevis
ENSFHEG00000017895	upf3b	100	86.739	ENSCVAG00000005030	upf3b	100	86.522	Cyprinodon_variegatus
ENSFHEG00000017895	upf3b	91	47.897	ENSCVAG00000022333	upf3a	50	55.602	Cyprinodon_variegatus
ENSFHEG00000017895	upf3b	93	70.023	ENSDARG00000000489	upf3b	93	68.493	Danio_rerio
ENSFHEG00000017895	upf3b	88	51.574	ENSDARG00000069297	upf3a	84	50.725	Danio_rerio
ENSFHEG00000017895	upf3b	93	51.957	ENSDNOG00000008665	UPF3B	93	52.268	Dasypus_novemcinctus
ENSFHEG00000017895	upf3b	93	53.244	ENSDORG00000006077	Upf3b	93	52.915	Dipodomys_ordii
ENSFHEG00000017895	upf3b	96	50.649	ENSEASG00005012919	UPF3B	93	52.889	Equus_asinus_asinus
ENSFHEG00000017895	upf3b	96	50.649	ENSECAG00000016947	UPF3B	93	52.889	Equus_caballus
ENSFHEG00000017895	upf3b	99	64.754	ENSELUG00000020389	upf3b	100	67.076	Esox_lucius
ENSFHEG00000017895	upf3b	89	50.472	ENSELUG00000011050	upf3a	83	48.706	Esox_lucius
ENSFHEG00000017895	upf3b	96	55.172	ENSFCAG00000004388	UPF3B	93	54.667	Felis_catus
ENSFHEG00000017895	upf3b	96	49.007	ENSFCAG00000014602	UPF3A	84	49.188	Felis_catus
ENSFHEG00000017895	upf3b	93	48.421	ENSFALG00000001569	UPF3B	94	53.361	Ficedula_albicollis
ENSFHEG00000017895	upf3b	96	53.478	ENSFDAG00000018869	UPF3B	93	54.222	Fukomys_damarensis
ENSFHEG00000017895	upf3b	100	65.180	ENSGMOG00000001621	upf3b	93	67.277	Gadus_morhua
ENSFHEG00000017895	upf3b	93	56.858	ENSGALG00000008618	UPF3B	94	57.301	Gallus_gallus
ENSFHEG00000017895	upf3b	100	85.000	ENSGAFG00000000829	upf3b	100	87.174	Gambusia_affinis
ENSFHEG00000017895	upf3b	100	73.176	ENSGACG00000017435	upf3b	94	85.214	Gasterosteus_aculeatus
ENSFHEG00000017895	upf3b	93	61.312	ENSGAGG00000001219	UPF3B	94	60.091	Gopherus_agassizii
ENSFHEG00000017895	upf3b	63	63.036	ENSGGOG00000023995	UPF3B	93	53.812	Gorilla_gorilla
ENSFHEG00000017895	upf3b	100	80.519	ENSHBUG00000017393	upf3b	100	80.519	Haplochromis_burtoni
ENSFHEG00000017895	upf3b	96	52.174	ENSHGLG00000019582	-	93	53.333	Heterocephalus_glaber_female
ENSFHEG00000017895	upf3b	69	55.821	ENSHGLG00000011189	-	67	59.649	Heterocephalus_glaber_female
ENSFHEG00000017895	upf3b	96	51.957	ENSHGLG00100002042	-	93	52.222	Heterocephalus_glaber_male
ENSFHEG00000017895	upf3b	69	55.821	ENSHGLG00100001889	-	68	59.649	Heterocephalus_glaber_male
ENSFHEG00000017895	upf3b	100	70.940	ENSHCOG00000017004	upf3b	100	70.940	Hippocampus_comes
ENSFHEG00000017895	upf3b	100	69.872	ENSIPUG00000019249	upf3b	98	68.822	Ictalurus_punctatus
ENSFHEG00000017895	upf3b	93	53.691	ENSSTOG00000001101	UPF3B	93	53.778	Ictidomys_tridecemlineatus
ENSFHEG00000017895	upf3b	96	52.802	ENSJJAG00000000053	Upf3b	93	52.889	Jaculus_jaculus
ENSFHEG00000017895	upf3b	100	83.007	ENSKMAG00000020300	upf3b	100	83.007	Kryptolebias_marmoratus
ENSFHEG00000017895	upf3b	60	84.783	ENSLBEG00000028689	upf3b	59	84.444	Labrus_bergylta
ENSFHEG00000017895	upf3b	100	58.686	ENSLACG00000008691	UPF3B	93	58.916	Latimeria_chalumnae
ENSFHEG00000017895	upf3b	91	52.304	ENSLOCG00000002665	upf3a	84	54.034	Lepisosteus_oculatus
ENSFHEG00000017895	upf3b	98	58.537	ENSLOCG00000015238	upf3b	95	67.281	Lepisosteus_oculatus
ENSFHEG00000017895	upf3b	93	53.675	ENSLAFG00000001267	UPF3B	93	53.778	Loxodonta_africana
ENSFHEG00000017895	upf3b	59	64.583	ENSMFAG00000045414	UPF3B	97	66.029	Macaca_fascicularis
ENSFHEG00000017895	upf3b	59	64.583	ENSMMUG00000020222	UPF3B	97	66.029	Macaca_mulatta
ENSFHEG00000017895	upf3b	59	64.583	ENSMNEG00000039794	UPF3B	97	66.029	Macaca_nemestrina
ENSFHEG00000017895	upf3b	63	63.366	ENSMLEG00000010999	UPF3B	97	66.029	Mandrillus_leucophaeus
ENSFHEG00000017895	upf3b	100	80.303	ENSMZEG00005007871	upf3b	100	80.303	Maylandia_zebra
ENSFHEG00000017895	upf3b	86	49.389	ENSMGAG00000014837	UPF3A	89	49.347	Meleagris_gallopavo
ENSFHEG00000017895	upf3b	78	57.895	ENSMGAG00000007728	UPF3B	91	57.895	Meleagris_gallopavo
ENSFHEG00000017895	upf3b	93	51.007	ENSMAUG00000008705	Upf3b	93	50.224	Mesocricetus_auratus
ENSFHEG00000017895	upf3b	93	52.371	ENSMOCG00000017893	Upf3b	93	51.404	Microtus_ochrogaster
ENSFHEG00000017895	upf3b	100	75.108	ENSMMOG00000004183	upf3b	100	75.325	Mola_mola
ENSFHEG00000017895	upf3b	86	61.443	ENSMODG00000010232	UPF3B	93	60.599	Monodelphis_domestica
ENSFHEG00000017895	upf3b	100	76.395	ENSMALG00000008042	upf3b	100	76.824	Monopterus_albus
ENSFHEG00000017895	upf3b	93	53.215	MGP_CAROLIEiJ_G0032999	Upf3b	93	52.667	Mus_caroli
ENSFHEG00000017895	upf3b	93	53.437	ENSMUSG00000036572	Upf3b	93	52.889	Mus_musculus
ENSFHEG00000017895	upf3b	93	53.880	MGP_PahariEiJ_G0031543	Upf3b	93	53.333	Mus_pahari
ENSFHEG00000017895	upf3b	93	53.437	MGP_SPRETEiJ_G0034152	Upf3b	93	52.889	Mus_spretus
ENSFHEG00000017895	upf3b	96	52.826	ENSMPUG00000001531	UPF3B	95	53.778	Mustela_putorius_furo
ENSFHEG00000017895	upf3b	90	44.340	ENSMLUG00000015905	UPF3A	92	45.036	Myotis_lucifugus
ENSFHEG00000017895	upf3b	96	53.247	ENSMLUG00000010821	UPF3B	93	54.222	Myotis_lucifugus
ENSFHEG00000017895	upf3b	93	53.437	ENSNGAG00000008231	Upf3b	93	52.691	Nannospalax_galili
ENSFHEG00000017895	upf3b	58	67.925	ENSNLEG00000014897	UPF3B	93	53.363	Nomascus_leucogenys
ENSFHEG00000017895	upf3b	93	53.915	ENSODEG00000002186	-	93	52.018	Octodon_degus
ENSFHEG00000017895	upf3b	100	81.075	ENSONIG00000002536	upf3b	100	81.505	Oreochromis_niloticus
ENSFHEG00000017895	upf3b	86	56.608	ENSOANG00000002594	-	93	55.750	Ornithorhynchus_anatinus
ENSFHEG00000017895	upf3b	93	52.391	ENSOCUG00000010213	UPF3B	93	52.700	Oryctolagus_cuniculus
ENSFHEG00000017895	upf3b	100	77.391	ENSORLG00000001026	upf3b	100	77.391	Oryzias_latipes
ENSFHEG00000017895	upf3b	93	51.556	ENSORLG00000010911	upf3a	82	50.591	Oryzias_latipes
ENSFHEG00000017895	upf3b	89	49.070	ENSORLG00020014317	upf3a	82	50.852	Oryzias_latipes_hni
ENSFHEG00000017895	upf3b	100	77.391	ENSORLG00020003758	upf3b	100	77.391	Oryzias_latipes_hni
ENSFHEG00000017895	upf3b	100	76.957	ENSORLG00015012954	upf3b	100	76.957	Oryzias_latipes_hsok
ENSFHEG00000017895	upf3b	89	51.429	ENSOMEG00000014425	upf3a	82	53.285	Oryzias_melastigma
ENSFHEG00000017895	upf3b	100	77.174	ENSOMEG00000014736	upf3b	100	77.174	Oryzias_melastigma
ENSFHEG00000017895	upf3b	63	63.036	ENSOGAG00000004643	-	93	53.778	Otolemur_garnettii
ENSFHEG00000017895	upf3b	96	51.923	ENSOGAG00000033003	-	96	52.772	Otolemur_garnettii
ENSFHEG00000017895	upf3b	96	51.050	ENSOARG00000016051	-	93	51.948	Ovis_aries
ENSFHEG00000017895	upf3b	63	63.036	ENSPPAG00000040390	UPF3B	93	53.812	Pan_paniscus
ENSFHEG00000017895	upf3b	96	53.463	ENSPPRG00000023536	UPF3B	93	53.778	Panthera_pardus
ENSFHEG00000017895	upf3b	96	53.503	ENSPTIG00000015264	UPF3B	93	53.247	Panthera_tigris_altaica
ENSFHEG00000017895	upf3b	63	63.036	ENSPTRG00000022228	UPF3B	93	53.812	Pan_troglodytes
ENSFHEG00000017895	upf3b	63	63.366	ENSPANG00000000900	UPF3B	97	66.029	Papio_anubis
ENSFHEG00000017895	upf3b	99	65.161	ENSPKIG00000019226	upf3b	93	82.639	Paramormyrops_kingsleyae
ENSFHEG00000017895	upf3b	57	63.258	ENSPSIG00000005833	UPF3B	88	63.347	Pelodiscus_sinensis
ENSFHEG00000017895	upf3b	57	84.411	ENSPMGG00000016067	upf3b	95	84.411	Periophthalmus_magnuspinnatus
ENSFHEG00000017895	upf3b	93	52.876	ENSPEMG00000012352	Upf3b	93	52.328	Peromyscus_maniculatus_bairdii
ENSFHEG00000017895	upf3b	88	58.738	ENSPCIG00000028914	UPF3B	85	57.908	Phascolarctos_cinereus
ENSFHEG00000017895	upf3b	74	57.075	ENSPCIG00000019590	-	65	68.243	Phascolarctos_cinereus
ENSFHEG00000017895	upf3b	100	85.870	ENSPLAG00000019922	upf3b	100	88.043	Poecilia_latipinna
ENSFHEG00000017895	upf3b	100	85.870	ENSPLAG00000005105	upf3b	100	88.043	Poecilia_latipinna
ENSFHEG00000017895	upf3b	89	48.113	ENSPLAG00000011960	upf3a	54	77.419	Poecilia_latipinna
ENSFHEG00000017895	upf3b	59	71.053	ENSPMEG00000000836	upf3a	83	49.770	Poecilia_mexicana
ENSFHEG00000017895	upf3b	100	85.652	ENSPMEG00000023532	upf3b	100	87.826	Poecilia_mexicana
ENSFHEG00000017895	upf3b	61	60.473	ENSPPYG00000020675	-	63	66.029	Pongo_abelii
ENSFHEG00000017895	upf3b	93	51.304	ENSPCAG00000009464	UPF3B	93	50.976	Procavia_capensis
ENSFHEG00000017895	upf3b	93	54.362	ENSPCOG00000021960	UPF3B	93	53.778	Propithecus_coquereli
ENSFHEG00000017895	upf3b	100	80.870	ENSPNYG00000009846	upf3b	100	80.870	Pundamilia_nyererei
ENSFHEG00000017895	upf3b	92	43.750	ENSPNAG00000019532	upf3a	83	50.483	Pygocentrus_nattereri
ENSFHEG00000017895	upf3b	97	70.678	ENSPNAG00000021528	upf3b	95	70.455	Pygocentrus_nattereri
ENSFHEG00000017895	upf3b	93	53.437	ENSRNOG00000039994	Upf3b	93	52.889	Rattus_norvegicus
ENSFHEG00000017895	upf3b	63	63.036	ENSRROG00000041031	UPF3B	97	66.029	Rhinopithecus_roxellana
ENSFHEG00000017895	upf3b	96	53.118	ENSSBOG00000019740	UPF3B	99	65.550	Saimiri_boliviensis_boliviensis
ENSFHEG00000017895	upf3b	93	56.484	ENSSHAG00000008634	UPF3B	94	56.388	Sarcophilus_harrisii
ENSFHEG00000017895	upf3b	100	65.733	ENSSFOG00015005614	upf3b	94	69.425	Scleropages_formosus
ENSFHEG00000017895	upf3b	100	76.660	ENSSMAG00000012913	upf3b	100	76.017	Scophthalmus_maximus
ENSFHEG00000017895	upf3b	100	80.172	ENSSDUG00000005682	upf3b	100	79.526	Seriola_dumerili
ENSFHEG00000017895	upf3b	89	42.958	ENSSDUG00000009680	upf3a	57	78.495	Seriola_dumerili
ENSFHEG00000017895	upf3b	100	80.388	ENSSLDG00000003130	upf3b	100	79.741	Seriola_lalandi_dorsalis
ENSFHEG00000017895	upf3b	90	50.572	ENSSARG00000004147	UPF3B	93	54.146	Sorex_araneus
ENSFHEG00000017895	upf3b	98	54.678	ENSSPUG00000013082	UPF3B	93	54.825	Sphenodon_punctatus
ENSFHEG00000017895	upf3b	99	80.744	ENSSPAG00000009989	upf3b	99	81.838	Stegastes_partitus
ENSFHEG00000017895	upf3b	89	49.878	ENSSPAG00000007938	upf3a	72	70.701	Stegastes_partitus
ENSFHEG00000017895	upf3b	96	52.814	ENSSSCG00000012617	UPF3B	93	53.363	Sus_scrofa
ENSFHEG00000017895	upf3b	86	60.750	ENSTGUG00000003413	UPF3B	93	59.250	Taeniopygia_guttata
ENSFHEG00000017895	upf3b	90	48.276	ENSTRUG00000012730	upf3a	84	47.765	Takifugu_rubripes
ENSFHEG00000017895	upf3b	100	73.810	ENSTRUG00000010645	upf3b	100	73.810	Takifugu_rubripes
ENSFHEG00000017895	upf3b	100	65.806	ENSTNIG00000015763	upf3b	100	62.876	Tetraodon_nigroviridis
ENSFHEG00000017895	upf3b	93	43.791	ENSTBEG00000003229	UPF3B	70	55.474	Tupaia_belangeri
ENSFHEG00000017895	upf3b	93	54.989	ENSUAMG00000024565	UPF3B	93	53.556	Ursus_americanus
ENSFHEG00000017895	upf3b	86	53.865	ENSUMAG00000002150	UPF3B	84	53.117	Ursus_maritimus
ENSFHEG00000017895	upf3b	81	53.351	ENSVPAG00000009971	UPF3B	92	52.987	Vicugna_pacos
ENSFHEG00000017895	upf3b	93	51.230	ENSVVUG00000011594	UPF3B	97	66.029	Vulpes_vulpes
ENSFHEG00000017895	upf3b	87	44.019	ENSXETG00000002572	upf3a	90	42.446	Xenopus_tropicalis
ENSFHEG00000017895	upf3b	93	55.329	ENSXETG00000007440	upf3b	84	74.742	Xenopus_tropicalis
ENSFHEG00000017895	upf3b	100	76.739	ENSXCOG00000016586	upf3b	97	92.821	Xiphophorus_couchianus
ENSFHEG00000017895	upf3b	100	84.565	ENSXMAG00000013680	upf3b	100	86.739	Xiphophorus_maculatus